Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008352

Physical Location & Seq

Genomic Coordinates Forward (+)

9523127 .. 9525751

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTGGACCATATCACAGGGGATAAAATCCCAAGGAGCTTTGTGTGTTTCCAGATGCAAGTTGCCTGGTCCTCTGAGGCAGCTTCAAGCTGATTTGAGGAAGCTCATGCTTCCCTACACCGCCCTTAAGCTTAAGGAGAAGAGGCGGAACAATCTTAGAGACTTTTTGAATGTGGCCGGGCCTATGGGGGTTACACATTTCCTCATGTTGTCGAAAACTCCAACTGCACCATACGTTAGGGTTGCGAGGACACCTCAAGGCCCAACGCTTACATTTAAGATACAGGAGTACTCTTTGGCGGTTGATATTGCGCGGTCTCAAAAGCGTCCTAGATGCCCGGCAGATCTTTTTAAGAATGCCCCCTTGCCCCACCTCGGGCTCAAGGCCTGGCAATCCCTCACGGGCCTGGCCCTCGGGCCTCCCCCTGCCTTCGGCCTCCCCCACGCTGGAGCGACGCCACCGGCCCTCGGGCTTCCGTTTTGGACCCCTTCCCCCGAGCAAAACCCCACGCTGGGGATGCTCTTACATATTGTTCTTTCTGGTTTTGGGACTGGAGAGCAACATTTGAAGCTCACAACGATACTGTTTCAGAACATCTTTCCAGCCATTGATGTTAACACTGTGAAACTTTCTTCATGCCAAAGAATAGTGTTGCTTAATTACAACAAGGACACAAAACTGATTGATTTCCGGCATTACTCCATAAGATTACAGCCTGTGGGTAGGGTTAATCGGGCTTCCTCTAAAAGTGCCGTCAAGCTTCAAGAGATAGGACCCAGAATGACTCTTCAACTCATGAAGATTGAGGAAGGTTTGTGCACCGGTGGAGTCATCTTCAGTGAATATGGAAATGGCGATGGGAAGAAAAAGGAAGACAAACATGAAGATGAGGAAAACGATGACGAAGATGAAGAAATTGATGATGAAGATGAGGAAAATGATGAAGAAGATGGTGAAGATATCGACGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043933 GO:0044085 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

325

Amino Acids

36.06

Weight (kDa)

6.03

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	25 - 122	3.4e-15	Brix domain
Brix	PF04427	171 - 267	1.1e-19	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61770 AT5G61770 AT5G61770
fragaria_vesca	FvH4_2g25700
malus_domestica	MD03G1288000.v1.1 MD11G1310300.v1.1
prunus_persica	Prupe.8G261200_v2.0.a1 Prupe.8G261200_v2.0.a1 Prupe.8G261200_v2.0.a1
pyrus_communis	pycom03g22800 pycom11g27110 pycom16g13360
rosa_chinensis	RchiOBHm_Chr6g0293981
rosa_laevigata	RLG00000011910
rosa_multiflora	Rmu_sc0005126.1_g000007 Rmu_sc0005647.1_g000003
rosa_roxburghii	Rroxscaffold_7G00173770
rosa_rugosa	Rorug06G0239800
rosa_samantha	Rh6AG352800 Rh6BG359800 Rh6CG367100 Rh6DG353500
rosa_wichuraiana	Rw6G030740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	313
AciI	CCGC	4 cut(s)	120, 145, 299, 313
AcoI	YGGCCR	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	820
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	8 cut(s)	374, 375, 431, 446, 467, 511, 512, 513
AflII	CTTAAG	2 cut(s)	125, 131
AgeI	ACCGGT	1 cut(s)	821
AgsI	TTSAA	5 cut(s)	86, 169, 568, 764, 791
AjnI	CCWGG	3 cut(s)	64, 386, 405
AluBI	AGCT	7 cut(s)	38, 82, 89, 103, 130, 571, 760
AluI	AGCT	7 cut(s)	38, 82, 89, 103, 130, 571, 760
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	2 cut(s)	153, 321
Alw44I	GTGCAC	1 cut(s)	817
Ama87I	CYCGRG	4 cut(s)	374, 413, 467, 494
AoxI	GGCC	9 cut(s)	174, 179, 259, 384, 403, 408, 416, 433, 462
ApaLI	GTGCAC	1 cut(s)	817
ApeKI	GCWGC	1 cut(s)	79
AsiGI	ACCGGT	1 cut(s)	821
AspLEI	GCGC	1 cut(s)	313
AsuC2I	CCSGG	2 cut(s)	178, 338
AsuHPI	GGTGA	1 cut(s)	965
AvaI	CYCGRG	4 cut(s)	374, 413, 467, 494
AvaII	GGWCC	4 cut(s)	6, 68, 483, 773
BaeGI	GKGCMC	1 cut(s)	821
BaeI	ACNNNNGTAYC	2 cut(s)	272, 305
BanII	GRGCYC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	821
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	2 cut(s)	851, 944
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	3 cut(s)	66, 388, 407
BcnI	CCSGG	2 cut(s)	178, 338
BcoDI	GTCTC	2 cut(s)	153, 321
BfaI	CTAG	1 cut(s)	330
BfrI	CTTAAG	2 cut(s)	125, 131
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	5 cut(s)	66, 178, 338, 388, 407
Bme18I	GGWCC	4 cut(s)	6, 68, 483, 773
BmeT110I	CYCGRG	4 cut(s)	374, 413, 467, 494
BmiI	GGNNCC	2 cut(s)	485, 775
BmrFI	CCNGG	5 cut(s)	66, 178, 338, 388, 407
BmsI	GCATC	3 cut(s)	44, 323, 507
BpiI	GAAGAC	1 cut(s)	879
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpmI	CTGGAG	2 cut(s)	468, 573
BpuEI	CTTGAG	2 cut(s)	240, 365
BpuMI	CCSGG	2 cut(s)	178, 338
BsaHI	GRCGYC	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	4 cut(s)	31, 373, 412, 466
BsaWI	WCCGGW	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	8 cut(s)	374, 375, 431, 446, 467, 511, 512, 513
Bse118I	RCCGGY	2 cut(s)	460, 821
Bse1I	ACTGG	1 cut(s)	556
BseBI	CCWGG	3 cut(s)	66, 388, 407
BseDI	CCNNGG	4 cut(s)	31, 373, 412, 466
BseGI	GGATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	8 cut(s)	374, 375, 431, 446, 467, 511, 512, 513
BseMII	CTCAG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	556
BseSI	GKGCMC	1 cut(s)	821
BseXI	GCAGC	1 cut(s)	91
BseYI	CCCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	313
BshFI	GGCC	9 cut(s)	176, 181, 261, 386, 405, 410, 418, 435, 464
BshTI	ACCGGT	1 cut(s)	821
BsiHKAI	GWGCWC	1 cut(s)	821
BsiHKCI	CYCGRG	4 cut(s)	374, 413, 467, 494
BsiSI	CCGG	5 cut(s)	177, 338, 461, 691, 822
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	8 cut(s)	374, 375, 431, 446, 467, 511, 512, 513
BsmAI	GTCTC	2 cut(s)	153, 321
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	9 cut(s)	176, 181, 261, 386, 405, 410, 418, 435, 464
Bso31I	GGTCTC	1 cut(s)	321
BsoBI	CYCGRG	4 cut(s)	374, 413, 467, 494
Bsp1286I	GDGCHC	2 cut(s)	381, 821
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	4 cut(s)	120, 145, 299, 313
BspANI	GGCC	9 cut(s)	176, 181, 261, 386, 405, 410, 418, 435, 464
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	2 cut(s)	485, 775
BspTI	CTTAAG	2 cut(s)	125, 131
BspTNI	GGTCTC	1 cut(s)	321
BsrFI	RCCGGY	2 cut(s)	460, 821
BsrI	ACTGG	1 cut(s)	556
BssAI	RCCGGY	2 cut(s)	460, 821
BssECI	CCNNGG	4 cut(s)	31, 373, 412, 466
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	3 cut(s)	66, 388, 407
Bst4CI	ACNGT	2 cut(s)	585, 622
Bst6I	CTCTTC	2 cut(s)	134, 792
BstACI	GRCGYC	1 cut(s)	455
BstAFI	CTTAAG	2 cut(s)	125, 131
BstDEI	CTNAG	2 cut(s)	74, 155
BstF5I	GGATG	1 cut(s)	522
BstFNI	CGCG	1 cut(s)	313
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	2 cut(s)	153, 321
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	3 cut(s)	66, 388, 407
BstSCI	CCNGG	5 cut(s)	64, 176, 336, 386, 405
BstSLI	GKGCMC	1 cut(s)	821
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	9 cut(s)	176, 181, 261, 386, 405, 410, 418, 435, 464
BtgZI	GCGATG	1 cut(s)	870
BtsCI	GGATG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	618, 844
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	2 cut(s)	460, 821
CseI	GACGC	2 cut(s)	314, 463
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	821
CviAII	CATG	5 cut(s)	106, 205, 636, 796, 881
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	74, 155
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	2 cut(s)	134, 792
EarI	CTCTTC	2 cut(s)	134, 792
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	961
Eco47I	GGWCC	4 cut(s)	6, 68, 483, 773
Eco57I	CTGAAG	1 cut(s)	820
Eco88I	CYCGRG	4 cut(s)	374, 413, 467, 494
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRII	CCWGG	3 cut(s)	64, 386, 405
EcoRV	GATATC	1 cut(s)	961
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	5 cut(s)	109, 208, 639, 799, 884
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	5 cut(s)	105, 204, 635, 795, 880
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	529
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	80
GsaI	CCCAGC	1 cut(s)	515
GsuI	CTGGAG	2 cut(s)	468, 573
HaeIII	GGCC	9 cut(s)	176, 181, 261, 386, 405, 410, 418, 435, 464
HapII	CCGG	5 cut(s)	177, 338, 461, 691, 822
HgaI	GACGC	2 cut(s)	314, 463
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	5 cut(s)	109, 208, 639, 799, 884
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	2 cut(s)	128, 758
HinfI	GANTC	2 cut(s)	784, 828
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	5 cut(s)	177, 338, 461, 691, 822
HphI	GGTGA	1 cut(s)	965
Hpy166II	GTNNAC	3 cut(s)	6, 616, 819
Hpy188I	TCNGA	2 cut(s)	75, 591
Hpy188III	TCNNGA	3 cut(s)	51, 764, 796
Hpy8I	GTNNAC	3 cut(s)	6, 616, 819
Hpy99I	CGWCG	2 cut(s)	457, 968
HpyAV	CCTTC	3 cut(s)	439, 498, 803
HpyCH4III	ACNGT	2 cut(s)	585, 622
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	57, 227, 819
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	2 cut(s)	74, 155
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	5 cut(s)	109, 208, 639, 799, 884
HspAI	GCGC	1 cut(s)	311
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	35, 449
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	3 cut(s)	44, 323, 507
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	381, 821
MluCI	AATT	2 cut(s)	658, 915
MlyI	GAGTC	2 cut(s)	778, 837
MmeI	TCCRAC	1 cut(s)	245
MseI	TTAA	7 cut(s)	126, 132, 276, 351, 615, 657, 729
MslI	CAYNNNNRTG	1 cut(s)	885
MspCI	CTTAAG	2 cut(s)	125, 131
MspI	CCGG	5 cut(s)	177, 338, 461, 691, 822
MspR9I	CCNGG	5 cut(s)	66, 178, 338, 388, 407
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	3 cut(s)	66, 388, 407
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	517
NciI	CCSGG	2 cut(s)	178, 338
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	5 cut(s)	109, 208, 639, 799, 884
NlaIV	GGNNCC	2 cut(s)	485, 775
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	1 cut(s)	386
PctI	GAATGC	1 cut(s)	361
PinAI	ACCGGT	1 cut(s)	821
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	2 cut(s)	778, 836
PpsI	GAGTC	2 cut(s)	778, 836
PpuMI	RGGWCCY	1 cut(s)	773
Psp5II	RGGWCCY	1 cut(s)	773
Psp6I	CCWGG	3 cut(s)	64, 386, 405
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	3 cut(s)	64, 386, 405
PspN4I	GGNNCC	2 cut(s)	485, 775
PspPPI	RGGWCCY	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	885
SaqAI	TTAA	7 cut(s)	126, 132, 276, 351, 615, 657, 729
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	343
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	2 cut(s)	778, 837
ScrFI	CCNGG	5 cut(s)	66, 178, 338, 388, 407
SduI	GDGCHC	2 cut(s)	381, 821
SfaNI	GCATC	3 cut(s)	44, 323, 507
SgrAI	CRCCGGYG	1 cut(s)	821
SinI	GGWCC	4 cut(s)	6, 68, 483, 773
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	4 cut(s)	125, 131, 255, 380
SmoI	CTYRAG	4 cut(s)	125, 131, 255, 380
Sse9I	AATT	2 cut(s)	658, 915
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	4 cut(s)	120, 145, 299, 313
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	5 cut(s)	64, 176, 336, 386, 405
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	585, 622
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	212, 963
TasI	AATT	2 cut(s)	658, 915
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	7 cut(s)	126, 132, 276, 351, 615, 657, 729
Tru9I	TTAA	7 cut(s)	126, 132, 276, 351, 615, 657, 729
TscAI	CASTG	2 cut(s)	625, 844
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	6 cut(s)	624, 812, 897, 924, 939, 957
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	2 cut(s)	625, 844
Vha464I	CTTAAG	2 cut(s)	125, 131
VneI	GTGCAC	1 cut(s)	817
VpaK11BI	GGWCC	4 cut(s)	6, 68, 483, 773
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.