Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012796

Physical Location & Seq

Genomic Coordinates Reverse (-)

16139441 .. 16142751

Gene Structure 3311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G201000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTTGGCTTAAAGAAGTCTCCTTTGAAGGCTGCTAAACATATCACAGTTAATCCTGCTTCTTCTGGCTCAAACCCTTTTGAAAATGCGCCAGTTGGACAGAACGCTAGCACCAATCCATTTGATGATGGTCAAGGAGAAGAGAAATATTCTTCATATTCATACAAGACTACGTTGACAGAGAGAAACAAGTACAAGAATGATTTCCGTGATACAGGAGGAGTAGAGAATCAATCAGTGGAAGAGTTGGAGAACTATGCAGTGTACAAGGCTGAGGAGACTACAAAATCAGTCAACGGCTGCCTGAAGATTGCTGAAGAAATAAGAGAGGATGCTACCAAAACTTTGGTCACTTTGCATCAGCAGGGGGAACAAATCACTAGGTCCCACATGGTCGCTGCAGACATTGATCAGGATCTTAGTCGGGGTGAAAAACTTTTAGGAAGTCTTGGGGGCATCTTCTCTAAGACTTGGAAGCCAAAGAAGACTCGCCCAATAAGTGGCCCTGTCATCACAGGAGATAATGCAGTCAGAAGGGGCGGCCAATTGGAGGAGAGGGAGAAGTTGGGACTGACTTCTGCACCCAAGGGAAGGTCAACTCCACAAACACTACCTCCTGGACCTGTCAATGCCCTTCAGAAAGTTGAGTTAGAGAAGGCGAAGCAAGATGATGGATTGTCGGATTTAAGTGATCTGTTGGGAGAGCTGAAGGATATGGCCGTTGACATGGGTTCTGAAATTGAGAGGCATAACAAAGCTCTGGGCCATCTCTATGATGATGTTGATGAGCTAAATGTTCGTGTTAGAGGTGCAAATCAACGCGGTCGTCGTTTGCTTGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

30.82

Weight (kDa)

6.56

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61210 AT5G61210
fragaria_vesca	FvH4_5g14310
malus_domestica	MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica	Prupe.5G201000_v2.0.a1
pyrus_communis	pycom06g17650 pycom14g17240
rosa_chinensis	RchiOBHm_Chr7g0182581
rosa_laevigata	RLG00000005119
rosa_multiflora	Rmu_sc0005811.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271140
rosa_rugosa	Rorug06G0448400
rosa_samantha	Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana	Rw7G004220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccII	CGCG	1 cut(s)	822
AciI	CCGC	2 cut(s)	540, 822
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	2 cut(s)	541, 717
AcuI	CTGAAG	4 cut(s)	326, 336, 620, 728
AfaI	GTAC	2 cut(s)	194, 266
AfiI	CCNNNNNNNGG	3 cut(s)	500, 550, 591
AgsI	TTSAA	2 cut(s)	28, 83
AjnI	CCWGG	1 cut(s)	616
AluBI	AGCT	3 cut(s)	706, 758, 790
AluI	AGCT	3 cut(s)	706, 758, 790
Alw26I	GTCTC	2 cut(s)	24, 272
AlwI	GGATC	1 cut(s)	423
AoxI	GGCC	4 cut(s)	502, 541, 717, 763
ApeKI	GCWGC	3 cut(s)	32, 300, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	4 cut(s)	384, 503, 620, 763
AsuHPI	GGTGA	1 cut(s)	440
AsuNHI	GCTAGC	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	384, 620
BbsI	GAAGAC	1 cut(s)	491
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	19, 287, 385
BccI	CCATC	3 cut(s)	122, 665, 774
BceAI	ACGGC	2 cut(s)	313, 704
BciT130I	CCWGG	1 cut(s)	618
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	24, 272
BfaI	CTAG	2 cut(s)	108, 381
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	4 cut(s)	33, 301, 399, 541
BlsI	GCNGC	4 cut(s)	34, 302, 400, 542
Bme1390I	CCNGG	1 cut(s)	618
Bme18I	GGWCC	2 cut(s)	384, 620
BmgT120I	GGNCC	4 cut(s)	384, 503, 620, 763
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	3 cut(s)	322, 367, 465
BmtI	GCTAGC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	585
BsaXI	ACNNNNNCTCC	2 cut(s)	598, 628
Bsc4I	CCNNNNNNNGG	3 cut(s)	500, 550, 591
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	1 cut(s)	337
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	3 cut(s)	500, 550, 591
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	3 cut(s)	234, 290, 566
BseXI	GCAGC	3 cut(s)	19, 287, 385
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	1 cut(s)	822
Bsh1285I	CGRYCG	1 cut(s)	826
BshFI	GGCC	4 cut(s)	504, 543, 719, 765
BsiEI	CGRYCG	1 cut(s)	826
BslFI	GGGAC	2 cut(s)	370, 582
BslI	CCNNNNNNNGG	3 cut(s)	500, 550, 591
BsmAI	GTCTC	2 cut(s)	24, 272
BsmFI	GGGAC	2 cut(s)	370, 582
BsnI	GGCC	4 cut(s)	504, 543, 719, 765
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	409, 415, 691
BspACI	CCGC	2 cut(s)	540, 822
BspANI	GGCC	4 cut(s)	504, 543, 719, 765
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	1 cut(s)	403
BspOI	GCTAGC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	423
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	3 cut(s)	409, 415, 691
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	135, 237
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	273, 419, 465
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	412, 418, 694
BstMAI	GTCTC	2 cut(s)	24, 272
BstMBI	GATC	3 cut(s)	409, 415, 691
BstMCI	CGRYCG	1 cut(s)	826
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	616
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	3 cut(s)	19, 287, 385
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	4 cut(s)	504, 543, 719, 765
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	243, 267
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	4 cut(s)	384, 503, 620, 763
Csp6I	GTAC	2 cut(s)	193, 265
CviAII	CATG	2 cut(s)	391, 727
CviQI	GTAC	2 cut(s)	193, 265
DdeI	CTNAG	3 cut(s)	273, 419, 465
DpnI	GATC	3 cut(s)	411, 417, 693
DpnII	GATC	3 cut(s)	409, 415, 691
EaeI	YGGCCR	2 cut(s)	541, 717
Eam1104I	CTCTTC	2 cut(s)	135, 237
EarI	CTCTTC	2 cut(s)	135, 237
Eco130I	CCWWGG	1 cut(s)	585
Eco47I	GGWCC	2 cut(s)	384, 620
Eco57I	CTGAAG	4 cut(s)	326, 336, 620, 728
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	2 cut(s)	394, 730
FaiI	YATR	9 cut(s)	42, 157, 163, 258, 392, 716, 728, 750, 774
FaqI	GGGAC	2 cut(s)	370, 582
FatI	CATG	2 cut(s)	390, 726
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	33, 301, 399, 541
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	33, 301, 399, 541
FspBI	CTAG	2 cut(s)	108, 381
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	4 cut(s)	33, 301, 399, 541
HaeIII	GGCC	4 cut(s)	504, 543, 719, 765
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	394, 730
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	4 cut(s)	177, 295, 597, 724
HindII	GTYRAC	4 cut(s)	177, 295, 597, 724
HinfI	GANTC	2 cut(s)	229, 487
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	5 cut(s)	177, 265, 295, 597, 724
Hpy188I	TCNGA	4 cut(s)	533, 639, 682, 736
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	5 cut(s)	177, 265, 295, 597, 724
Hpy99I	CGWCG	1 cut(s)	831
HpyAV	CCTTC	6 cut(s)	22, 528, 585, 644, 649, 703
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	6 cut(s)	260, 358, 401, 527, 581, 812
HpyF3I	CTNAG	3 cut(s)	273, 419, 465
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	394, 730
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	409, 415, 691
Lsp1109I	GCAGC	3 cut(s)	19, 287, 385
LweI	GCATC	3 cut(s)	322, 367, 465
MaeI	CTAG	2 cut(s)	108, 381
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	411, 417, 693
MboI	GATC	3 cut(s)	409, 415, 691
MboII	GAAGA	8 cut(s)	54, 144, 152, 254, 319, 329, 451, 496
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	415
MluCI	AATT	2 cut(s)	545, 738
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	3 cut(s)	76, 228, 660
MnlI	CCTC	8 cut(s)	212, 268, 322, 544, 549, 624, 738, 800
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	3 cut(s)	11, 51, 686
MslI	CAYNNNNRTG	1 cut(s)	771
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	618
MvnI	CGCG	1 cut(s)	822
NdeII	GATC	3 cut(s)	409, 415, 691
NheI	GCTAGC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	394, 730
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	826
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	500
PfoI	TCCNGGA	1 cut(s)	616
PkrI	GCNGC	4 cut(s)	34, 302, 400, 542
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	4 cut(s)	384, 503, 620, 763
PspPPI	RGGWCCY	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	2 cut(s)	194, 266
RsaNI	GTAC	2 cut(s)	193, 265
RseI	CAYNNNNRTG	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	11, 51, 686
SatI	GCNGC	4 cut(s)	33, 301, 399, 541
Sau3AI	GATC	3 cut(s)	409, 415, 691
Sau96I	GGNCC	4 cut(s)	384, 503, 620, 763
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	618
SetI	ASST	9 cut(s)	176, 386, 596, 616, 625, 708, 760, 792, 811
SfaNI	GCATC	3 cut(s)	322, 367, 465
SfcI	CTRYAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	384, 620
SmiMI	CAYNNNNRTG	1 cut(s)	771
Sse9I	AATT	2 cut(s)	545, 738
SsiI	CCGC	2 cut(s)	540, 822
SspI	AATATT	1 cut(s)	149
SspMI	CTAG	2 cut(s)	108, 381
StyD4I	CCNGG	1 cut(s)	616
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	176
TasI	AATT	2 cut(s)	545, 738
TatI	WGTACW	2 cut(s)	192, 264
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	3 cut(s)	11, 51, 686
Tru9I	TTAA	3 cut(s)	11, 51, 686
TscAI	CASTG	2 cut(s)	243, 267
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	32, 300, 398
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	144, 150
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	243, 267
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	2 cut(s)	384, 620
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	108, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.