AT5G61770

Peter Pan-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008352
Physical Location & Seq
Forward (+)
24815541 .. 24817728
2188 bp
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UTR
Exon/CDS
Intron
AT5G61770.2

Sequence Viewer

Length: 1038 bp
ATGGGTCGTTTCAAAAACAATAAGAAGAGTAGGGTCATTGGGAAACCTATTGCGAAGAAAAATCAAGAGGATGTTAGTCATGTCACTGGGGATAAGATTCCCAAGAGTTTTGTCTTCTCAAGAATGAAACTTGCTGGCCCTGTTAAACAACTCCAGATGGATTTGAGGAAGCTCATGCTTCCCTACACTGCTCTCAGTCTTAAGGAGAAGAAGCGGAACACTTTAAGGGACTTTTTGAATGTATCAGGTCCAATGGGTGTTACACATTTCCTTATGCTTTCGAAAACAGCGTCTTCACTGTCTCTTAGAGTAGCAAGAACCCCTCAGGGCCCGACTCTTACCTTCAAAATTCATCAGTATTCCTTAGCATCAGATATAGCTCAGTCTCAGCTTCGACCTAGATGTCCTCAAGATCTTTTCAAGAGTCCTCCTTTGATTGTCCTTTCTGGATTCGGTTCTCAAGAGTTGCATCTGAAACTGGCAACGATTATGTTTCAGAATATATTCCCAGCTATTGATATTAACACTGTCAAGCTCTCCACCTGCCAGAGATTAGTACTCTTGAACTACAACAAAGACACCAAGCTCATTGATTTCCGGCATTATTCTATAAGACTTCAGCCTGTTGGAGTATCTCGTAGGATCAGAAAGTTTGTGCAAAATCATCAGGTTCCAGATCTTAGGAATCTGCAGGATGTTAGTGATTTTGTCACCAAGGCTGGTTACGGATCAGAGAGCGAAGGAGATGAAGAAGCGGCAACAGTGACACTATCATCTGATCTAGGCCGAGTTAACAAAGGTGCCACCAAGAGCGCAGTGAAACTGCAAGAAATTGGACCAAGAATGACTATGCAACTCGTTAAAGTGGAGGAAGGATTGTGTACAGGAGGAATCATATTCAGTGAATATGATGTTGATGGAAAGAAAGAAAAGTTAAAGAAGAAACAGGATGAAGAAGAAGAAGAAGATAGTGAAGAAGAAGGCGAAGAGGGTAGTGAAGAAGATGGGGAAGACATGGATGAGGATTTTGAAGATTGA

Protein Analysis

345

Amino Acids

38.84

Weight (kDa)

8.23

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 48 - 288 8.8e-44 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
AasI GACNNNNNNGTC 1 cut(s) 402
Acc36I ACCTGC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 800
AciI CCGC 2 cut(s) 214, 755
AclWI GGATC 2 cut(s) 650, 736
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 602
AfaI GTAC 2 cut(s) 558, 883
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 6 cut(s) 13, 238, 346, 421, 565, 1031
AluBI AGCT 6 cut(s) 172, 380, 391, 512, 535, 586
AluI AGCT 6 cut(s) 172, 380, 391, 512, 535, 586
Alw26I GTCTC 2 cut(s) 306, 390
AlwI GGATC 2 cut(s) 650, 736
AoxI GGCC 3 cut(s) 136, 328, 784
ApaI GGGCCC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 348
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
Asp700I GAANNNNTTC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 815
AspS9I GGNCC 5 cut(s) 137, 248, 328, 329, 836
AsuHPI GGTGA 1 cut(s) 703
AsuII TTCGAA 1 cut(s) 281
AvaII GGWCC 2 cut(s) 248, 836
AxyI CCTNAGG 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 1 cut(s) 332
BbsI GAAGAC 3 cut(s) 106, 285, 1017
BccI CCATC 3 cut(s) 151, 911, 998
BcoDI GTCTC 2 cut(s) 306, 390
BfaI CTAG 2 cut(s) 399, 782
BfmI CTRYAG 1 cut(s) 689
BfrI CTTAAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 551
BglII AGATCT 2 cut(s) 412, 676
BisI GCNGC 1 cut(s) 756
BlsI GCNGC 1 cut(s) 757
BmcAI AGTACT 1 cut(s) 558
Bme18I GGWCC 2 cut(s) 248, 836
BmgT120I GGNCC 5 cut(s) 137, 248, 328, 329, 836
BmiI GGNNCC 3 cut(s) 330, 672, 802
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 377, 478
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 3 cut(s) 106, 285, 1017
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 364
Bpu14I TTCGAA 1 cut(s) 281
BpuEI CTTGAG 3 cut(s) 103, 393, 444
BsaJI CCNNGG 1 cut(s) 714
Bse1I ACTGG 2 cut(s) 91, 483
Bse21I CCTNAGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 4 cut(s) 76, 700, 955, 1024
BseMII CTCAG 4 cut(s) 208, 338, 395, 401
BseNI ACTGG 2 cut(s) 91, 483
BseSI GKGCMC 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 508
BshFI GGCC 3 cut(s) 138, 330, 786
BshNI GGYRCC 1 cut(s) 800
BsiSI CCGG 1 cut(s) 598
BslFI GGGAC 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 306, 390
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 3 cut(s) 138, 330, 786
Bsp119I TTCGAA 1 cut(s) 281
Bsp120I GGGCCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 332
Bsp1407I TGTACA 1 cut(s) 881
Bsp143I GATC 5 cut(s) 412, 642, 676, 728, 778
BspACI CCGC 2 cut(s) 214, 755
BspANI GGCC 3 cut(s) 138, 330, 786
BspCNI CTCAG 4 cut(s) 207, 337, 394, 400
BspLI GGNNCC 3 cut(s) 330, 672, 802
BspMAI CTGCAG 1 cut(s) 693
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 2 cut(s) 650, 736
BspT104I TTCGAA 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 800
BspTI CTTAAG 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 881
BsrI ACTGG 2 cut(s) 91, 483
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 5 cut(s) 412, 642, 676, 728, 778
BssT1I CCWWGG 1 cut(s) 714
Bst4CI ACNGT 3 cut(s) 300, 529, 763
Bst6I CTCTTC 2 cut(s) 20, 981
BstAFI CTTAAG 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 881
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 7 cut(s) 194, 305, 324, 364, 381, 387, 680
BstF5I GGATG 4 cut(s) 76, 700, 955, 1024
BstHHI GCGC 1 cut(s) 815
BstKTI GATC 5 cut(s) 415, 645, 679, 731, 781
BstMAI GTCTC 2 cut(s) 306, 390
BstMBI GATC 5 cut(s) 412, 642, 676, 728, 778
BstSFI CTRYAG 1 cut(s) 689
BstSLI GKGCMC 1 cut(s) 332
BstV2I GAAGAC 3 cut(s) 106, 285, 1017
BstX2I RGATCY 2 cut(s) 412, 676
BstYI RGATCY 2 cut(s) 412, 676
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 3 cut(s) 138, 330, 786
BtsCI GGATG 4 cut(s) 76, 700, 955, 1024
BtsI GCAGTG 2 cut(s) 186, 822
BtsIMutI CAGTG 7 cut(s) 84, 186, 296, 525, 768, 822, 907
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 815
Cfr13I GGNCC 5 cut(s) 137, 248, 328, 329, 836
CseI GACGC 1 cut(s) 279
Csp6I GTAC 2 cut(s) 557, 882
CviAII CATG 3 cut(s) 80, 175, 1015
CviQI GTAC 2 cut(s) 557, 882
DdeI CTNAG 7 cut(s) 194, 305, 324, 364, 381, 387, 680
DpnI GATC 5 cut(s) 414, 644, 678, 730, 780
DpnII GATC 5 cut(s) 412, 642, 676, 728, 778
DrdI GACNNNNNNGTC 1 cut(s) 402
DseDI GACNNNNNNGTC 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 20, 981
EarI CTCTTC 2 cut(s) 20, 981
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 248, 836
Eco57I CTGAAG 1 cut(s) 602
Eco81I CCTNAGG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 714
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 3 cut(s) 83, 178, 1018
FaqI GGGAC 1 cut(s) 242
FatI CATG 3 cut(s) 79, 174, 1014
Fnu4HI GCNGC 1 cut(s) 756
FokI GGATG 4 cut(s) 83, 707, 962, 1031
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 756
FspBI CTAG 2 cut(s) 399, 782
GlaI GCGC 1 cut(s) 814
GluI GCNGC 1 cut(s) 756
GsaI CCCAGC 1 cut(s) 512
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 3 cut(s) 138, 330, 786
HapII CCGG 1 cut(s) 598
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 815
Hin1II CATG 3 cut(s) 83, 178, 1018
Hin6I GCGC 1 cut(s) 813
HinP1I GCGC 1 cut(s) 813
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 6 cut(s) 97, 334, 424, 450, 685, 891
HpaI GTTAAC 1 cut(s) 793
HpaII CCGG 1 cut(s) 598
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 2 cut(s) 793, 882
Hpy188I TCNGA 6 cut(s) 373, 474, 498, 647, 733, 778
Hpy188III TCNNGA 9 cut(s) 65, 120, 154, 410, 421, 447, 461, 562, 674
Hpy8I GTNNAC 2 cut(s) 793, 882
HpyAV CCTTC 4 cut(s) 352, 734, 866, 974
HpyCH4III ACNGT 3 cut(s) 300, 529, 763
HpyCH4V TGCA 5 cut(s) 469, 658, 691, 826, 853
HpyF3I CTNAG 7 cut(s) 194, 305, 324, 364, 381, 387, 680
Hsp92II CATG 3 cut(s) 83, 178, 1018
HspAI GCGC 1 cut(s) 813
KspAI GTTAAC 1 cut(s) 793
Kzo9I GATC 5 cut(s) 412, 642, 676, 728, 778
LweI GCATC 2 cut(s) 377, 478
MaeI CTAG 2 cut(s) 399, 782
MaeIII GTNAC 5 cut(s) 82, 259, 709, 722, 763
MalI GATC 5 cut(s) 414, 644, 678, 730, 780
MboI GATC 5 cut(s) 412, 642, 676, 728, 778
MflI RGATCY 2 cut(s) 412, 676
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 2 cut(s) 348, 831
MlyI GAGTC 2 cut(s) 328, 433
MmeI TCCRAC 1 cut(s) 607
MnlI CCTC 9 cut(s) 61, 159, 333, 417, 438, 862, 881, 982, 1015
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 7 cut(s) 144, 201, 224, 522, 792, 861, 935
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 598
NdeII GATC 5 cut(s) 412, 642, 676, 728, 778
NlaIII CATG 3 cut(s) 83, 178, 1018
NlaIV GGNNCC 3 cut(s) 330, 672, 802
NmeAIII GCCGAG 1 cut(s) 812
NmuCI GTSAC 3 cut(s) 82, 709, 763
NspV TTCGAA 1 cut(s) 281
PaqCI CACCTGC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 4 cut(s) 97, 450, 685, 891
PkrI GCNGC 1 cut(s) 757
PleI GAGTC 2 cut(s) 328, 432
PpsI GAGTC 2 cut(s) 328, 432
PspFI CCCAGC 1 cut(s) 508
PspN4I GGNNCC 3 cut(s) 330, 672, 802
PspOMI GGGCCC 1 cut(s) 328
PspPI GGNCC 5 cut(s) 137, 248, 328, 329, 836
PstI CTGCAG 1 cut(s) 693
PsuI RGATCY 2 cut(s) 412, 676
RsaI GTAC 2 cut(s) 558, 883
RsaNI GTAC 2 cut(s) 557, 882
SaqAI TTAA 7 cut(s) 144, 201, 224, 522, 792, 861, 935
SatI GCNGC 1 cut(s) 756
Sau3AI GATC 5 cut(s) 412, 642, 676, 728, 778
Sau96I GGNCC 5 cut(s) 137, 248, 328, 329, 836
ScaI AGTACT 1 cut(s) 558
SchI GAGTC 2 cut(s) 328, 433
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 2 cut(s) 377, 478
SfcI CTRYAG 1 cut(s) 689
SfuI TTCGAA 1 cut(s) 281
SinI GGWCC 2 cut(s) 248, 836
SmlI CTYRAG 4 cut(s) 118, 200, 408, 459
SmoI CTYRAG 4 cut(s) 118, 200, 408, 459
Sse9I AATT 2 cut(s) 348, 831
SsiI CCGC 2 cut(s) 214, 755
SspMI CTAG 2 cut(s) 399, 782
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 3 cut(s) 300, 529, 763
TaqI TCGA 2 cut(s) 281, 394
TasI AATT 2 cut(s) 348, 831
TatI WGTACW 2 cut(s) 556, 881
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 4 cut(s) 97, 450, 685, 891
Tru1I TTAA 7 cut(s) 144, 201, 224, 522, 792, 861, 935
Tru9I TTAA 7 cut(s) 144, 201, 224, 522, 792, 861, 935
TscAI CASTG 7 cut(s) 91, 193, 303, 532, 768, 822, 907
TseFI GTSAC 3 cut(s) 82, 709, 763
Tsp45I GTSAC 3 cut(s) 82, 709, 763
TspDTI ATGAA 4 cut(s) 140, 341, 762, 966
TspGWI ACGGA 1 cut(s) 741
TspRI CASTG 7 cut(s) 91, 193, 303, 532, 768, 822, 907
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 248, 836
XapI RAATTY 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 2 cut(s) 399, 782
ZrmI AGTACT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.