Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008352

Physical Location & Seq

Genomic Coordinates Reverse (-)

55290340 .. 55295043

Gene Structure 4704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCTCGTTTCAATAATAAGAGGAAGCCATTTGTGAAACCAATTGCGAAGAAGAAGCTGGCCACTGTGGACCATATCACAGGTGATAAGATCCCTAAGAGCTTTGTGTTTTCAAGAGGGAGGTTGCCTGGTCCTCTAAGGCAACTAAAAGCTGATTTAAAACAGTTGATGAATCCCCATACTGCTCTCAATCTTAAGGAGAAGAGACGGAACACTCTCAAAGACTTTCTGAATGTTGCTGGGCCTTATGGGGTTACACATTTCCTCATATTGTCAAAAACTCCAACTGCACCCTACCTTAGAGTTGCCACAACTCCTCAAGGGCCCACTCTTACATTTAAAATAGAAGAGTACTCGCTGGCAGTTGACATCAAACATTCTCAAAAGCATCCTAGATGTCCGAAAGATCTTTTCAAGAATCCACCCATGAGTATTCTTTCTGGTTTTGGAAGTGGTGGTGGCCGCCACAATGATAAAGAACCTCCACAGTTGAAGCTCATATCTGCAGCATTTCGGAATCTCTTTCCATCCATTGATGTTAACACTGTGAAACTGTCTTCCTGCCAGAGAATATTGTTGCTTCATTACAACGAAGACACAAAACTAATTGATTTTCGGCATTACTCTATAAGATTAGAGCCTGTTGGCGTCTCCCGCAGAATAAGCAAATTCGTTCAGAAGCATCAAGTACCTGATTTGAGGAATCTTCAAGACGTGAGTGACTTTGTCACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043933 GO:0044085 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

245

Amino Acids

27.85

Weight (kDa)

10.31

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	46 - 231	4.1e-33	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61770 AT5G61770 AT5G61770
fragaria_vesca	FvH4_2g25700
malus_domestica	MD03G1288000.v1.1 MD11G1310300.v1.1
prunus_persica	Prupe.8G261200_v2.0.a1 Prupe.8G261200_v2.0.a1 Prupe.8G261200_v2.0.a1
pyrus_communis	pycom03g22800 pycom11g27110 pycom16g13360
rosa_chinensis	RchiOBHm_Chr6g0293981
rosa_laevigata	RLG00000011910
rosa_multiflora	Rmu_sc0005126.1_g000007 Rmu_sc0005647.1_g000003
rosa_roxburghii	Rroxscaffold_7G00173770
rosa_rugosa	Rorug06G0239800
rosa_samantha	Rh6AG352800 Rh6BG359800 Rh6CG367100 Rh6DG353500
rosa_wichuraiana	Rw6G030740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	463, 655
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	2 cut(s)	60, 460
AcsI	RAATTY	1 cut(s)	668
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	2 cut(s)	353, 690
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	13, 114, 415, 493, 710
AjiI	CACGTC	1 cut(s)	715
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	4 cut(s)	58, 102, 152, 496
AluI	AGCT	4 cut(s)	58, 102, 152, 496
Alw26I	GTCTC	2 cut(s)	199, 655
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	4 cut(s)	60, 242, 323, 460
ApaI	GGGCCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	668
AspS9I	GGNCC	5 cut(s)	70, 131, 242, 323, 324
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	70, 131
BaeGI	GKGCMC	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	549, 600
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	199, 655
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	1 cut(s)	504
BfrI	CTTAAG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	2 cut(s)	463, 507
BlsI	GCNGC	2 cut(s)	464, 508
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	2 cut(s)	70, 131
BmgBI	CACGTC	1 cut(s)	715
BmgT120I	GGNCC	5 cut(s)	70, 131, 242, 323, 324
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	397, 691
BpiI	GAAGAC	2 cut(s)	549, 600
BpuEI	CTTGAG	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	388, 527
BseRI	GAGGAG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	518
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	62, 244, 325, 462
BsmAI	GTCTC	2 cut(s)	199, 655
BsmBI	CGTCTC	2 cut(s)	199, 655
BsnI	GGCC	4 cut(s)	62, 244, 325, 462
Bsp120I	GGGCCC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	90, 406
BspACI	CCGC	2 cut(s)	463, 655
BspANI	GGCC	4 cut(s)	62, 244, 325, 462
BspLI	GGNNCC	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	85
BspTI	CTTAAG	1 cut(s)	194
BssMI	GATC	2 cut(s)	90, 406
BssNI	GRCGYC	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	5 cut(s)	67, 165, 489, 547, 555
Bst6I	CTCTTC	2 cut(s)	197, 342
BstACI	GRCGYC	1 cut(s)	648
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	60, 360
BstDEI	CTNAG	3 cut(s)	96, 137, 299
BstF5I	GGATG	2 cut(s)	388, 527
BstKTI	GATC	2 cut(s)	93, 409
BstMAI	GTCTC	2 cut(s)	199, 655
BstMBI	GATC	2 cut(s)	90, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	654, 663
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	2 cut(s)	549, 600
BstX2I	RGATCY	2 cut(s)	90, 406
BstYI	RGATCY	2 cut(s)	90, 406
BsuRI	GGCC	4 cut(s)	62, 244, 325, 462
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	388, 527
BtsIMutI	CAGTG	2 cut(s)	63, 543
Cac8I	GCNNGC	2 cut(s)	60, 360
Cfr13I	GGNCC	5 cut(s)	70, 131, 242, 323, 324
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	2 cut(s)	352, 689
CviAII	CATG	1 cut(s)	427
CviQI	GTAC	2 cut(s)	352, 689
DdeI	CTNAG	3 cut(s)	96, 137, 299
DpnI	GATC	2 cut(s)	92, 408
DpnII	GATC	2 cut(s)	90, 406
DraI	TTTAAA	2 cut(s)	159, 340
EaeI	YGGCCR	2 cut(s)	60, 460
Eam1104I	CTCTTC	2 cut(s)	197, 342
EarI	CTCTTC	2 cut(s)	197, 342
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	70, 131
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	327
Esp3I	CGTCTC	2 cut(s)	199, 655
FaeI	CATG	1 cut(s)	430
FaiI	YATR	7 cut(s)	75, 180, 249, 269, 428, 500, 629
FatI	CATG	1 cut(s)	426
FauI	CCCGC	1 cut(s)	662
Fnu4HI	GCNGC	2 cut(s)	463, 507
FokI	GGATG	2 cut(s)	375, 514
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	463, 507
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	2 cut(s)	463, 507
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	62, 244, 325, 462
HgaI	GACGC	1 cut(s)	637
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	1 cut(s)	430
HincII	GTYRAC	2 cut(s)	367, 541
HindII	GTYRAC	2 cut(s)	367, 541
HinfI	GANTC	4 cut(s)	172, 418, 517, 703
HpaI	GTTAAC	1 cut(s)	541
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	3 cut(s)	70, 367, 541
Hpy188I	TCNGA	4 cut(s)	231, 402, 516, 678
Hpy188III	TCNNGA	3 cut(s)	114, 415, 710
Hpy8I	GTNNAC	3 cut(s)	70, 367, 541
HpyCH4III	ACNGT	5 cut(s)	67, 165, 489, 547, 555
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	2 cut(s)	290, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	654, 663
HpyF3I	CTNAG	3 cut(s)	96, 137, 299
HpySE526I	ACGT	1 cut(s)	714
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	1 cut(s)	430
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	90, 406
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	2 cut(s)	397, 691
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	3 cut(s)	253, 719, 727
MalI	GATC	2 cut(s)	92, 408
MboI	GATC	2 cut(s)	90, 406
MboII	GAAGA	7 cut(s)	61, 64, 214, 359, 549, 605, 698
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	2 cut(s)	90, 406
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	3 cut(s)	42, 606, 668
MluNI	TGGCCA	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	8 cut(s)	15, 110, 114, 144, 275, 327, 492, 693
Mox20I	TGGCCA	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	4 cut(s)	158, 195, 339, 540
Msp20I	TGGCCA	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	654, 663
NdeII	GATC	2 cut(s)	90, 406
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	2 cut(s)	719, 727
PfeI	GAWTC	4 cut(s)	172, 418, 517, 703
PflFI	GACNNNGTC	1 cut(s)	725
PkrI	GCNGC	2 cut(s)	464, 508
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	325
PspOMI	GGGCCC	1 cut(s)	323
PspPI	GGNCC	5 cut(s)	70, 131, 242, 323, 324
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	90, 406
PsyI	GACNNNGTC	1 cut(s)	725
RsaI	GTAC	2 cut(s)	353, 690
RsaNI	GTAC	2 cut(s)	352, 689
SaqAI	TTAA	4 cut(s)	158, 195, 339, 540
SatI	GCNGC	2 cut(s)	463, 507
Sau3AI	GATC	2 cut(s)	90, 406
Sau96I	GGNCC	5 cut(s)	70, 131, 242, 323, 324
ScaI	AGTACT	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	397, 691
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	2 cut(s)	70, 131
SmlI	CTYRAG	2 cut(s)	194, 318
SmoI	CTYRAG	2 cut(s)	194, 318
Sse9I	AATT	3 cut(s)	42, 606, 668
SsiI	CCGC	2 cut(s)	463, 655
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	5 cut(s)	67, 165, 489, 547, 555
TaiI	ACGT	1 cut(s)	717
TasI	AATT	3 cut(s)	42, 606, 668
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	4 cut(s)	172, 418, 517, 703
Tru1I	TTAA	4 cut(s)	158, 195, 339, 540
Tru9I	TTAA	4 cut(s)	158, 195, 339, 540
TscAI	CASTG	2 cut(s)	70, 550
TseFI	GTSAC	2 cut(s)	719, 727
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	2 cut(s)	719, 727
TspDTI	ATGAA	2 cut(s)	185, 572
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	2 cut(s)	70, 550
Tth111I	GACNNNGTC	1 cut(s)	725
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	70, 131
XapI	RAATTY	1 cut(s)	668
XspI	CTAG	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.