Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012796

Physical Location & Seq

Genomic Coordinates Reverse (-)

33322952 .. 33325970

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1199700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTTGGTTTAAAGAAGTCTCCTTTGAAGTCTGCTAAACATATCACACTGAATCCTGTACATCCGGCGTCCTCTGACTCAAACCCTTTTGAAGATGCACCGGTTGGACAGAATACAAGCACTAATCCATTTGATGGCCAGCGAGGGCAGGAGAAGTCTTCTTCCTATGCATACAAGACTGTTTTGACTGAGAGGAACAAATACAAGAATGATTTCCGTGACACAGGAGGAGTACAGAATCAATCAGTGGAAGAGTTGGAGAACTATGCAGTGTACAAGGCTGAGGAGACTACAAAAGCAGTCCACGGCTGCTTGAAGATTGCTGAAGAAATGAGAGAGGATGCTACCAAGACTTTGGTCATGTTGCATCAGCAAGGCGAACAAATCACTAGGACCCACATGGTTGCTGCAGACATGGATCAGGATCTTACTCGGGGTGAAAAGCTTCTGGGAAGTCTTGGGGGCATCTTCTCTAAGACTTGGAAGCCAAAGAGGACTCGCCCAATACGTGGCCCTCTCATTACAGGAGACCATGCAGTCAGAAAGGGCAGCCAGGAGGAGAGGGAGAAGTTGGGACTGGCACCAGCACCCAAGGGAAGATCTAATCCACGAACATTACCTGATGGACCAACCAGCACCCTTCAGAAAGTCGAGGTTGAGAAGGCGAAGCAAGATGATGGATTGTCCAATTTAAGTGATCTATTGGGAGAGCTGAAGGGTATGGCCATTGACATGGGGTCTGAAATTGAGAGGCAAGGCAAATCTCTGGACCATCTCTACGATGATGCTGATGTGTTAAACAGCCGTATTGGAGATGCAAATCTACGTGGTCGTCGCTTGCTCGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0007049 GO:0008150 GO:0009504 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009612 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0022402 GO:0031224 GO:0032506 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051704 GO:0051707 GO:0061024 GO:0061025 GO:0061640 GO:0071840 GO:0071944 GO:0097305 GO:1901700 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko04130 ko04140 ko04721 ko04911 map04130 map04140 map04721 map04911

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

31.22

Weight (kDa)

8.44

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012796)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61210 AT5G61210
fragaria_vesca	FvH4_5g14310
malus_domestica	MD06G1199700.v1.1 MD14G1208700.v1.1
prunus_persica	Prupe.5G201000_v2.0.a1
pyrus_communis	pycom06g17650 pycom14g17240
rosa_chinensis	RchiOBHm_Chr7g0182581
rosa_laevigata	RLG00000005119
rosa_multiflora	Rmu_sc0005811.1_g000006
rosa_roxburghii	Rroxscaffold_3G00271140
rosa_rugosa	Rorug06G0448400
rosa_samantha	Rh7AG052100 Rh7BG051200 Rh7CG053200 Rh7DG051200
rosa_wichuraiana	Rw7G004220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	580
AccB7I	CCANNNNNTGG	2 cut(s)	134, 509
AclWI	GGATC	2 cut(s)	426, 432
AcoI	YGGCCR	2 cut(s)	136, 723
AcuI	CTGAAG	3 cut(s)	345, 626, 734
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	3 cut(s)	60, 234, 275
AfiI	CCNNNNNNNGG	2 cut(s)	134, 509
AgeI	ACCGGT	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	28, 92, 316
AhdI	GACNNNNNGTC	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	2 cut(s)	445, 712
AluI	AGCT	2 cut(s)	445, 712
Alw26I	GTCTC	3 cut(s)	24, 281, 522
AlwI	GGATC	2 cut(s)	426, 432
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	3 cut(s)	136, 511, 723
ApeKI	GCWGC	3 cut(s)	309, 407, 549
AsiGI	ACCGGT	1 cut(s)	100
Asp700I	GAANNNNTTC	2 cut(s)	212, 444
AspS9I	GGNCC	4 cut(s)	393, 512, 626, 769
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	3 cut(s)	393, 626, 769
BalI	TGGCCA	2 cut(s)	138, 725
BanI	GGYRCC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	296, 394, 561
BccI	CCATC	4 cut(s)	128, 617, 671, 780
BceAI	ACGGC	2 cut(s)	322, 789
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	3 cut(s)	24, 281, 522
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	408
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	3 cut(s)	310, 408, 550
BlsI	GCNGC	3 cut(s)	311, 409, 551
Bme1390I	CCNGG	1 cut(s)	554
Bme18I	GGWCC	3 cut(s)	393, 626, 769
BmeRI	GACNNNNNGTC	1 cut(s)	736
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	4 cut(s)	393, 512, 626, 769
BmiI	GGNNCC	2 cut(s)	395, 582
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	6 cut(s)	85, 331, 376, 474, 775, 805
BoxI	GACNNNNGTC	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	282
BsaAI	YACGTR	2 cut(s)	509, 827
BsaBI	GATNNNNATC	2 cut(s)	423, 819
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	304, 591
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 509
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	582
Bse8I	GATNNNNATC	2 cut(s)	423, 819
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	2 cut(s)	304, 591
BseGI	GGATG	2 cut(s)	61, 346
BseJI	GATNNNNATC	2 cut(s)	423, 819
BseLI	CCNNNNNNNGG	2 cut(s)	134, 509
BseMII	CTCAG	2 cut(s)	180, 273
BseNI	ACTGG	1 cut(s)	582
BseRI	GAGGAG	3 cut(s)	243, 299, 572
BseXI	GCAGC	3 cut(s)	296, 394, 561
BshFI	GGCC	3 cut(s)	138, 513, 725
BshNI	GGYRCC	1 cut(s)	580
BshTI	ACCGGT	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	65, 101
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	2 cut(s)	134, 509
BsmAI	GTCTC	3 cut(s)	24, 281, 522
BsmFI	GGGAC	1 cut(s)	588
BsnI	GGCC	3 cut(s)	138, 513, 725
Bso31I	GGTCTC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	432
Bsp1407I	TGTACA	2 cut(s)	58, 273
Bsp143I	GATC	4 cut(s)	418, 424, 599, 697
BspANI	GGCC	3 cut(s)	138, 513, 725
BspCNI	CTCAG	2 cut(s)	181, 274
BspLI	GGNNCC	2 cut(s)	395, 582
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	2 cut(s)	426, 432
BspT107I	GGYRCC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	100
BsrGI	TGTACA	2 cut(s)	58, 273
BsrI	ACTGG	1 cut(s)	582
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	304, 591
BssMI	GATC	4 cut(s)	418, 424, 599, 697
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	68
BstAUI	TGTACA	2 cut(s)	58, 273
BstBAI	YACGTR	2 cut(s)	509, 827
BstC8I	GCNNGC	2 cut(s)	140, 839
BstDEI	CTNAG	3 cut(s)	189, 282, 474
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	61, 346
BstKTI	GATC	4 cut(s)	421, 427, 602, 700
BstMAI	GTCTC	3 cut(s)	24, 281, 522
BstMBI	GATC	4 cut(s)	418, 424, 599, 697
BstNI	CCWGG	1 cut(s)	554
BstPAI	GACNNNNGTC	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	296, 394, 561
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	424, 599
BstXI	CCANNNNNNTGG	2 cut(s)	355, 733
BstYI	RGATCY	2 cut(s)	424, 599
BsuRI	GGCC	3 cut(s)	138, 513, 725
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	61, 346
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	47, 252, 276
Cac8I	GCNNGC	2 cut(s)	140, 839
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	4 cut(s)	393, 512, 626, 769
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	59, 233, 274
CspAI	ACCGGT	1 cut(s)	100
CviAII	CATG	5 cut(s)	361, 400, 415, 533, 733
CviQI	GTAC	3 cut(s)	59, 233, 274
DdeI	CTNAG	3 cut(s)	189, 282, 474
DpnI	GATC	4 cut(s)	420, 426, 601, 699
DpnII	GATC	4 cut(s)	418, 424, 599, 697
DraI	TTTAAA	1 cut(s)	12
DrdI	GACNNNNNNGTC	1 cut(s)	536
DriI	GACNNNNNGTC	1 cut(s)	736
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	2 cut(s)	136, 723
Eam1104I	CTCTTC	1 cut(s)	246
Eam1105I	GACNNNNNGTC	1 cut(s)	736
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	522
Eco47I	GGWCC	3 cut(s)	393, 626, 769
Eco57I	CTGAAG	3 cut(s)	345, 626, 734
Eco88I	CYCGRG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	5 cut(s)	364, 403, 418, 536, 736
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	5 cut(s)	360, 399, 414, 532, 732
Fnu4HI	GCNGC	3 cut(s)	310, 408, 550
FokI	GGATG	2 cut(s)	48, 353
Fsp4HI	GCNGC	3 cut(s)	310, 408, 550
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	3 cut(s)	310, 408, 550
HaeIII	GGCC	3 cut(s)	138, 513, 725
HapII	CCGG	2 cut(s)	65, 101
HgaI	GACGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	364, 403, 418, 536, 736
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	4 cut(s)	52, 77, 238, 496
HpaII	CCGG	2 cut(s)	65, 101
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	274, 304
Hpy188I	TCNGA	5 cut(s)	76, 542, 645, 742, 845
Hpy188III	TCNNGA	2 cut(s)	422, 767
Hpy8I	GTNNAC	2 cut(s)	274, 304
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	3 cut(s)	650, 655, 709
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	508, 826
HpyCH4V	TGCA	7 cut(s)	98, 170, 269, 367, 410, 536, 818
HpyF3I	CTNAG	3 cut(s)	189, 282, 474
HpySE526I	ACGT	2 cut(s)	508, 826
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	5 cut(s)	364, 403, 418, 536, 736
Kzo9I	GATC	4 cut(s)	418, 424, 599, 697
Lsp1109I	GCAGC	3 cut(s)	296, 394, 561
LweI	GCATC	6 cut(s)	85, 331, 376, 474, 775, 805
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	2 cut(s)	508, 826
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	4 cut(s)	420, 426, 601, 699
MboI	GATC	4 cut(s)	418, 424, 599, 697
MboII	GAAGA	8 cut(s)	104, 150, 153, 263, 328, 338, 460, 609
MflI	RGATCY	2 cut(s)	424, 599
MlsI	TGGCCA	2 cut(s)	138, 725
MluCI	AATT	2 cut(s)	688, 744
MluNI	TGGCCA	2 cut(s)	138, 725
MlyI	GAGTC	2 cut(s)	71, 490
MmeI	TCCRAC	2 cut(s)	85, 237
Mox20I	TGGCCA	2 cut(s)	138, 725
Mph1103I	ATGCAT	1 cut(s)	172
MroXI	GAANNNNTTC	2 cut(s)	212, 444
MscI	TGGCCA	2 cut(s)	138, 725
MseI	TTAA	3 cut(s)	11, 692, 797
MslI	CAYNNNNRTG	1 cut(s)	731
Msp20I	TGGCCA	2 cut(s)	138, 725
MspI	CCGG	2 cut(s)	65, 101
MspR9I	CCNGG	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	554
NdeII	GATC	4 cut(s)	418, 424, 599, 697
NlaIII	CATG	5 cut(s)	364, 403, 418, 536, 736
NlaIV	GGNNCC	2 cut(s)	395, 582
NmuCI	GTSAC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	505
PdmI	GAANNNNTTC	2 cut(s)	212, 444
PfeI	GAWTC	2 cut(s)	52, 238
PflMI	CCANNNNNTGG	2 cut(s)	134, 509
PinAI	ACCGGT	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	311, 409, 551
PleI	GAGTC	2 cut(s)	71, 490
PpsI	GAGTC	2 cut(s)	71, 490
Ppu21I	YACGTR	2 cut(s)	509, 827
PpuMI	RGGWCCY	1 cut(s)	393
PshAI	GACNNNNGTC	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	395, 582
PspPI	GGNCC	4 cut(s)	393, 512, 626, 769
PspPPI	RGGWCCY	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	424, 599
RsaI	GTAC	3 cut(s)	60, 234, 275
RsaNI	GTAC	3 cut(s)	59, 233, 274
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	3 cut(s)	11, 692, 797
SatI	GCNGC	3 cut(s)	310, 408, 550
Sau3AI	GATC	4 cut(s)	418, 424, 599, 697
Sau96I	GGNCC	4 cut(s)	393, 512, 626, 769
SchI	GAGTC	2 cut(s)	71, 490
ScrFI	CCNGG	1 cut(s)	554
SetI	ASST	6 cut(s)	447, 511, 622, 657, 714, 829
SfaNI	GCATC	6 cut(s)	85, 331, 376, 474, 775, 805
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	3 cut(s)	393, 626, 769
SmiMI	CAYNNNNRTG	1 cut(s)	731
Sse9I	AATT	2 cut(s)	688, 744
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	511, 829
TaqI	TCGA	1 cut(s)	651
TasI	AATT	2 cut(s)	688, 744
TatI	WGTACW	3 cut(s)	58, 232, 273
TfiI	GAWTC	2 cut(s)	52, 238
Tru1I	TTAA	3 cut(s)	11, 692, 797
Tru9I	TTAA	3 cut(s)	11, 692, 797
TscAI	CASTG	3 cut(s)	54, 252, 276
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	3 cut(s)	309, 407, 549
Tsp45I	GTSAC	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	3 cut(s)	54, 252, 276
Van91I	CCANNNNNTGG	2 cut(s)	134, 509
VpaK11BI	GGWCC	3 cut(s)	393, 626, 769
XmnI	GAANNNNTTC	2 cut(s)	212, 444
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.