Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012796

Physical Location & Seq

Genomic Coordinates Reverse (-)

21558894 .. 21560312

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTTTGGTTTAAAGAAGTCTCCTTTGAAGGCTGCTAAACATATCACACTGAATCCTGTACATCCGGCGTCCTCTGACTCAAACCCTTTTGAAGATGCACCAGTTGGACAGCGAGGACAGGAGAAGTCTTCTTCCTATGCATACAAGACTATTTTGACTGAGAGGAACAAATACAAGAATGATTTCCGTGACACAGGAGGAGTACAGAATCAATCAGTGGAGGAGTTGGAGAACTATGCAGTGTACAAGGCTGAGGAGACTACAAAAGCAGTCCACGGCTGCTTGAAGATCGCTGAAGAAATGAGGGAGGATGCTACCAAGACTTTGGTCATGTTGCATCAGCAAGGCGAACAAATCACTAGGACCCACATGGTTGCTGCAGACATCGATCAGGATCTTACTCGGGGTGAAAAGCTTCTGGGAAGTCTTGGGGGCATCTTCTCTAAGACTTGGAAGCCAAAGAGGACTCGCCCAATACGTGGCCCTCTCATTACAGGAGACCATGCAGTCAGAATGGGCAGCCAGGAGGAGAGGGAGAAGTTGGGACTGAGACCAGAACCCAAGGGAAGATCTAATCCACGAACATTACCTGATGGACCAACCAGCACCCTACAGAAAGTCGAGGTTGAGAAGTCAAAGCAAGATGATGGATTGTCCGATTTAAGTTCGATCTGTTGGGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.4

Weight (kDa)

8.41

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61210 AT5G61210
fragaria_vesca	FvH4_5g14310
malus_domestica	MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica	Prupe.5G201000_v2.0.a1
pyrus_communis	pycom06g17650 pycom14g17240
rosa_chinensis	RchiOBHm_Chr7g0182581
rosa_laevigata	RLG00000005119
rosa_multiflora	Rmu_sc0005811.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271140
rosa_rugosa	Rorug06G0448400
rosa_samantha	Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana	Rw7G004220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	479
AclWI	GGATC	1 cut(s)	402
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	3 cut(s)	60, 204, 245
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	28, 92, 286
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	2 cut(s)	415, 684
AluI	AGCT	2 cut(s)	415, 684
Alw26I	GTCTC	4 cut(s)	24, 251, 492, 544
AlwI	GGATC	1 cut(s)	402
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	4 cut(s)	32, 279, 377, 519
Asp700I	GAANNNNTTC	2 cut(s)	182, 414
AspS9I	GGNCC	3 cut(s)	363, 482, 596
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	2 cut(s)	363, 596
BbsI	GAAGAC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	19, 266, 364, 531
BccI	CCATC	2 cut(s)	587, 641
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	4 cut(s)	24, 251, 492, 544
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	2 cut(s)	378, 611
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	4 cut(s)	33, 280, 378, 520
BlsI	GCNGC	4 cut(s)	34, 281, 379, 521
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	2 cut(s)	363, 596
BmeT110I	CYCGRG	1 cut(s)	402
BmgT120I	GGNCC	3 cut(s)	363, 482, 596
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	4 cut(s)	85, 301, 346, 444
BoxI	GACNNNNGTC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	387
BsaAI	YACGTR	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	2 cut(s)	492, 544
BsaJI	CCNNGG	2 cut(s)	274, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	274, 561
BseGI	GGATG	2 cut(s)	61, 316
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMII	CTCAG	3 cut(s)	150, 243, 539
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	4 cut(s)	213, 236, 269, 542
BseXI	GCAGC	4 cut(s)	19, 266, 364, 531
BshFI	GGCC	1 cut(s)	483
BshVI	ATCGAT	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	4 cut(s)	24, 251, 492, 544
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	1 cut(s)	483
Bso31I	GGTCTC	2 cut(s)	492, 544
BsoBI	CYCGRG	1 cut(s)	402
Bsp1407I	TGTACA	2 cut(s)	58, 243
Bsp143I	GATC	5 cut(s)	288, 388, 394, 569, 669
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	3 cut(s)	151, 244, 540
BspDI	ATCGAT	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	365
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	402
BspTNI	GGTCTC	2 cut(s)	492, 544
BsrGI	TGTACA	2 cut(s)	58, 243
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	274, 561
BssMI	GATC	5 cut(s)	288, 388, 394, 569, 669
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	524
BstACI	GRCGYC	1 cut(s)	68
BstAUI	TGTACA	2 cut(s)	58, 243
BstBAI	YACGTR	1 cut(s)	479
BstDEI	CTNAG	4 cut(s)	159, 252, 444, 548
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	2 cut(s)	61, 316
BstKTI	GATC	5 cut(s)	291, 391, 397, 572, 672
BstMAI	GTCTC	4 cut(s)	24, 251, 492, 544
BstMBI	GATC	5 cut(s)	288, 388, 394, 569, 669
BstNI	CCWGG	1 cut(s)	524
BstPAI	GACNNNNGTC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	2 cut(s)	378, 611
BstV1I	GCAGC	4 cut(s)	19, 266, 364, 531
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	394, 569
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	2 cut(s)	394, 569
Bsu15I	ATCGAT	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	483
BsuTUI	ATCGAT	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	61, 316
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	47, 222, 246
Cfr13I	GGNCC	3 cut(s)	363, 482, 596
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	59, 203, 244
CviAII	CATG	3 cut(s)	331, 370, 503
CviJI	RGCY	8 cut(s)	32, 251, 279, 415, 457, 483, 522, 684
CviKI_1	RGCY	8 cut(s)	32, 251, 279, 415, 457, 483, 522, 684
CviQI	GTAC	3 cut(s)	59, 203, 244
DdeI	CTNAG	4 cut(s)	159, 252, 444, 548
DpnI	GATC	5 cut(s)	290, 390, 396, 571, 671
DpnII	GATC	5 cut(s)	288, 388, 394, 569, 669
DraI	TTTAAA	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	561
Eco31I	GGTCTC	2 cut(s)	492, 544
Eco47I	GGWCC	2 cut(s)	363, 596
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	334, 373, 506
FaiI	YATR	7 cut(s)	42, 138, 142, 237, 332, 371, 504
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	3 cut(s)	330, 369, 502
Fnu4HI	GCNGC	4 cut(s)	33, 280, 378, 520
FokI	GGATG	2 cut(s)	48, 323
Fsp4HI	GCNGC	4 cut(s)	33, 280, 378, 520
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	4 cut(s)	33, 280, 378, 520
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	334, 373, 506
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	4 cut(s)	52, 77, 208, 466
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	244, 274
Hpy188I	TCNGA	3 cut(s)	76, 512, 658
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	2 cut(s)	244, 274
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	6 cut(s)	98, 140, 239, 337, 380, 506
HpyF3I	CTNAG	4 cut(s)	159, 252, 444, 548
HpySE526I	ACGT	1 cut(s)	478
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	334, 373, 506
Kzo9I	GATC	5 cut(s)	288, 388, 394, 569, 669
Lsp1109I	GCAGC	4 cut(s)	19, 266, 364, 531
LweI	GCATC	4 cut(s)	85, 301, 346, 444
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	5 cut(s)	290, 390, 396, 571, 671
MboI	GATC	5 cut(s)	288, 388, 394, 569, 669
MboII	GAAGA	7 cut(s)	104, 120, 123, 298, 308, 430, 579
MflI	RGATCY	2 cut(s)	394, 569
MlyI	GAGTC	2 cut(s)	71, 460
MmeI	TCCRAC	2 cut(s)	85, 207
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	2 cut(s)	182, 414
MseI	TTAA	2 cut(s)	11, 662
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
NdeII	GATC	5 cut(s)	288, 388, 394, 569, 669
NlaIII	CATG	3 cut(s)	334, 373, 506
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PdmI	GAANNNNTTC	2 cut(s)	182, 414
PfeI	GAWTC	2 cut(s)	52, 208
PflMI	CCANNNNNTGG	1 cut(s)	479
PkrI	GCNGC	4 cut(s)	34, 281, 379, 521
PleI	GAGTC	2 cut(s)	71, 460
PpsI	GAGTC	2 cut(s)	71, 460
Ppu21I	YACGTR	1 cut(s)	479
PpuMI	RGGWCCY	1 cut(s)	363
PshAI	GACNNNNGTC	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	3 cut(s)	363, 482, 596
PspPPI	RGGWCCY	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	394, 569
RsaI	GTAC	3 cut(s)	60, 204, 245
RsaNI	GTAC	3 cut(s)	59, 203, 244
SaqAI	TTAA	2 cut(s)	11, 662
SatI	GCNGC	4 cut(s)	33, 280, 378, 520
Sau3AI	GATC	5 cut(s)	288, 388, 394, 569, 669
Sau96I	GGNCC	3 cut(s)	363, 482, 596
SchI	GAGTC	2 cut(s)	71, 460
ScrFI	CCNGG	1 cut(s)	524
SetI	ASST	5 cut(s)	417, 481, 592, 627, 686
SfaNI	GCATC	4 cut(s)	85, 301, 346, 444
SfcI	CTRYAG	2 cut(s)	378, 611
SinI	GGWCC	2 cut(s)	363, 596
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	561
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	3 cut(s)	387, 621, 668
TatI	WGTACW	3 cut(s)	58, 202, 243
TfiI	GAWTC	2 cut(s)	52, 208
Tru1I	TTAA	2 cut(s)	11, 662
Tru9I	TTAA	2 cut(s)	11, 662
TscAI	CASTG	3 cut(s)	54, 222, 246
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	32, 279, 377, 519
Tsp45I	GTSAC	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	3 cut(s)	54, 222, 246
Van91I	CCANNNNNTGG	1 cut(s)	479
VpaK11BI	GGWCC	2 cut(s)	363, 596
XmnI	GAANNNNTTC	2 cut(s)	182, 414
XspI	CTAG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.