Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008352

Physical Location & Seq

Genomic Coordinates Forward (+)

13657553 .. 13660220

Gene Structure 2668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTCGTTTCAATAATAAGAGGAAGCCATTTGTGAAACCAATTGCGAAGAAGAAGTTGGCTACTGTGGACCATATCACTGGTGATAAGATCCCTAAGAGCTTTGTGTTTTCAAGAGGGAGGTTGCCTGGTCCTCTAAGGCAACTAAAAGCTGATTTAAAACAGTTGATGAATCCCCATACTGCTCTCAATCTTAAGGAGAAGAGACGGAACACTCTCAAAGACTTTCTGAATGTTGCTGGGCCTTATGGGGTTACACATTTCCTCATATTGTCGAAAACTCCAACTGCACCCTACCTTAGGGTTGCCACAACTCCTCAAGGGCCCACTCTTACATTTAAAATAGAAGAGTACTCGCTGGCAGTTGACATCAAACATTCTCAAAAGCATCCTAGATGTCCGAAGGATCTTTTCAAGAATCCACCCATGAGTATTCTTTCTGGTTTTGGAAGTGGTGGTGGCCGCCACCATGATAAAGAACCTCCACAGTTGAAGCTCATATCTGCAGCATTTCGGAATCTCTTTCCATCCATTGATGTTAACACTGTGAAACTTTCGTCCTGCCAGAGAATATTGTTGCTTCATTACAACGAAGAAACAAAACTAATTGATTTTAGGCATTACTCTATAAGATTAGAGCCTGTTGGCGTCTCCCGCAGAATAAGCAAATTTGTTCAGAAGCATCAAGTACCTGATTTGAGGAATCTTCAAGACGTGAGTGACTTTGTCACAAAGGCCGGTTATGGATCAGAAAGTGAAGGAGATGAAGAAGCAGCAACAGTAACTTTGGCTAGTGATCTAGGTAGGGTTAATCGGGCTTCTTCAAAAAGTGCTATCAAGCTCCAAGAGATTGGACCCAGGATGACTCTTCGCCTGATTAAGGTTGAGAATGGATTGTGTCAAGGCGCAGTCCTGTTCAGTGAGTATGGTGATGGAAATAAAAAGGAAGACAACCACGAAGACGCTGAAAATGAGGAACATGGTGATGAGGAGGAAGATGATGAAAATGATGAAGTTGATAGTGAGGACGGGGAAGAAGATGATGAGGATATGGAGGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043933 GO:0044085 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

354

Amino Acids

39.83

Weight (kDa)

6.34

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	46 - 294	1.1e-41	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61770 AT5G61770 AT5G61770
fragaria_vesca	FvH4_2g25700
malus_domestica	MD03G1288000.v1.1 MD11G1310300.v1.1
prunus_persica	Prupe.8G261200_v2.0.a1 Prupe.8G261200_v2.0.a1 Prupe.8G261200_v2.0.a1
pyrus_communis	pycom03g22800 pycom11g27110 pycom16g13360
rosa_chinensis	RchiOBHm_Chr6g0293981
rosa_laevigata	RLG00000011910
rosa_multiflora	Rmu_sc0005126.1_g000007 Rmu_sc0005647.1_g000003
rosa_roxburghii	Rroxscaffold_7G00173770
rosa_rugosa	Rorug06G0239800
rosa_samantha	Rh6AG352800 Rh6BG359800 Rh6CG367100 Rh6DG353500
rosa_wichuraiana	Rw6G030740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	463, 655
AclWI	GGATC	3 cut(s)	85, 414, 754
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	2 cut(s)	353, 690
AfiI	CCNNNNNNNGG	2 cut(s)	300, 880
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	6 cut(s)	13, 114, 415, 493, 710, 825
AjiI	CACGTC	1 cut(s)	715
AjnI	CCWGG	2 cut(s)	127, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	4 cut(s)	102, 152, 496, 841
AluI	AGCT	4 cut(s)	102, 152, 496, 841
Alw26I	GTCTC	2 cut(s)	199, 655
AlwI	GGATC	3 cut(s)	85, 414, 754
AoxI	GGCC	4 cut(s)	242, 323, 460, 735
ApaI	GGGCCC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	506, 773
ApoI	RAATTY	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	6 cut(s)	70, 131, 242, 323, 324, 854
AsuHPI	GGTGA	3 cut(s)	95, 941, 995
AvaII	GGWCC	3 cut(s)	70, 131, 854
AxyI	CCTNAGG	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	954, 966
BbvI	GCAGC	2 cut(s)	518, 785
BccI	CCATC	2 cut(s)	535, 926
BciT130I	CCWGG	2 cut(s)	129, 859
BcoDI	GTCTC	2 cut(s)	199, 655
BfaI	CTAG	4 cut(s)	393, 792, 800, 1063
BfmI	CTRYAG	1 cut(s)	504
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	3 cut(s)	463, 507, 774
BlsI	GCNGC	3 cut(s)	464, 508, 775
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	129, 859
Bme18I	GGWCC	3 cut(s)	70, 131, 854
BmgBI	CACGTC	1 cut(s)	715
BmgT120I	GGNCC	6 cut(s)	70, 131, 242, 323, 324, 854
BmiI	GGNNCC	2 cut(s)	325, 856
BmrFI	CCNGG	2 cut(s)	129, 859
BmsI	GCATC	2 cut(s)	397, 691
BpiI	GAAGAC	2 cut(s)	954, 966
BpuEI	CTTGAG	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	857
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 880
Bse118I	RCCGGY	1 cut(s)	737
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	129, 859
BseDI	CCNNGG	1 cut(s)	857
BseGI	GGATG	3 cut(s)	388, 527, 867
BseLI	CCNNNNNNNGG	2 cut(s)	300, 880
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	306, 1004
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	518, 785
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	244, 325, 462, 737
BsiSI	CCGG	1 cut(s)	738
BslI	CCNNNNNNNGG	2 cut(s)	300, 880
BsmAI	GTCTC	2 cut(s)	199, 655
BsmBI	CGTCTC	2 cut(s)	199, 655
BsnI	GGCC	4 cut(s)	244, 325, 462, 737
Bsp120I	GGGCCC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	90, 406, 746, 796
BspACI	CCGC	2 cut(s)	463, 655
BspANI	GGCC	4 cut(s)	244, 325, 462, 737
BspLI	GGNNCC	2 cut(s)	325, 856
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	3 cut(s)	85, 414, 754
BspTI	CTTAAG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	737
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	737
BssECI	CCNNGG	1 cut(s)	857
BssMI	GATC	4 cut(s)	90, 406, 746, 796
BssNI	GRCGYC	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	129, 859
Bst4CI	ACNGT	5 cut(s)	67, 165, 489, 547, 781
Bst6I	CTCTTC	3 cut(s)	197, 342, 873
BstACI	GRCGYC	1 cut(s)	648
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	96, 137, 299
BstENI	CCTNNNNNAGG	2 cut(s)	298, 878
BstF5I	GGATG	3 cut(s)	388, 527, 867
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	4 cut(s)	93, 409, 749, 799
BstMAI	GTCTC	2 cut(s)	199, 655
BstMBI	GATC	4 cut(s)	90, 406, 746, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	654, 663
BstNI	CCWGG	2 cut(s)	129, 859
BstSCI	CCNGG	2 cut(s)	127, 857
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	518, 785
BstV2I	GAAGAC	2 cut(s)	954, 966
BstX2I	RGATCY	2 cut(s)	90, 406
BstXI	CCANNNNNNTGG	2 cut(s)	80, 851
BstYI	RGATCY	2 cut(s)	90, 406
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	4 cut(s)	244, 325, 462, 737
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	388, 527, 867
BtsIMutI	CAGTG	3 cut(s)	78, 543, 925
Cac8I	GCNNGC	1 cut(s)	360
CfoI	GCGC	1 cut(s)	908
Cfr10I	RCCGGY	1 cut(s)	737
Cfr13I	GGNCC	6 cut(s)	70, 131, 242, 323, 324, 854
CseI	GACGC	2 cut(s)	637, 971
Csp6I	GTAC	2 cut(s)	352, 689
CviAII	CATG	3 cut(s)	427, 470, 980
CviQI	GTAC	2 cut(s)	352, 689
DdeI	CTNAG	3 cut(s)	96, 137, 299
DpnI	GATC	4 cut(s)	92, 408, 748, 798
DpnII	GATC	4 cut(s)	90, 406, 746, 796
DraI	TTTAAA	2 cut(s)	159, 340
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	3 cut(s)	197, 342, 873
EarI	CTCTTC	3 cut(s)	197, 342, 873
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	70, 131, 854
Eco81I	CCTNAGG	1 cut(s)	299
EcoNI	CCTNNNNNAGG	2 cut(s)	298, 878
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	127, 857
EcoT38I	GRGCYC	1 cut(s)	327
Esp3I	CGTCTC	2 cut(s)	199, 655
FaeI	CATG	3 cut(s)	430, 473, 983
FatI	CATG	3 cut(s)	426, 469, 979
FauI	CCCGC	1 cut(s)	662
Fnu4HI	GCNGC	3 cut(s)	463, 507, 774
FokI	GGATG	3 cut(s)	375, 514, 874
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	463, 507, 774
FspBI	CTAG	4 cut(s)	393, 792, 800, 1063
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	3 cut(s)	463, 507, 774
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	244, 325, 462, 737
HapII	CCGG	1 cut(s)	738
HgaI	GACGC	2 cut(s)	637, 971
HhaI	GCGC	1 cut(s)	908
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	3 cut(s)	430, 473, 983
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HincII	GTYRAC	2 cut(s)	367, 541
HindII	GTYRAC	2 cut(s)	367, 541
HinfI	GANTC	5 cut(s)	172, 418, 517, 703, 865
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	738
HphI	GGTGA	3 cut(s)	95, 941, 995
Hpy166II	GTNNAC	3 cut(s)	70, 367, 541
Hpy188I	TCNGA	5 cut(s)	231, 402, 516, 678, 751
Hpy188III	TCNNGA	3 cut(s)	114, 415, 710
Hpy8I	GTNNAC	3 cut(s)	70, 367, 541
HpyAV	CCTTC	2 cut(s)	397, 752
HpyCH4III	ACNGT	5 cut(s)	67, 165, 489, 547, 781
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	2 cut(s)	290, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	654, 663
HpyF3I	CTNAG	3 cut(s)	96, 137, 299
HpySE526I	ACGT	1 cut(s)	714
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	3 cut(s)	430, 473, 983
HspAI	GCGC	1 cut(s)	906
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	90, 406, 746, 796
LmnI	GCTCC	1 cut(s)	846
Lsp1109I	GCAGC	2 cut(s)	518, 785
LweI	GCATC	2 cut(s)	397, 691
MaeI	CTAG	4 cut(s)	393, 792, 800, 1063
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	4 cut(s)	253, 719, 727, 781
MalI	GATC	4 cut(s)	92, 408, 748, 798
MboI	GATC	4 cut(s)	90, 406, 746, 796
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	2 cut(s)	90, 406
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	3 cut(s)	42, 606, 668
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	1 cut(s)	308
MseI	TTAA	6 cut(s)	158, 195, 339, 540, 810, 879
MslI	CAYNNNNRTG	1 cut(s)	984
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	1 cut(s)	738
MspR9I	CCNGG	2 cut(s)	129, 859
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	129, 859
MwoI	GCNNNNNNNGC	2 cut(s)	654, 663
NdeII	GATC	4 cut(s)	90, 406, 746, 796
NlaIII	CATG	3 cut(s)	430, 473, 983
NlaIV	GGNNCC	2 cut(s)	325, 856
NmuCI	GTSAC	2 cut(s)	719, 727
PfeI	GAWTC	4 cut(s)	172, 418, 517, 703
PflFI	GACNNNGTC	1 cut(s)	725
PkrI	GCNGC	3 cut(s)	464, 508, 775
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
Psp6I	CCWGG	2 cut(s)	127, 857
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	2 cut(s)	127, 857
PspN4I	GGNNCC	2 cut(s)	325, 856
PspOMI	GGGCCC	1 cut(s)	323
PspPI	GGNCC	6 cut(s)	70, 131, 242, 323, 324, 854
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	90, 406
PsyI	GACNNNGTC	1 cut(s)	725
RsaI	GTAC	2 cut(s)	353, 690
RsaNI	GTAC	2 cut(s)	352, 689
RseI	CAYNNNNRTG	1 cut(s)	984
SaqAI	TTAA	6 cut(s)	158, 195, 339, 540, 810, 879
SatI	GCNGC	3 cut(s)	463, 507, 774
Sau3AI	GATC	4 cut(s)	90, 406, 746, 796
Sau96I	GGNCC	6 cut(s)	70, 131, 242, 323, 324, 854
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	2 cut(s)	129, 859
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	397, 691
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	3 cut(s)	70, 131, 854
SmiMI	CAYNNNNRTG	1 cut(s)	984
SmlI	CTYRAG	2 cut(s)	194, 318
SmoI	CTYRAG	2 cut(s)	194, 318
Sse9I	AATT	3 cut(s)	42, 606, 668
SsiI	CCGC	2 cut(s)	463, 655
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	4 cut(s)	393, 792, 800, 1063
StyD4I	CCNGG	2 cut(s)	127, 857
TaaI	ACNGT	5 cut(s)	67, 165, 489, 547, 781
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	1 cut(s)	275
TasI	AATT	3 cut(s)	42, 606, 668
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	4 cut(s)	172, 418, 517, 703
Tru1I	TTAA	6 cut(s)	158, 195, 339, 540, 810, 879
Tru9I	TTAA	6 cut(s)	158, 195, 339, 540, 810, 879
TscAI	CASTG	3 cut(s)	85, 550, 925
TseFI	GTSAC	2 cut(s)	719, 727
TseI	GCWGC	2 cut(s)	506, 773
Tsp45I	GTSAC	2 cut(s)	719, 727
TspDTI	ATGAA	5 cut(s)	185, 572, 780, 1017, 1026
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	3 cut(s)	85, 550, 925
Tth111I	GACNNNGTC	1 cut(s)	725
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	3 cut(s)	70, 131, 854
XagI	CCTNNNNNAGG	2 cut(s)	298, 878
XapI	RAATTY	1 cut(s)	668
XspI	CTAG	4 cut(s)	393, 792, 800, 1063
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.