Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016690

Physical Location & Seq

Genomic Coordinates Reverse (-)

28484749 .. 28485846

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G291200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGAAGCCGGAAGTTGATGATCGGAGTAACAATAATGGCGTTGTTATCAACGGCGATATTGGTGTCTAGCACGATAGAATGCTCTGCCGTGACGGCACTGGTCTCCACTTGCTACACCTTCATCACGTATGGCTCACCAGACCCCTTCCCAGGGTCTCCATGTTGCAATGCCATGGCCAATCTCAAGGTTATTGCTGACACAATTGAGAATCGGAGATTTGCGTGTAGATGCTTATTGGGCCTCATTTCCACATACAACCCAAATGCTTATGCGATTGCTACTTTGCCTGACTTTTGTCAAGTTTCTTTGGGCTTCAACATCGATCCTAACACTGATTGCAATTTCTGCAGGGCAGAGGAAGGGAGGTTCGAGTTTTGGGTTGAAGAAAATCTGAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.64

Weight (kDa)

4.61

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62065
fragaria_vesca	FvH4_7g29100
malus_domestica	MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica	Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376841
rosa_laevigata	RLG00000026565
rosa_multiflora	Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281680
rosa_rugosa	Rorug01G0399000
rosa_samantha	Rh1AG416200
rosa_wichuraiana	Rw1G036510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	152, 153
AgsI	TTSAA	2 cut(s)	319, 386
AjnI	CCWGG	1 cut(s)	151
AloI	GAACNNNNNNTCC	2 cut(s)	353, 385
Alw26I	GTCTC	2 cut(s)	109, 162
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	177, 241
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	179
BceAI	ACGGC	3 cut(s)	69, 74, 111
BciT130I	CCWGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	109, 162
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	349
BglI	GCCNNNNNGGC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	221
BoxI	GACNNNNGTC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	109, 162
BsaJI	CCNNGG	3 cut(s)	151, 152, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 153
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	3 cut(s)	151, 152, 174
BseLI	CCNNNNNNNGG	2 cut(s)	152, 153
BseMI	GCAATG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	179, 243
BshVI	ATCGAT	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	152, 153
BsmAI	GTCTC	2 cut(s)	109, 162
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	179, 243
Bso31I	GGTCTC	2 cut(s)	109, 162
Bsp143I	GATC	2 cut(s)	21, 325
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	2 cut(s)	179, 243
BspDI	ATCGAT	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	353
BspPI	GGATC	1 cut(s)	320
BspTNI	GGTCTC	2 cut(s)	109, 162
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	151, 152, 174
BssMI	GATC	2 cut(s)	21, 325
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	24, 328
BstMAI	GTCTC	2 cut(s)	109, 162
BstMBI	GATC	2 cut(s)	21, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 240, 348
BstNI	CCWGG	1 cut(s)	153
BstPAI	GACNNNNGTC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	179, 243
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	98, 333
Cfr13I	GGNCC	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	324
CviAII	CATG	2 cut(s)	162, 175
CviJI	RGCY	5 cut(s)	9, 135, 179, 243, 315
CviKI_1	RGCY	5 cut(s)	9, 135, 179, 243, 315
DpnI	GATC	2 cut(s)	23, 327
DpnII	GATC	2 cut(s)	21, 325
EaeI	YGGCCR	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	2 cut(s)	109, 162
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	165, 178
FaiI	YATR	5 cut(s)	132, 163, 176, 256, 273
FatI	CATG	2 cut(s)	161, 174
FspBI	CTAG	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	179, 243
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	2 cut(s)	165, 178
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	26, 216, 396
HpyAV	CCTTC	3 cut(s)	130, 157, 356
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	168, 342, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 240, 348
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	165, 178
Kzo9I	GATC	2 cut(s)	21, 325
LpnPI	CCDG	7 cut(s)	23, 86, 138, 153, 165, 303, 337
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	28, 91
MalI	GATC	2 cut(s)	23, 327
MboI	GATC	2 cut(s)	21, 325
MboII	GAAGA	1 cut(s)	398
MfeI	CAATTG	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	3 cut(s)	204, 343, 400
MluNI	TGGCCA	1 cut(s)	179
MnlI	CCTC	3 cut(s)	254, 352, 360
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	95, 240, 348
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	21, 325
NlaIII	CATG	2 cut(s)	165, 178
NmuCI	GTSAC	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	152
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	129
PshAI	GACNNNNGTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	353
Sau3AI	GATC	2 cut(s)	21, 325
Sau96I	GGNCC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	4 cut(s)	122, 131, 192, 371
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	204, 343, 400
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	324, 372
TasI	AATT	3 cut(s)	204, 343, 400
TfiI	GAWTC	1 cut(s)	211
TscAI	CASTG	2 cut(s)	105, 340
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	112
TspRI	CASTG	2 cut(s)	105, 340
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.