Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008352

Physical Location & Seq

Genomic Coordinates Reverse (-)

22059313 .. 22062363

Gene Structure 3051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G261200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTCGTTTCCGAAATAAAAAGAAGGTTTTTGTGAAACCAGTTTCCAAGAAGCAGCAGGCTACTGTGGACCATGTCACAGGGGATAAAATCCCAAGGAGCTTTGTGTTTTCCAGATATAGGTTGCCTGGTCCTCTAAAACAACTTCAAGCGGATCTGAGGAAGTTGATGCTTCCCTATACTGCTCTTAAGCTTAAGGAGAACAGGCGGAACAAACTTAAAGACTTTTTGAATGTTGCTGGACCTATGGGGGTTACACATTTCCTCATGTTGTCGAAAACTCCAACTGCACCATACCTTAGGGTTGCGAGGACACCTCAAGGCCCAACACTTACATTTAAAATACAGGAGTATTCTTTGGCAACTGATGTTGTTCGATCTCAACTGCGGCCTAGATGTCCTCAAGATCTTTTCAAGAATGCCCCTTTGATCGTTCTTTCTGGTTTTGGGACTGGAGAGCAACATTTGAAGCTCACAACAATTCTATTTCAGAACATCTTTCCATCCATTGATGTTAACACTGTGAAACTCTCTTCATGCCAGAGAATAGTATTGCTTAATTACAACAAAGACACAAAACTGATTGATTTTCGGCATTACTCCATAAGATTACAGCCTGTGGGTGTCTCCCGCAGATTAAGAAGATTTGTTCAGAACCATCAAGTCCCTGATCTAAGGAATCTTCAAGACGTGAGTGATTTTGTCACAAAGGCTGGCTATGGATCAGAAAGTGAAGCAGATGATGAAGCAGCAACAGTCACTTTGGCTAGTGATCTCGGGAGGGTCAATCGGGCTTCTACAAAAAGTGCTGTCAAGCTCCAAGAGATAGGACCCAGGATGACTCTTCAGCTCATGAAGATTGAGGAAGGATTGTGCTCTGGTGGAGTCATCTTCGATGAGTTTGGAAATGGTGATGGTAAGAAAACCAAAGACAACCATGAAGATATGGAAAATGATGAGGATGAACATGATGAGGAAGATGAAGAAAATGACGAAGAAGATGGTGACGATATTGAGGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043933 GO:0044085 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

342

Amino Acids

38.71

Weight (kDa)

7.7

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61770 AT5G61770 AT5G61770
fragaria_vesca	FvH4_2g25700
malus_domestica	MD03G1288000.v1.1 MD11G1310300.v1.1
prunus_persica	Prupe.8G261200_v2.0.a1 Prupe.8G261200_v2.0.a1 Prupe.8G261200_v2.0.a1
pyrus_communis	pycom03g22800 pycom11g27110 pycom16g13360
rosa_chinensis	RchiOBHm_Chr6g0293981
rosa_laevigata	RLG00000011910
rosa_multiflora	Rmu_sc0005126.1_g000007 Rmu_sc0005647.1_g000003
rosa_roxburghii	Rroxscaffold_7G00173770
rosa_rugosa	Rorug06G0239800
rosa_samantha	Rh6AG352800 Rh6BG359800 Rh6CG367100 Rh6DG353500
rosa_wichuraiana	Rw6G030740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	152, 208, 388, 631
AclWI	GGATC	2 cut(s)	162, 730
AcuI	CTGAAG	1 cut(s)	830
AfiI	CCNNNNNNNGG	1 cut(s)	120
AflII	CTTAAG	2 cut(s)	188, 194
AgsI	TTSAA	5 cut(s)	149, 232, 415, 469, 686
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	2 cut(s)	127, 833
AluBI	AGCT	5 cut(s)	102, 193, 472, 817, 850
AluI	AGCT	5 cut(s)	102, 193, 472, 817, 850
Alw21I	GWGCWC	1 cut(s)	878
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	2 cut(s)	162, 730
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	2 cut(s)	322, 389
ApeKI	GCWGC	2 cut(s)	55, 749
AspS9I	GGNCC	5 cut(s)	70, 131, 242, 323, 830
AsuHPI	GGTGA	2 cut(s)	923, 1016
AvaI	CYCGRG	1 cut(s)	776
AvaII	GGWCC	4 cut(s)	70, 131, 242, 830
AxyI	CCTNAGG	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	878
BbvI	GCAGC	2 cut(s)	67, 761
BccI	CCATC	4 cut(s)	511, 666, 908, 995
BciT130I	CCWGG	2 cut(s)	129, 835
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	3 cut(s)	393, 768, 1024
BfrI	CTTAAG	2 cut(s)	188, 194
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	3 cut(s)	56, 389, 750
BlsI	GCNGC	3 cut(s)	57, 390, 751
Bme1390I	CCNGG	2 cut(s)	129, 835
Bme18I	GGWCC	4 cut(s)	70, 131, 242, 830
BmeT110I	CYCGRG	1 cut(s)	776
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	5 cut(s)	70, 131, 242, 323, 830
BmiI	GGNNCC	1 cut(s)	832
BmrFI	CCNGG	2 cut(s)	129, 835
BmsI	GCATC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	303, 387
BsaJI	CCNNGG	2 cut(s)	95, 833
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	41, 457
Bse21I	CCTNAGG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	129, 835
BseDI	CCNNGG	2 cut(s)	95, 833
BseGI	GGATG	3 cut(s)	503, 843, 967
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	41, 457
BseXI	GCAGC	2 cut(s)	67, 761
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	324, 391
BsiHKAI	GWGCWC	1 cut(s)	878
BsiHKCI	CYCGRG	1 cut(s)	776
BslFI	GGGAC	2 cut(s)	463, 650
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	2 cut(s)	463, 650
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	324, 391
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	1 cut(s)	878
Bsp143I	GATC	7 cut(s)	154, 377, 406, 429, 670, 722, 772
BspACI	CCGC	4 cut(s)	152, 208, 388, 631
BspANI	GGCC	2 cut(s)	324, 391
BspCNI	CTCAG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	1 cut(s)	832
BspPI	GGATC	2 cut(s)	162, 730
BspTI	CTTAAG	2 cut(s)	188, 194
BsrI	ACTGG	2 cut(s)	41, 457
BssECI	CCNNGG	2 cut(s)	95, 833
BssMI	GATC	7 cut(s)	154, 377, 406, 429, 670, 722, 772
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	2 cut(s)	129, 835
Bst4CI	ACNGT	3 cut(s)	67, 523, 757
Bst6I	CTCTTC	2 cut(s)	538, 849
BstAFI	CTTAAG	2 cut(s)	188, 194
BstC8I	GCNNGC	2 cut(s)	60, 715
BstDEI	CTNAG	3 cut(s)	158, 299, 674
BstF5I	GGATG	3 cut(s)	503, 843, 967
BstKTI	GATC	7 cut(s)	157, 380, 409, 432, 673, 725, 775
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	7 cut(s)	154, 377, 406, 429, 670, 722, 772
BstNI	CCWGG	2 cut(s)	129, 835
BstSCI	CCNGG	2 cut(s)	127, 833
BstV1I	GCAGC	2 cut(s)	67, 761
BstX2I	RGATCY	2 cut(s)	154, 406
BstYI	RGATCY	2 cut(s)	154, 406
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	324, 391
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	3 cut(s)	503, 843, 967
BtsIMutI	CAGTG	1 cut(s)	519
Cac8I	GCNNGC	2 cut(s)	60, 715
CciI	TCATGA	1 cut(s)	852
Cfr13I	GGNCC	5 cut(s)	70, 131, 242, 323, 830
CviAII	CATG	6 cut(s)	74, 268, 537, 853, 938, 968
DdeI	CTNAG	3 cut(s)	158, 299, 674
DpnI	GATC	7 cut(s)	156, 379, 408, 431, 672, 724, 774
DpnII	GATC	7 cut(s)	154, 377, 406, 429, 670, 722, 772
DraI	TTTAAA	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	538, 849
EarI	CTCTTC	2 cut(s)	538, 849
EciI	GGCGGA	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	4 cut(s)	70, 131, 242, 830
Eco57I	CTGAAG	1 cut(s)	830
Eco81I	CCTNAGG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	776
EcoO109I	RGGNCCY	1 cut(s)	830
EcoRII	CCWGG	2 cut(s)	127, 833
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	6 cut(s)	77, 271, 540, 856, 941, 971
FaqI	GGGAC	2 cut(s)	463, 650
FatI	CATG	6 cut(s)	73, 267, 536, 852, 937, 967
FauI	CCCGC	1 cut(s)	638
Fnu4HI	GCNGC	3 cut(s)	56, 389, 750
FokI	GGATG	3 cut(s)	490, 850, 974
Fsp4HI	GCNGC	3 cut(s)	56, 389, 750
FspBI	CTAG	3 cut(s)	393, 768, 1024
GluI	GCNGC	3 cut(s)	56, 389, 750
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	324, 391
Hin1II	CATG	6 cut(s)	77, 271, 540, 856, 941, 971
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	3 cut(s)	679, 841, 885
HpaI	GTTAAC	1 cut(s)	517
HphI	GGTGA	2 cut(s)	923, 1016
Hpy166II	GTNNAC	2 cut(s)	70, 517
Hpy188I	TCNGA	5 cut(s)	14, 159, 492, 654, 727
Hpy188III	TCNNGA	6 cut(s)	114, 404, 415, 686, 778, 853
Hpy8I	GTNNAC	2 cut(s)	70, 517
HpyAV	CCTTC	2 cut(s)	19, 860
HpyCH4III	ACNGT	3 cut(s)	67, 523, 757
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	158, 299, 674
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	6 cut(s)	77, 271, 540, 856, 941, 971
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	7 cut(s)	154, 377, 406, 429, 670, 722, 772
LmnI	GCTCC	2 cut(s)	99, 822
Lsp1109I	GCAGC	2 cut(s)	67, 761
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	3 cut(s)	393, 768, 1024
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	5 cut(s)	76, 253, 703, 757, 1004
MalI	GATC	7 cut(s)	156, 379, 408, 431, 672, 724, 774
MboI	GATC	7 cut(s)	154, 377, 406, 429, 670, 722, 772
MflI	RGATCY	2 cut(s)	154, 406
MhlI	GDGCHC	1 cut(s)	878
MluCI	AATT	2 cut(s)	480, 559
MlyI	GAGTC	2 cut(s)	835, 894
MmeI	TCCRAC	1 cut(s)	308
MseI	TTAA	7 cut(s)	189, 195, 219, 339, 516, 558, 638
MspCI	CTTAAG	2 cut(s)	188, 194
MspR9I	CCNGG	2 cut(s)	129, 835
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	2 cut(s)	129, 835
NdeII	GATC	7 cut(s)	154, 377, 406, 429, 670, 722, 772
NlaIII	CATG	6 cut(s)	77, 271, 540, 856, 941, 971
NlaIV	GGNNCC	1 cut(s)	832
NmuCI	GTSAC	4 cut(s)	76, 703, 757, 1004
PagI	TCATGA	1 cut(s)	852
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	679
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	57, 390, 751
PleI	GAGTC	2 cut(s)	835, 893
PpsI	GAGTC	2 cut(s)	835, 893
PpuMI	RGGWCCY	1 cut(s)	830
Psp5II	RGGWCCY	1 cut(s)	830
Psp6I	CCWGG	2 cut(s)	127, 833
PspGI	CCWGG	2 cut(s)	127, 833
PspN4I	GGNNCC	1 cut(s)	832
PspPI	GGNCC	5 cut(s)	70, 131, 242, 323, 830
PspPPI	RGGWCCY	1 cut(s)	830
PsuI	RGATCY	2 cut(s)	154, 406
PsyI	GACNNNGTC	1 cut(s)	74
SaqAI	TTAA	7 cut(s)	189, 195, 219, 339, 516, 558, 638
SatI	GCNGC	3 cut(s)	56, 389, 750
Sau3AI	GATC	7 cut(s)	154, 377, 406, 429, 670, 722, 772
Sau96I	GGNCC	5 cut(s)	70, 131, 242, 323, 830
SchI	GAGTC	2 cut(s)	835, 894
ScrFI	CCNGG	2 cut(s)	129, 835
SduI	GDGCHC	1 cut(s)	878
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	4 cut(s)	70, 131, 242, 830
SmlI	CTYRAG	4 cut(s)	188, 194, 318, 402
SmoI	CTYRAG	4 cut(s)	188, 194, 318, 402
Sse9I	AATT	2 cut(s)	480, 559
SsiI	CCGC	4 cut(s)	152, 208, 388, 631
SspMI	CTAG	3 cut(s)	393, 768, 1024
StyD4I	CCNGG	2 cut(s)	127, 833
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	3 cut(s)	67, 523, 757
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	3 cut(s)	275, 376, 894
TasI	AATT	2 cut(s)	480, 559
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	1 cut(s)	679
Tru1I	TTAA	7 cut(s)	189, 195, 219, 339, 516, 558, 638
Tru9I	TTAA	7 cut(s)	189, 195, 219, 339, 516, 558, 638
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	4 cut(s)	76, 703, 757, 1004
TseI	GCWGC	2 cut(s)	55, 749
Tsp45I	GTSAC	4 cut(s)	76, 703, 757, 1004
TspDTI	ATGAA	6 cut(s)	525, 759, 869, 954, 978, 996
TspRI	CASTG	1 cut(s)	526
Tth111I	GACNNNGTC	1 cut(s)	74
Vha464I	CTTAAG	2 cut(s)	188, 194
VpaK11BI	GGWCC	4 cut(s)	70, 131, 242, 830
XspI	CTAG	3 cut(s)	393, 768, 1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.