Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012796

Physical Location & Seq

Genomic Coordinates Forward (+)

8093248 .. 8096537

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTTTGGTTTAAAGAAGTCCCCGATAAGGGCTGCTAAGCACAACTCAGTTGACCCTCTGTATCCTGCGTCCTCCAGCTCAAACCCATTTGATGACGAGCCTGCTCAAGTAAGACAGAATGAGAAGCATGCACTTGTGGGACAGAATGCGAAGCATGCAAATGATAAGCAGGCACTATTTGGTCAGAATACTAGCACCAAACCTTTTGATGATGATCAAGGAAAAGAGAATAATTCTTCTTCATACAAGGGTACTTATGCAGAGAGAAACAAGTACAAGAACGATTTCCGTGATTCAGGAGGCCTGGAAAATCAATCTGTGCAAGAGTTAGAAAGTTATGCAGTGTATAAGGCTGAGGAGACTACAAACTCAGTCAACCAGTGCCTGAAGATTGCTGAAGATATACGTGAGGATGCTTCCAAGACTCTGGTTATGTTGCATCACCAGGGAGACCAAATAAGAAGGACCCACATGGTTGCTGCTGACATTGAACAGGATCTCAGTCGGGGTGAAAAGCTTCTGGGGAGTCTTGGGGGCATCTTCTCTAAGACTTGGAAGCCAAAGAAGACTCGCACAATTAGTGGCCCTGTCATCATGGAAGAATCTGCAACCAAAAGGAGCAGCCACTTGGAGAGGGAGAAGCTGGGACTGACTCCTGCACTAAAGGGATCGTCACATTCACGAACACCACTTCCTGAACCCACCAATGCCCTTCAGAAAGTTGAGGTAGAAAAGACAAAGCAAGATGATGGCCTGTCAGATTTAAGTAATCTGTTGGGAGAGCTAAAGGATATGGCCGTTGACATGGGGTCTGAAATTGATAGGCATAACAAAGCTATAGGCCATATGGATGCTGATGTTGATGAGCTCCACTACCGTGTTAGAGGTGCTACTCAACGCGGCCGACGCTTGCTCGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.14

Weight (kDa)

7.2

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61210 AT5G61210
fragaria_vesca	FvH4_5g14310
malus_domestica	MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica	Prupe.5G201000_v2.0.a1
pyrus_communis	pycom06g17650 pycom14g17240
rosa_chinensis	RchiOBHm_Chr7g0182581
rosa_laevigata	RLG00000005119
rosa_multiflora	Rmu_sc0005811.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271140
rosa_rugosa	Rorug06G0448400
rosa_samantha	Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana	Rw7G004220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	900
AciI	CCGC	1 cut(s)	900
AclWI	GGATC	2 cut(s)	504, 676
AcoI	YGGCCR	2 cut(s)	795, 901
AcuI	CTGAAG	3 cut(s)	407, 417, 698
AfaI	GTAC	2 cut(s)	253, 275
AfiI	CCNNNNNNNGG	2 cut(s)	27, 28
AgsI	TTSAA	1 cut(s)	491
AhdI	GACNNNNNGTC	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	303, 444
AleI	CACNNNNGTG	1 cut(s)	876
AloI	GAACNNNNNNTCC	2 cut(s)	676, 708
AluBI	AGCT	6 cut(s)	78, 517, 643, 784, 836, 868
AluI	AGCT	6 cut(s)	78, 517, 643, 784, 836, 868
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	353, 444
AlwI	GGATC	2 cut(s)	504, 676
AlwNI	CAGNNNCTG	1 cut(s)	385
AoxI	GGCC	6 cut(s)	301, 583, 751, 795, 841, 901
ApeKI	GCWGC	3 cut(s)	32, 479, 621
Asp700I	GAANNNNTTC	2 cut(s)	284, 516
AspS9I	GGNCC	2 cut(s)	465, 584
AsuHPI	GGTGA	2 cut(s)	434, 521
AvaII	GGWCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	870
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	19, 466, 633
BccI	CCATC	1 cut(s)	743
BceAI	ACGGC	1 cut(s)	782
BciT130I	CCWGG	2 cut(s)	305, 446
BciVI	GTATCC	1 cut(s)	72
BclI	TGATCA	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	353, 444
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	4 cut(s)	33, 480, 622, 901
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	4 cut(s)	34, 481, 623, 902
Bme1390I	CCNGG	2 cut(s)	305, 446
Bme18I	GGWCC	1 cut(s)	465
BmeRI	GACNNNNNGTC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	465, 584
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	305, 446
BmsI	GCATC	4 cut(s)	403, 448, 546, 841
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 28
Bse1I	ACTGG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	2 cut(s)	305, 446
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	2 cut(s)	418, 856
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	27, 28
BseMII	CTCAG	4 cut(s)	60, 345, 384, 514
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	371
BseX3I	CGGCCG	1 cut(s)	901
BseXI	GCAGC	3 cut(s)	19, 466, 633
BseYI	CCCAGC	1 cut(s)	643
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	900
Bsh1285I	CGRYCG	1 cut(s)	904
BshFI	GGCC	6 cut(s)	303, 585, 753, 797, 843, 903
BsiEI	CGRYCG	1 cut(s)	904
BsiHKAI	GWGCWC	1 cut(s)	870
BslFI	GGGAC	3 cut(s)	4, 153, 660
BslI	CCNNNNNNNGG	2 cut(s)	27, 28
BsmAI	GTCTC	2 cut(s)	353, 444
BsmFI	GGGAC	3 cut(s)	4, 153, 660
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	6 cut(s)	303, 585, 753, 797, 843, 903
Bso31I	GGTCTC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp143I	GATC	3 cut(s)	214, 496, 668
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	900
BspANI	GGCC	6 cut(s)	303, 585, 753, 797, 843, 903
BspCNI	CTCAG	4 cut(s)	59, 346, 383, 513
BspFNI	CGCG	1 cut(s)	900
BspLI	GGNNCC	1 cut(s)	467
BspPI	GGATC	2 cut(s)	504, 676
BspTNI	GGTCTC	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	3 cut(s)	214, 496, 668
Bst2UI	CCWGG	2 cut(s)	305, 446
Bst4CI	ACNGT	1 cut(s)	878
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	5 cut(s)	102, 129, 156, 171, 911
BstDEI	CTNAG	6 cut(s)	36, 46, 354, 370, 500, 546
BstF5I	GGATG	2 cut(s)	418, 856
BstFNI	CGCG	1 cut(s)	900
BstKTI	GATC	3 cut(s)	217, 499, 671
BstMAI	GTCTC	2 cut(s)	353, 444
BstMBI	GATC	3 cut(s)	214, 496, 668
BstMCI	CGRYCG	1 cut(s)	904
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 906
BstNI	CCWGG	2 cut(s)	305, 446
BstNSI	RCATGY	2 cut(s)	131, 158
BstSCI	CCNGG	2 cut(s)	303, 444
BstSFI	CTRYAG	1 cut(s)	837
BstUI	CGCG	1 cut(s)	900
BstV1I	GCAGC	3 cut(s)	19, 466, 633
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	496
BstZI	CGGCCG	1 cut(s)	901
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	6 cut(s)	303, 585, 753, 797, 843, 903
BtsCI	GGATG	2 cut(s)	418, 856
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 386
Cac8I	GCNNGC	5 cut(s)	102, 129, 156, 171, 911
CaiI	CAGNNNCTG	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	465, 584
CseI	GACGC	2 cut(s)	57, 915
Csp6I	GTAC	2 cut(s)	252, 274
CviAII	CATG	5 cut(s)	128, 155, 472, 595, 805
CviQI	GTAC	2 cut(s)	252, 274
DdeI	CTNAG	6 cut(s)	36, 46, 354, 370, 500, 546
DpnI	GATC	3 cut(s)	216, 498, 670
DpnII	GATC	3 cut(s)	214, 496, 668
DraI	TTTAAA	1 cut(s)	12
DriI	GACNNNNNGTC	1 cut(s)	808
EaeI	YGGCCR	2 cut(s)	795, 901
EagI	CGGCCG	1 cut(s)	901
Eam1105I	GACNNNNNGTC	1 cut(s)	808
Ecl136II	GAGCTC	1 cut(s)	868
EclXI	CGGCCG	1 cut(s)	901
Eco147I	AGGCCT	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	870
Eco31I	GGTCTC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	465
Eco52I	CGGCCG	1 cut(s)	901
Eco53kI	GAGCTC	1 cut(s)	868
Eco57I	CTGAAG	3 cut(s)	407, 417, 698
EcoICRI	GAGCTC	1 cut(s)	868
EcoO109I	RGGNCCY	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	303, 444
EcoT38I	GRGCYC	1 cut(s)	870
FaeI	CATG	5 cut(s)	131, 158, 475, 598, 808
FaqI	GGGAC	3 cut(s)	4, 153, 660
FatI	CATG	5 cut(s)	127, 154, 471, 594, 804
FauNDI	CATATG	1 cut(s)	846
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	33, 480, 622, 901
FokI	GGATG	2 cut(s)	425, 863
FriOI	GRGCYC	1 cut(s)	870
Fsp4HI	GCNGC	4 cut(s)	33, 480, 622, 901
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	4 cut(s)	33, 480, 622, 901
GsaI	CCCAGC	1 cut(s)	647
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	6 cut(s)	303, 585, 753, 797, 843, 903
HgaI	GACGC	2 cut(s)	57, 915
Hin1II	CATG	5 cut(s)	131, 158, 475, 598, 808
HincII	GTYRAC	3 cut(s)	52, 376, 802
HindII	GTYRAC	3 cut(s)	52, 376, 802
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	6 cut(s)	293, 424, 526, 568, 602, 652
HphI	GGTGA	2 cut(s)	434, 521
Hpy166II	GTNNAC	3 cut(s)	52, 376, 802
Hpy188I	TCNGA	5 cut(s)	186, 717, 760, 814, 917
Hpy188III	TCNNGA	3 cut(s)	297, 681, 695
Hpy8I	GTNNAC	3 cut(s)	52, 376, 802
Hpy99I	CGWCG	1 cut(s)	909
HpyAV	CCTTC	2 cut(s)	456, 722
HpyCH4III	ACNGT	1 cut(s)	878
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	8 cut(s)	131, 158, 260, 322, 341, 439, 608, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 906
HpyF3I	CTNAG	6 cut(s)	36, 46, 354, 370, 500, 546
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	5 cut(s)	131, 158, 475, 598, 808
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	214, 496, 668
LmnI	GCTCC	2 cut(s)	618, 873
Lsp1109I	GCAGC	3 cut(s)	19, 466, 633
LweI	GCATC	4 cut(s)	403, 448, 546, 841
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	3 cut(s)	216, 498, 670
MboI	GATC	3 cut(s)	214, 496, 668
MboII	GAAGA	7 cut(s)	228, 231, 400, 410, 532, 577, 611
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	3 cut(s)	232, 576, 816
MlyI	GAGTC	4 cut(s)	418, 535, 562, 646
MnlI	CCTC	8 cut(s)	66, 82, 293, 349, 403, 627, 718, 878
MroXI	GAANNNNTTC	2 cut(s)	284, 516
MseI	TTAA	2 cut(s)	11, 764
MslI	CAYNNNNRTG	3 cut(s)	159, 849, 876
MspR9I	CCNGG	2 cut(s)	305, 446
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	2 cut(s)	305, 446
MvnI	CGCG	1 cut(s)	900
MwoI	GCNNNNNNNGC	2 cut(s)	155, 906
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	3 cut(s)	214, 496, 668
NlaIII	CATG	5 cut(s)	131, 158, 475, 598, 808
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	2 cut(s)	131, 158
OliI	CACNNNNGTG	1 cut(s)	876
PaeI	GCATGC	2 cut(s)	131, 158
PceI	AGGCCT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	2 cut(s)	284, 516
PfeI	GAWTC	2 cut(s)	293, 602
PkrI	GCNGC	4 cut(s)	34, 481, 623, 902
PleI	GAGTC	4 cut(s)	418, 534, 562, 646
PpsI	GAGTC	4 cut(s)	418, 534, 562, 646
Ppu21I	YACGTR	1 cut(s)	407
PpuMI	RGGWCCY	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	303, 444
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	2 cut(s)	303, 444
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	2 cut(s)	465, 584
PspPPI	RGGWCCY	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	2 cut(s)	253, 275
RsaNI	GTAC	2 cut(s)	252, 274
RseI	CAYNNNNRTG	3 cut(s)	159, 849, 876
SacI	GAGCTC	1 cut(s)	870
SaqAI	TTAA	2 cut(s)	11, 764
SatI	GCNGC	4 cut(s)	33, 480, 622, 901
Sau3AI	GATC	3 cut(s)	214, 496, 668
Sau96I	GGNCC	2 cut(s)	465, 584
SchI	GAGTC	4 cut(s)	418, 535, 562, 646
ScrFI	CCNGG	2 cut(s)	305, 446
SduI	GDGCHC	1 cut(s)	870
SfaNI	GCATC	4 cut(s)	403, 448, 546, 841
SfcI	CTRYAG	1 cut(s)	837
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	3 cut(s)	159, 849, 876
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
SphI	GCATGC	2 cut(s)	131, 158
Sse9I	AATT	3 cut(s)	232, 576, 816
SseBI	AGGCCT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	900
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	870
StuI	AGGCCT	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	303, 444
TaaI	ACNGT	1 cut(s)	878
TaiI	ACGT	1 cut(s)	409
TasI	AATT	3 cut(s)	232, 576, 816
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	903
TfiI	GAWTC	2 cut(s)	293, 602
Tru1I	TTAA	2 cut(s)	11, 764
Tru9I	TTAA	2 cut(s)	11, 764
TscAI	CASTG	2 cut(s)	348, 386
TseFI	GTSAC	1 cut(s)	672
TseI	GCWGC	3 cut(s)	32, 479, 621
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	348, 386
VpaK11BI	GGWCC	1 cut(s)	465
XceI	RCATGY	2 cut(s)	131, 158
XmnI	GAANNNNTTC	2 cut(s)	284, 516
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.