Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012796

Physical Location & Seq

Genomic Coordinates Reverse (-)

29514770 .. 29518292

Gene Structure 3523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1208700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTTCGGTTTAAAGAAGTCTCCTTTGAAGACTGCCAAAAATATCACACTCAATCCTGTACATCCTGCTTCCTCTGGCTCAAACCCTTTTGAAGATGCACCAATTGGACAGAATGCAAGCACTAATCCATTTGACGATGAGCAAGGACAAAAGAACTCTGCTTTGACAGAGAGGAACAAATACAAGAATGATTTCCGTGACACCGGAGGAGTACAGAATCAATCAGTGGAAGAGTTGGAGAATTATGCAGTGTACAAGGCTGAGGAGACTACAAAAGCAGTCAACGGCTGCTTGAAGATTGCTGAGGAAATCAGAGAGGATGCTACCAAGACTTTGGTCACGTTGCATCAGCAAGGCGAACAAATCACTAGGACCCACATGGTTGCTGCAGACATAGATCAGGATCTTAGTCGGGGTGAAAAGCTTCTGGGAAGTCTTGGGGGTATGTTCTCTAAGACGTGGAAGCCAAAGAGGACTCGCCCAATTAGTGGCCCTGTCATCACAGGAGATCACGCAGTAAGAAGGGGCAGCCAGGAGGAGAGGGAGAAGTTAGGACTGACTCCAGCACCCAAGGGAAGATCTAATCCCCGAACACTACCTGATGGACCAACCAGCGCCCTTCAGAAAGTCGAGGTTGAGAAGGCGAAGCAAGATGATGGATTGTCCGATTTAAGTGATCTGTTGGGAGAGCTGAAGGATATGGCCGTCGATATGGGGTCTGAAATTGAAAGGCATAACAAAGCTCTAGACGGTGTCTACGATGATGTTGATGTGATAAATGGCCGTGTTAGAGATGCAAATCAACGTGGTCGTCGCTTGCTCGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

30.29

Weight (kDa)

6.26

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61210 AT5G61210
fragaria_vesca	FvH4_5g14310
malus_domestica	MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica	Prupe.5G201000_v2.0.a1
pyrus_communis	pycom06g17650 pycom14g17240
rosa_chinensis	RchiOBHm_Chr7g0182581
rosa_laevigata	RLG00000005119
rosa_multiflora	Rmu_sc0005811.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271140
rosa_rugosa	Rorug06G0448400
rosa_samantha	Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana	Rw7G004220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	756
AclWI	GGATC	1 cut(s)	411
AcoI	YGGCCR	2 cut(s)	702, 781
AcuI	CTGAAG	2 cut(s)	605, 713
AfaI	GTAC	3 cut(s)	60, 213, 254
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	28, 92, 295, 728
AjiI	CACGTC	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	531
AluBI	AGCT	3 cut(s)	424, 691, 743
AluI	AGCT	3 cut(s)	424, 691, 743
Alw26I	GTCTC	2 cut(s)	24, 260
AlwI	GGATC	1 cut(s)	411
AoxI	GGCC	3 cut(s)	490, 702, 781
ApeKI	GCWGC	3 cut(s)	288, 386, 528
Asp700I	GAANNNNTTC	2 cut(s)	191, 423
AspLEI	GCGC	1 cut(s)	617
AspS9I	GGNCC	3 cut(s)	372, 491, 605
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	2 cut(s)	372, 605
BbsI	GAAGAC	1 cut(s)	35
BbvCI	CCTCAGC	2 cut(s)	261, 303
BbvI	GCAGC	3 cut(s)	275, 373, 540
BccI	CCATC	2 cut(s)	596, 650
BceAI	ACGGC	3 cut(s)	301, 689, 768
BciT130I	CCWGG	1 cut(s)	533
BcoDI	GTCTC	2 cut(s)	24, 260
BfaI	CTAG	2 cut(s)	369, 746
BfmI	CTRYAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	618
BglII	AGATCT	1 cut(s)	578
BisI	GCNGC	3 cut(s)	289, 387, 529
BlsI	GCNGC	3 cut(s)	290, 388, 530
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	2 cut(s)	372, 605
BmgBI	CACGTC	1 cut(s)	459
BmgT120I	GGNCC	3 cut(s)	372, 491, 605
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	4 cut(s)	85, 310, 355, 784
BoxI	GACNNNNGTC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	2 cut(s)	261, 303
BsaBI	GATNNNNATC	2 cut(s)	402, 798
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse8I	GATNNNNATC	2 cut(s)	402, 798
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	61, 325
BseJI	GATNNNNATC	2 cut(s)	402, 798
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	252, 294
BseRI	GAGGAG	3 cut(s)	222, 278, 551
BseXI	GCAGC	3 cut(s)	275, 373, 540
BshFI	GGCC	3 cut(s)	492, 704, 783
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	2 cut(s)	24, 260
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	492, 704, 783
Bsp1407I	TGTACA	2 cut(s)	58, 252
Bsp143I	GATC	5 cut(s)	397, 403, 508, 578, 676
BspANI	GGCC	3 cut(s)	492, 704, 783
BspCNI	CTCAG	2 cut(s)	253, 295
BspLI	GGNNCC	1 cut(s)	374
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	411
BsrGI	TGTACA	2 cut(s)	58, 252
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	5 cut(s)	397, 403, 508, 578, 676
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	1 cut(s)	752
Bst6I	CTCTTC	1 cut(s)	225
BstAUI	TGTACA	2 cut(s)	58, 252
BstC8I	GCNNGC	2 cut(s)	118, 818
BstDEI	CTNAG	4 cut(s)	261, 303, 407, 453
BstF5I	GGATG	2 cut(s)	61, 325
BstH2I	RGCGCY	1 cut(s)	618
BstHHI	GCGC	1 cut(s)	617
BstKTI	GATC	5 cut(s)	400, 406, 511, 581, 679
BstMAI	GTCTC	2 cut(s)	24, 260
BstMBI	GATC	5 cut(s)	397, 403, 508, 578, 676
BstNI	CCWGG	1 cut(s)	533
BstPAI	GACNNNNGTC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	531
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	275, 373, 540
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	2 cut(s)	403, 578
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	2 cut(s)	403, 578
BsuRI	GGCC	3 cut(s)	492, 704, 783
BtrI	CACGTC	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	61, 325
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	231, 255
Cac8I	GCNNGC	2 cut(s)	118, 818
CfoI	GCGC	1 cut(s)	617
Cfr13I	GGNCC	3 cut(s)	372, 491, 605
Csp6I	GTAC	3 cut(s)	59, 212, 253
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	3 cut(s)	59, 212, 253
DdeI	CTNAG	4 cut(s)	261, 303, 407, 453
DpnI	GATC	5 cut(s)	399, 405, 510, 580, 678
DpnII	GATC	5 cut(s)	397, 403, 508, 578, 676
DraI	TTTAAA	1 cut(s)	12
EaeI	YGGCCR	2 cut(s)	702, 781
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	372, 605
Eco57I	CTGAAG	2 cut(s)	605, 713
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	531
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	382
FaiI	YATR	7 cut(s)	246, 380, 395, 446, 701, 713, 735
FatI	CATG	1 cut(s)	378
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	3 cut(s)	289, 387, 529
FokI	GGATG	2 cut(s)	48, 332
Fsp4HI	GCNGC	3 cut(s)	289, 387, 529
FspBI	CTAG	2 cut(s)	369, 746
GlaI	GCGC	1 cut(s)	616
GluI	GCNGC	3 cut(s)	289, 387, 529
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	618
HaeIII	GGCC	3 cut(s)	492, 704, 783
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	617
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	615
HinP1I	GCGC	1 cut(s)	615
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	3 cut(s)	217, 475, 559
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	3 cut(s)	253, 283, 757
Hpy188I	TCNGA	5 cut(s)	314, 624, 667, 721, 824
Hpy188III	TCNNGA	2 cut(s)	401, 746
Hpy8I	GTNNAC	3 cut(s)	253, 283, 757
Hpy99I	CGWCG	2 cut(s)	710, 816
HpyAV	CCTTC	4 cut(s)	516, 629, 634, 688
HpyCH4III	ACNGT	1 cut(s)	752
HpyCH4IV	ACGT	3 cut(s)	341, 458, 805
HpyCH4V	TGCA	6 cut(s)	98, 116, 248, 346, 389, 797
HpyF3I	CTNAG	4 cut(s)	261, 303, 407, 453
HpySE526I	ACGT	3 cut(s)	341, 458, 805
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	615
Kzo9I	GATC	5 cut(s)	397, 403, 508, 578, 676
Lsp1109I	GCAGC	3 cut(s)	275, 373, 540
LweI	GCATC	4 cut(s)	85, 310, 355, 784
MaeI	CTAG	2 cut(s)	369, 746
MaeII	ACGT	3 cut(s)	341, 458, 805
MaeIII	GTNAC	2 cut(s)	197, 337
MalI	GATC	5 cut(s)	399, 405, 510, 580, 678
MboI	GATC	5 cut(s)	397, 403, 508, 578, 676
MboII	GAAGA	5 cut(s)	40, 104, 242, 307, 588
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	2 cut(s)	403, 578
MluCI	AATT	4 cut(s)	102, 241, 483, 723
MlyI	GAGTC	2 cut(s)	469, 553
MmeI	TCCRAC	1 cut(s)	216
MroXI	GAANNNNTTC	2 cut(s)	191, 423
MseI	TTAA	2 cut(s)	11, 671
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	533
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	533
NdeII	GATC	5 cut(s)	397, 403, 508, 578, 676
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	2 cut(s)	197, 337
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PctI	GAATGC	1 cut(s)	118
PdmI	GAANNNNTTC	2 cut(s)	191, 423
PfeI	GAWTC	1 cut(s)	217
PflFI	GACNNNGTC	1 cut(s)	752
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	290, 388, 530
PleI	GAGTC	2 cut(s)	469, 553
PpsI	GAGTC	2 cut(s)	469, 553
PpuMI	RGGWCCY	1 cut(s)	372
PshAI	GACNNNNGTC	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	531
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	3 cut(s)	372, 491, 605
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	403, 578
PsyI	GACNNNGTC	1 cut(s)	752
RsaI	GTAC	3 cut(s)	60, 213, 254
RsaNI	GTAC	3 cut(s)	59, 212, 253
SaqAI	TTAA	2 cut(s)	11, 671
SatI	GCNGC	3 cut(s)	289, 387, 529
Sau3AI	GATC	5 cut(s)	397, 403, 508, 578, 676
Sau96I	GGNCC	3 cut(s)	372, 491, 605
SchI	GAGTC	2 cut(s)	469, 553
ScrFI	CCNGG	1 cut(s)	533
SetI	ASST	8 cut(s)	344, 426, 461, 601, 636, 693, 745, 808
SfaNI	GCATC	4 cut(s)	85, 310, 355, 784
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	372, 605
Sse9I	AATT	4 cut(s)	102, 241, 483, 723
SspMI	CTAG	2 cut(s)	369, 746
StyD4I	CCNGG	1 cut(s)	531
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	752
TaiI	ACGT	3 cut(s)	344, 461, 808
TaqI	TCGA	2 cut(s)	630, 708
TasI	AATT	4 cut(s)	102, 241, 483, 723
TatI	WGTACW	3 cut(s)	58, 211, 252
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	11, 671
Tru9I	TTAA	2 cut(s)	11, 671
TscAI	CASTG	2 cut(s)	231, 255
TseFI	GTSAC	2 cut(s)	197, 337
TseI	GCWGC	3 cut(s)	288, 386, 528
Tsp45I	GTSAC	2 cut(s)	197, 337
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	231, 255
Tth111I	GACNNNGTC	1 cut(s)	752
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	372, 605
XbaI	TCTAGA	1 cut(s)	745
XmiI	GTMKAC	1 cut(s)	756
XmnI	GAANNNNTTC	2 cut(s)	191, 423
XspI	CTAG	2 cut(s)	369, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.