Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016690

Physical Location & Seq

Genomic Coordinates Reverse (-)

64831333 .. 64831769

Gene Structure 437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG416200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTGCTATCGAGTGTGACATTGGTGTCTAGCCTTACAGATATAGAGTGCTCCAGCGTGACGGCCCTTGTATCCGCTTGCTACACCTTCATAACGTATGGCTCACCGGACCCTTCTCCGGGGTCTCCATGCTGTCATTCCATGGTAAGTCTCAAAATGGTTTCCGATCCCACTGTTGAAAATCGGAGATTTACTTGTAGATGCTTGATGAGCCTCATTTCCACTTACAACCCTAATGGCTATGCGCTTGCTACTTTGCCCGACCTTTGTGAAGTCTCTTTGGGTTTTAACATTGATCCTAACACTGATTGCAACTTGATACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.58

Weight (kDa)

4.31

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62065
fragaria_vesca	FvH4_7g29100
malus_domestica	MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica	Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376841
rosa_laevigata	RLG00000026565
rosa_multiflora	Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281680
rosa_rugosa	Rorug01G0399000
rosa_samantha	Rh1AG416200
rosa_wichuraiana	Rw1G036510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	161, 290
AfiI	CCNNNNNNNGG	2 cut(s)	118, 119
AgsI	TTSAA	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	3 cut(s)	129, 155, 280
AlwI	GGATC	2 cut(s)	161, 290
AoxI	GGCC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	64, 109
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	129, 155, 280
BfaI	CTAG	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	64, 109
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	119, 141
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 119
BseDI	CCNNGG	2 cut(s)	119, 141
BseLI	CCNNNNNNNGG	2 cut(s)	118, 119
BshFI	GGCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	107, 119
BslI	CCNNNNNNNGG	2 cut(s)	118, 119
BsmAI	GTCTC	3 cut(s)	129, 155, 280
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	166, 295
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	2 cut(s)	161, 290
BspTNI	GGTCTC	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	119, 141
BssMI	GATC	2 cut(s)	166, 295
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	79, 249
BstDSI	CCRYGG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	2 cut(s)	169, 298
BstMAI	GTCTC	3 cut(s)	129, 155, 280
BstMBI	GATC	2 cut(s)	166, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	171, 303
Cac8I	GCNNGC	2 cut(s)	79, 249
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	64, 109
CviAII	CATG	3 cut(s)	129, 142, 324
CviJI	RGCY	5 cut(s)	33, 65, 102, 213, 240
CviKI_1	RGCY	5 cut(s)	33, 65, 102, 213, 240
DpnI	GATC	2 cut(s)	168, 297
DpnII	GATC	2 cut(s)	166, 295
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	132, 145, 327
FaiI	YATR	7 cut(s)	44, 92, 99, 130, 143, 243, 325
FatI	CATG	3 cut(s)	128, 141, 323
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	107, 119
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	132, 145, 327
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	107, 119
HphI	GGTGA	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	166, 186
HpyAV	CCTTC	2 cut(s)	97, 123
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	132, 145, 327
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	166, 295
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	3 cut(s)	67, 120, 132
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	16, 58
MalI	GATC	2 cut(s)	168, 297
MboI	GATC	2 cut(s)	166, 295
MhlI	GDGCHC	1 cut(s)	53
MnlI	CCTC	1 cut(s)	224
MseI	TTAA	1 cut(s)	288
MspI	CCGG	2 cut(s)	107, 119
MspR9I	CCNGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	120
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	166, 295
NlaIII	CATG	3 cut(s)	132, 145, 327
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	16, 58
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	2 cut(s)	64, 109
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	166, 295
Sau96I	GGNCC	2 cut(s)	64, 109
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	3 cut(s)	89, 98, 267
SfaNI	GCATC	1 cut(s)	191
SinI	GGWCC	1 cut(s)	109
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	178, 310
TseFI	GTSAC	2 cut(s)	16, 58
Tsp45I	GTSAC	2 cut(s)	16, 58
TspDTI	ATGAA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	178, 310
VpaK11BI	GGWCC	1 cut(s)	109
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.