Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016690

Physical Location & Seq

Genomic Coordinates Forward (+)

24929207 .. 24929778

Gene Structure 572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62065.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACGAGATCATTCTCTCCGGTGGTGTCTCTCTTCTTATTACTACTGCAAACGATATGTTCAGCCACTGTGGAAAACGCAGCGGATTGTGCGGCGGTGGGAACGCTGATATCGTCGTGCACAGAGTTTGTGAACTACGGGTATCCGGATCCGATACCAGGGTCGAGTTGCTGCGACGCGATGACTGTGATCGGAACTTACTCTGATTCGTCGGAGAAGAGAAAGTGGCTGTGTAACTGCTTCATGGATCTCATCAATGTCTATAACTCTAACGCCACCGCCATTTCTACTTTGTCTGGCTTCTGCGGCGTCGTTTTGGGCTTCACCATCGACCCTAACACCGACTGCAACTTCATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

12.85

Weight (kDa)

4.05

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62065
fragaria_vesca	FvH4_7g29100
malus_domestica	MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica	Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376841
rosa_laevigata	RLG00000026565
rosa_multiflora	Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281680
rosa_rugosa	Rorug01G0399000
rosa_samantha	Rh1AG416200
rosa_wichuraiana	Rw1G036510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	5 cut(s)	83, 92, 95, 279, 306
AclWI	GGATC	3 cut(s)	143, 156, 255
AcyI	GRCGYC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	118
AlwI	GGATC	3 cut(s)	143, 156, 255
AlwNI	CAGNNNCTG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	145
ApaLI	GTGCAC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	80, 171
AsuHPI	GGTGA	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	122
BaeI	ACNNNNGTAYC	2 cut(s)	146, 179
BamHI	GGATCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	92, 158
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	153
BisI	GCNGC	4 cut(s)	81, 93, 172, 307
BlsI	GCNGC	4 cut(s)	82, 94, 173, 308
Bme1390I	CCNGG	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	158
BsaWI	WCCGGW	2 cut(s)	19, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	92, 158
Bsh1236I	CGCG	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	20, 146
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	8, 148, 189, 247
BspACI	CCGC	5 cut(s)	83, 92, 95, 279, 306
BspEI	TCCGGA	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	3 cut(s)	143, 156, 255
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	4 cut(s)	8, 148, 189, 247
BssNI	GRCGYC	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	70, 187
Bst6I	CTCTTC	2 cut(s)	38, 212
BstACI	GRCGYC	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	4 cut(s)	11, 151, 192, 250
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	4 cut(s)	8, 148, 189, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 306
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	92, 158
BstX2I	RGATCY	2 cut(s)	148, 247
BstYI	RGATCY	2 cut(s)	148, 247
BsuI	GTATCC	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	68
CseI	GACGC	2 cut(s)	185, 298
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	4 cut(s)	65, 229, 300, 321
CviKI_1	RGCY	4 cut(s)	65, 229, 300, 321
DpnI	GATC	4 cut(s)	10, 150, 191, 249
DpnII	GATC	4 cut(s)	8, 148, 189, 247
Eam1104I	CTCTTC	2 cut(s)	38, 212
EarI	CTCTTC	2 cut(s)	38, 212
Eco32I	GATATC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	111
FaeI	CATG	1 cut(s)	247
FaiI	YATR	3 cut(s)	58, 245, 264
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	81, 93, 172, 307
Fsp4HI	GCNGC	4 cut(s)	81, 93, 172, 307
GluI	GCNGC	4 cut(s)	81, 93, 172, 307
HapII	CCGG	2 cut(s)	20, 146
HgaI	GACGC	2 cut(s)	185, 298
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	20, 146
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	120, 133
Hpy188I	TCNGA	4 cut(s)	153, 194, 205, 214
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	120, 133
Hpy99I	CGWCG	4 cut(s)	118, 179, 214, 314
HpyCH4III	ACNGT	2 cut(s)	70, 187
HpyCH4V	TGCA	3 cut(s)	49, 120, 348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 306
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	247
Kpn2I	TCCGGA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	8, 148, 189, 247
LpnPI	CCDG	5 cut(s)	33, 144, 159, 171, 282
Lsp1109I	GCAGC	2 cut(s)	92, 158
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	4 cut(s)	10, 150, 191, 249
MboI	GATC	4 cut(s)	8, 148, 189, 247
MboII	GAAGA	2 cut(s)	25, 229
MflI	RGATCY	2 cut(s)	148, 247
MhlI	GDGCHC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	192
MroI	TCCGGA	1 cut(s)	145
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	2 cut(s)	20, 146
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	89, 306
NdeII	GATC	4 cut(s)	8, 148, 189, 247
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	82, 94, 173, 308
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	148, 247
SatI	GCNGC	4 cut(s)	81, 93, 172, 307
Sau3AI	GATC	4 cut(s)	8, 148, 189, 247
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	122
SsiI	CCGC	5 cut(s)	83, 92, 95, 279, 306
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	70, 187
TaqI	TCGA	2 cut(s)	164, 330
TauI	GCSGC	2 cut(s)	95, 309
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	80, 171
TspDTI	ATGAA	2 cut(s)	232, 343
TspRI	CASTG	1 cut(s)	73
VneI	GTGCAC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.