Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012796

Physical Location & Seq

Genomic Coordinates Reverse (-)

3560002 .. 3561787

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTTGGTTTAAAGAAGTCCCCGTTAAAGGCTGCTAAGCGTAACTCAGTTGACCCTCTATATCCTGCTTCCTCGGGCTCAAACCCGTTTGATGATGAGCCTGCACAAGTTAGACAGAATGAGAAGCATGCACTAGTTGGACAGAATGATAAGCAGGCACTATTTGGACAGAATACTAGCACCAATCCTTTTGATGGTGATCAAGGAAAAGAGAATACTAATTCGTATACATATAAGAGTACTTACGCAGAGAGAAACAAGTACAAAAATGATTTCCGCGATTCAGGAGGCGTTGAAAGTCAATCAGTGCAAGAGTTGGAAAGTTATGCAGTGTATAAGGCTGAGGAGACTACAAACTCAGTCAACAGCTGCCTGAGGATTGCTGAAGATATACGTGAGGATGCTACCAAGACTCTGGTCATGTTGCATCACCAGGGTGACCAAATCACCAGGACCCACTTTGTTGCTGCAGACATTGAACAGGATCTCAGTCGGGGTGAAAAGCTTCTGGGGAGTCTCGGGGGCATCTTCTCTAAAACTTGGAAGCCAAAGAAGGGTCGCACAATAACTGGCCCTGTCATCACAGCAGATGCTGCAATCAAAAGGAGCAGCCAGTCAGAGAGGGAGAAGCTGGGACTGACTCCTGCACCCAAGGGATTATCACATTCACGAACACCACTTCCTGAACCCACCAATGCCCTTCAGAAAGTTGAGGTAGAAAAGGCGAAGCAAGATGATGGACTGTCTGATTTAAGTAATCTGTTGGGAGAGCTGAAGGATATGGCCGTTGACATGGGGTCTGAAATTGATAGGCATAACAAAGCTATAGGTCATATGGATGCTGATGTTGATGAGCTCCACTACCGTGTCAGAGGTGCTACTCAACGTGGTCGTCGCTTGCTCGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

33.46

Weight (kDa)

7.11

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61210 AT5G61210
fragaria_vesca	FvH4_5g14310
malus_domestica	MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica	Prupe.5G201000_v2.0.a1
pyrus_communis	pycom06g17650 pycom14g17240
rosa_chinensis	RchiOBHm_Chr7g0182581
rosa_laevigata	RLG00000005119
rosa_multiflora	Rmu_sc0005811.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271140
rosa_rugosa	Rorug06G0448400
rosa_samantha	Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana	Rw7G004220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	279
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	492
AcoI	YGGCCR	1 cut(s)	783
AcuI	CTGAAG	3 cut(s)	405, 686, 794
AfaI	GTAC	2 cut(s)	241, 263
AfiI	CCNNNNNNNGG	3 cut(s)	28, 194, 554
AgsI	TTSAA	2 cut(s)	296, 479
AhdI	GACNNNNNGTC	1 cut(s)	796
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	432, 449
AleI	CACNNNNGTG	2 cut(s)	435, 864
AloI	GAACNNNNNNTCC	2 cut(s)	664, 696
AluBI	AGCT	6 cut(s)	369, 505, 631, 772, 824, 856
AluI	AGCT	6 cut(s)	369, 505, 631, 772, 824, 856
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	2 cut(s)	341, 521
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	2 cut(s)	73, 518
AoxI	GGCC	2 cut(s)	571, 783
ApeKI	GCWGC	5 cut(s)	32, 369, 467, 593, 609
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	453, 572
AsuHPI	GGTGA	5 cut(s)	209, 422, 439, 449, 509
AvaI	CYCGRG	2 cut(s)	73, 518
AvaII	GGWCC	1 cut(s)	453
AxyI	CCTNAGG	1 cut(s)	374
BanII	GRGCYC	2 cut(s)	80, 858
Bbv12I	GWGCWC	1 cut(s)	858
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	5 cut(s)	19, 356, 454, 580, 621
BccI	CCATC	2 cut(s)	188, 731
BceAI	ACGGC	1 cut(s)	770
BciT130I	CCWGG	2 cut(s)	434, 451
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	341, 521
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	2 cut(s)	134, 177
BfmI	CTRYAG	2 cut(s)	468, 825
BisI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	5 cut(s)	34, 371, 469, 595, 611
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	434, 451
Bme18I	GGWCC	1 cut(s)	453
BmeRI	GACNNNNNGTC	1 cut(s)	796
BmeT110I	CYCGRG	2 cut(s)	73, 518
BmgT120I	GGNCC	2 cut(s)	453, 572
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	2 cut(s)	434, 451
BmsI	GCATC	5 cut(s)	391, 436, 534, 580, 829
BoxI	GACNNNNGTC	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	72, 433, 651
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 194, 554
Bse1I	ACTGG	2 cut(s)	574, 613
Bse21I	CCTNAGG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	434, 451
BseDI	CCNNGG	3 cut(s)	72, 433, 651
BseGI	GGATG	2 cut(s)	406, 844
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	28, 194, 554
BseMII	CTCAG	5 cut(s)	60, 333, 365, 372, 502
BseNI	ACTGG	2 cut(s)	574, 613
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	5 cut(s)	19, 356, 454, 580, 621
BseYI	CCCAGC	1 cut(s)	631
BsgI	GTGCAG	2 cut(s)	87, 630
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	573, 785
BsiHKAI	GWGCWC	1 cut(s)	858
BsiHKCI	CYCGRG	2 cut(s)	73, 518
BslFI	GGGAC	2 cut(s)	4, 648
BslI	CCNNNNNNNGG	3 cut(s)	28, 194, 554
BsmAI	GTCTC	2 cut(s)	341, 521
BsmFI	GGGAC	2 cut(s)	4, 648
BsnI	GGCC	2 cut(s)	573, 785
BsoBI	CYCGRG	2 cut(s)	73, 518
Bsp1286I	GDGCHC	2 cut(s)	80, 858
Bsp143I	GATC	2 cut(s)	199, 484
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	573, 785
BspCNI	CTCAG	5 cut(s)	59, 334, 366, 371, 501
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	455
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	574, 613
BssECI	CCNNGG	3 cut(s)	72, 433, 651
BssMI	GATC	2 cut(s)	199, 484
BssNAI	GTATAC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	651
Bst1107I	GTATAC	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	434, 451
Bst4CI	ACNGT	2 cut(s)	744, 866
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	4 cut(s)	102, 129, 156, 899
BstDEI	CTNAG	6 cut(s)	36, 46, 342, 358, 374, 488
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	406, 844
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	2 cut(s)	202, 487
BstMAI	GTCTC	2 cut(s)	341, 521
BstMBI	GATC	2 cut(s)	199, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	2 cut(s)	434, 451
BstNSI	RCATGY	1 cut(s)	131
BstPAI	GACNNNNGTC	1 cut(s)	416
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	432, 449
BstSFI	CTRYAG	2 cut(s)	468, 825
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	5 cut(s)	19, 356, 454, 580, 621
BstX2I	RGATCY	1 cut(s)	484
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	484
BstZ17I	GTATAC	1 cut(s)	228
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	573, 785
BtsCI	GGATG	2 cut(s)	406, 844
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	312, 336
Cac8I	GCNNGC	4 cut(s)	102, 129, 156, 899
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	453, 572
Csp6I	GTAC	2 cut(s)	240, 262
CviAII	CATG	3 cut(s)	128, 421, 793
CviQI	GTAC	2 cut(s)	240, 262
DdeI	CTNAG	6 cut(s)	36, 46, 342, 358, 374, 488
DpnI	GATC	2 cut(s)	201, 486
DpnII	GATC	2 cut(s)	199, 484
DraI	TTTAAA	1 cut(s)	12
DriI	GACNNNNNGTC	1 cut(s)	796
EaeI	YGGCCR	1 cut(s)	783
Eam1105I	GACNNNNNGTC	1 cut(s)	796
Ecl136II	GAGCTC	1 cut(s)	856
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	80, 858
Eco47I	GGWCC	1 cut(s)	453
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	3 cut(s)	405, 686, 794
Eco81I	CCTNAGG	1 cut(s)	374
Eco88I	CYCGRG	2 cut(s)	73, 518
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	856
EcoO109I	RGGNCCY	1 cut(s)	453
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	432, 449
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	80, 858
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	3 cut(s)	131, 424, 796
FaqI	GGGAC	2 cut(s)	4, 648
FatI	CATG	3 cut(s)	127, 420, 792
FauNDI	CATATG	1 cut(s)	834
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
FokI	GGATG	2 cut(s)	413, 851
FriOI	GRGCYC	2 cut(s)	80, 858
Fsp4HI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
FspBI	CTAG	2 cut(s)	134, 177
GluI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
GsaI	CCCAGC	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	573, 785
Hin1II	CATG	3 cut(s)	131, 424, 796
HincII	GTYRAC	3 cut(s)	52, 364, 790
HindII	GTYRAC	3 cut(s)	52, 364, 790
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	4 cut(s)	281, 412, 514, 640
HphI	GGTGA	5 cut(s)	209, 422, 439, 449, 509
Hpy166II	GTNNAC	4 cut(s)	52, 228, 364, 790
Hpy188I	TCNGA	6 cut(s)	619, 705, 748, 802, 872, 905
Hpy188III	TCNNGA	3 cut(s)	285, 669, 683
Hpy8I	GTNNAC	4 cut(s)	52, 228, 364, 790
Hpy99I	CGWCG	1 cut(s)	897
HpyAV	CCTTC	3 cut(s)	547, 710, 769
HpyCH4III	ACNGT	2 cut(s)	744, 866
HpyCH4IV	ACGT	2 cut(s)	394, 886
HpyCH4V	TGCA	8 cut(s)	104, 131, 310, 329, 427, 470, 596, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	6 cut(s)	36, 46, 342, 358, 374, 488
HpySE526I	ACGT	2 cut(s)	394, 886
Hsp92II	CATG	3 cut(s)	131, 424, 796
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	199, 484
LmnI	GCTCC	2 cut(s)	606, 861
Lsp1109I	GCAGC	5 cut(s)	19, 356, 454, 580, 621
LweI	GCATC	5 cut(s)	391, 436, 534, 580, 829
MaeI	CTAG	2 cut(s)	134, 177
MaeII	ACGT	2 cut(s)	394, 886
MaeIII	GTNAC	2 cut(s)	41, 437
MalI	GATC	2 cut(s)	201, 486
MboI	GATC	2 cut(s)	199, 484
MboII	GAAGA	2 cut(s)	398, 520
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	2 cut(s)	80, 858
MluCI	AATT	2 cut(s)	220, 804
MlyI	GAGTC	3 cut(s)	406, 523, 634
MmeI	TCCRAC	2 cut(s)	118, 297
MnlI	CCTC	9 cut(s)	66, 82, 281, 337, 369, 391, 615, 706, 866
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	3 cut(s)	11, 26, 752
MslI	CAYNNNNRTG	3 cut(s)	435, 837, 864
MspA1I	CMGCKG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	434, 451
MvaI	CCWGG	2 cut(s)	434, 451
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeI	CATATG	1 cut(s)	834
NdeII	GATC	2 cut(s)	199, 484
NlaIII	CATG	3 cut(s)	131, 424, 796
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	131
OliI	CACNNNNGTG	2 cut(s)	435, 864
PaeI	GCATGC	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	34, 371, 469, 595, 611
PleI	GAGTC	3 cut(s)	406, 522, 634
PpsI	GAGTC	3 cut(s)	406, 522, 634
Ppu21I	YACGTR	1 cut(s)	395
PpuMI	RGGWCCY	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	432, 449
PspEI	GGTNACC	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	2 cut(s)	432, 449
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	2 cut(s)	453, 572
PspPPI	RGGWCCY	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	369
RsaI	GTAC	2 cut(s)	241, 263
RsaNI	GTAC	2 cut(s)	240, 262
RseI	CAYNNNNRTG	3 cut(s)	435, 837, 864
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	11, 26, 752
SatI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
Sau3AI	GATC	2 cut(s)	199, 484
Sau96I	GGNCC	2 cut(s)	453, 572
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	3 cut(s)	406, 523, 634
ScrFI	CCNGG	2 cut(s)	434, 451
SduI	GDGCHC	2 cut(s)	80, 858
SfaNI	GCATC	5 cut(s)	391, 436, 534, 580, 829
SfcI	CTRYAG	2 cut(s)	468, 825
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	3 cut(s)	435, 837, 864
SpeI	ACTAGT	1 cut(s)	133
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	2 cut(s)	220, 804
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	2 cut(s)	134, 177
SstI	GAGCTC	1 cut(s)	858
StyD4I	CCNGG	2 cut(s)	432, 449
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	744, 866
TaiI	ACGT	2 cut(s)	397, 889
TasI	AATT	2 cut(s)	220, 804
TatI	WGTACW	2 cut(s)	239, 261
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	11, 26, 752
Tru9I	TTAA	3 cut(s)	11, 26, 752
TscAI	CASTG	2 cut(s)	312, 336
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	5 cut(s)	32, 369, 467, 593, 609
Tsp45I	GTSAC	1 cut(s)	437
TspRI	CASTG	2 cut(s)	312, 336
VpaK11BI	GGWCC	1 cut(s)	453
XceI	RCATGY	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	2 cut(s)	134, 177
ZrmI	AGTACT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.