Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012796

Physical Location & Seq

Genomic Coordinates Forward (+)

65144136 .. 65146569

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTTGGTTTAAAGAAGTCCCCGTTAAAGGCTGCTAAGCGTAACTCAGTTGACCCTCTATATCCTGCTTCCTCGGGCTCAAACCCGTTTGATGATGAGCCTGCACAAGTTAGACGGAATGAGAAGCATGCACTAGTTGGACAGAATGATAAGCAGGCACTATTTGGACAGAATACCAGCACCAATCCTTTTGATGATGATCAAGGAAAAGAGAATACTAATTCGTATACATATAAGAGTACTTACGCAGAGAGAAACATGTACAAAAATGATTTCCGCGATTCAGGAGGTGTTGAAAATCAATCAGTGCAAGAGTTGGAAAGTTATGCAGTGTATAAGGCTGAGGAGACTACAAACTCAGTCAACAGCTGCCTGAGGATTGCTGAAGATATTCGTGAGGATGCTACCAAGACTCTGGTCATGTTGCATCACCAGGGTGACCAAATCACCAGGACCCACTTTGTTGCTGCTGACATTGAACAGGATCTCAGTCGGGGTGAAAAGCTTCTGGGGAGTCTTGGGGGCATCTTCTCTAAGACTTGGAAGCCAAAGAAGGGTCGCACAATAACTGGCCCTGTCATCACAGCAGATGCTGCAATCAAAAGGAGCAGCCAGTTGGAGAGGGAGAAGCTGGGACTGACTTCTGCACCCAAGGGATTGTCACATTCACGAACACCACCTCCTGAACCCACCAATGCCCTTCAGAAAGTTGAGGTTTGTAGTTCTTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.0

Weight (kDa)

6.98

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61210 AT5G61210
fragaria_vesca	FvH4_5g14310
malus_domestica	MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica	Prupe.5G201000_v2.0.a1
pyrus_communis	pycom06g17650 pycom14g17240
rosa_chinensis	RchiOBHm_Chr7g0182581
rosa_laevigata	RLG00000005119
rosa_multiflora	Rmu_sc0005811.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271140
rosa_rugosa	Rorug06G0448400
rosa_samantha	Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana	Rw7G004220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	279
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	492
AcuI	CTGAAG	2 cut(s)	405, 686
AfaI	GTAC	2 cut(s)	241, 263
AfiI	CCNNNNNNNGG	2 cut(s)	28, 554
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	296, 479
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	432, 449
AleI	CACNNNNGTG	1 cut(s)	435
AloI	GAACNNNNNNTCC	2 cut(s)	664, 696
AluBI	AGCT	3 cut(s)	369, 505, 631
AluI	AGCT	3 cut(s)	369, 505, 631
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	5 cut(s)	32, 369, 467, 593, 609
Asp700I	GAANNNNTTC	2 cut(s)	390, 504
AspS9I	GGNCC	2 cut(s)	453, 572
AsuHPI	GGTGA	4 cut(s)	422, 439, 449, 509
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	453
AxyI	CCTNAGG	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	5 cut(s)	19, 356, 454, 580, 621
BciT130I	CCWGG	2 cut(s)	434, 451
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	341
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	1 cut(s)	134
BisI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	5 cut(s)	34, 371, 469, 595, 611
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	434, 451
Bme18I	GGWCC	1 cut(s)	453
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	453, 572
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	2 cut(s)	434, 451
BmsI	GCATC	4 cut(s)	391, 436, 534, 580
BoxI	GACNNNNGTC	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	342
Bpu1102I	GCTNAGC	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	72, 433, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 554
Bse1I	ACTGG	2 cut(s)	574, 613
Bse21I	CCTNAGG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	434, 451
BseDI	CCNNGG	3 cut(s)	72, 433, 651
BseGI	GGATG	1 cut(s)	406
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	28, 554
BseMII	CTCAG	5 cut(s)	60, 333, 365, 372, 502
BseNI	ACTGG	2 cut(s)	574, 613
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	5 cut(s)	19, 356, 454, 580, 621
BseYI	CCCAGC	1 cut(s)	631
BsgI	GTGCAG	2 cut(s)	87, 630
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	73
BslFI	GGGAC	2 cut(s)	4, 648
BslI	CCNNNNNNNGG	2 cut(s)	28, 554
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	2 cut(s)	4, 648
BsnI	GGCC	1 cut(s)	573
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	199, 484
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	5 cut(s)	59, 334, 366, 371, 501
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	574, 613
BssECI	CCNNGG	3 cut(s)	72, 433, 651
BssMI	GATC	2 cut(s)	199, 484
BssNAI	GTATAC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	651
Bst1107I	GTATAC	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	434, 451
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	102, 129, 156
BstDEI	CTNAG	7 cut(s)	36, 46, 342, 358, 374, 488, 534
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	2 cut(s)	202, 487
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	2 cut(s)	199, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	2 cut(s)	434, 451
BstNSI	RCATGY	2 cut(s)	131, 262
BstPAI	GACNNNNGTC	1 cut(s)	416
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	432, 449
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	5 cut(s)	19, 356, 454, 580, 621
BstX2I	RGATCY	1 cut(s)	484
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	484
BstZ17I	GTATAC	1 cut(s)	228
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	312, 336
Cac8I	GCNNGC	3 cut(s)	102, 129, 156
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	453, 572
Csp6I	GTAC	2 cut(s)	240, 262
CviAII	CATG	3 cut(s)	128, 259, 421
CviQI	GTAC	2 cut(s)	240, 262
DdeI	CTNAG	7 cut(s)	36, 46, 342, 358, 374, 488, 534
DpnI	GATC	2 cut(s)	201, 486
DpnII	GATC	2 cut(s)	199, 484
DraI	TTTAAA	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	453
Eco57I	CTGAAG	2 cut(s)	405, 686
Eco81I	CCTNAGG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	73
Eco91I	GGTNACC	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	453
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	432, 449
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	3 cut(s)	131, 262, 424
FaqI	GGGAC	2 cut(s)	4, 648
FatI	CATG	3 cut(s)	127, 258, 420
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
GsaI	CCCAGC	1 cut(s)	635
HaeIII	GGCC	1 cut(s)	573
Hin1II	CATG	3 cut(s)	131, 262, 424
HincII	GTYRAC	2 cut(s)	52, 364
HindII	GTYRAC	2 cut(s)	52, 364
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	3 cut(s)	281, 412, 514
HphI	GGTGA	4 cut(s)	422, 439, 449, 509
Hpy166II	GTNNAC	3 cut(s)	52, 228, 364
Hpy188I	TCNGA	1 cut(s)	705
Hpy188III	TCNNGA	4 cut(s)	285, 395, 669, 683
Hpy8I	GTNNAC	3 cut(s)	52, 228, 364
HpyAV	CCTTC	2 cut(s)	547, 710
HpyCH4V	TGCA	7 cut(s)	104, 131, 310, 329, 427, 596, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	7 cut(s)	36, 46, 342, 358, 374, 488, 534
Hsp92II	CATG	3 cut(s)	131, 262, 424
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	199, 484
LmnI	GCTCC	1 cut(s)	606
Lsp1109I	GCAGC	5 cut(s)	19, 356, 454, 580, 621
LweI	GCATC	4 cut(s)	391, 436, 534, 580
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	3 cut(s)	41, 437, 660
MalI	GATC	2 cut(s)	201, 486
MboI	GATC	2 cut(s)	199, 484
MboII	GAAGA	2 cut(s)	398, 520
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	1 cut(s)	220
MlyI	GAGTC	2 cut(s)	406, 523
MmeI	TCCRAC	3 cut(s)	118, 297, 597
MnlI	CCTC	9 cut(s)	66, 82, 281, 337, 369, 391, 615, 690, 706
MroXI	GAANNNNTTC	2 cut(s)	390, 504
MseI	TTAA	2 cut(s)	11, 26
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	434, 451
MvaI	CCWGG	2 cut(s)	434, 451
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeII	GATC	2 cut(s)	199, 484
NlaIII	CATG	3 cut(s)	131, 262, 424
NlaIV	GGNNCC	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	437, 660
NspI	RCATGY	2 cut(s)	131, 262
OliI	CACNNNNGTG	1 cut(s)	435
PaeI	GCATGC	1 cut(s)	131
PciI	ACATGT	1 cut(s)	258
PdmI	GAANNNNTTC	2 cut(s)	390, 504
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	34, 371, 469, 595, 611
PleI	GAGTC	2 cut(s)	406, 522
PpsI	GAGTC	2 cut(s)	406, 522
PpuMI	RGGWCCY	1 cut(s)	453
PscI	ACATGT	1 cut(s)	258
PshAI	GACNNNNGTC	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	432, 449
PspEI	GGTNACC	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	2 cut(s)	432, 449
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	2 cut(s)	453, 572
PspPPI	RGGWCCY	1 cut(s)	453
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	369
RsaI	GTAC	2 cut(s)	241, 263
RsaNI	GTAC	2 cut(s)	240, 262
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	11, 26
SatI	GCNGC	5 cut(s)	33, 370, 468, 594, 610
Sau3AI	GATC	2 cut(s)	199, 484
Sau96I	GGNCC	2 cut(s)	453, 572
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	2 cut(s)	406, 523
ScrFI	CCNGG	2 cut(s)	434, 451
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	6 cut(s)	292, 371, 507, 633, 682, 717
SfaNI	GCATC	4 cut(s)	391, 436, 534, 580
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	435
SpeI	ACTAGT	1 cut(s)	133
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	432, 449
StyI	CCWWGG	1 cut(s)	651
TasI	AATT	1 cut(s)	220
TatI	WGTACW	2 cut(s)	239, 261
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	11, 26
Tru9I	TTAA	2 cut(s)	11, 26
TscAI	CASTG	2 cut(s)	312, 336
TseFI	GTSAC	2 cut(s)	437, 660
TseI	GCWGC	5 cut(s)	32, 369, 467, 593, 609
Tsp45I	GTSAC	2 cut(s)	437, 660
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	312, 336
VpaK11BI	GGWCC	1 cut(s)	453
XceI	RCATGY	2 cut(s)	131, 262
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	2 cut(s)	390, 504
XspI	CTAG	1 cut(s)	134
ZrmI	AGTACT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.