Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0016690

Physical Location & Seq

Genomic Coordinates Forward (+)

3872425 .. 3872781

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026565

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGGAGCCAAATATTGATGATAGGAGTATTGGTAATGTTGCTATCGAGTGTGACATTGGTGTCTAGCCTTACAGATATAGAGTGCTCCAGCGTGACGGCCCTTGTATCCGCTTGCTACACCTTCATAACGTATGGCTCACCGGACCCTTCTCCGGGGTCTCCATGCTGTCATTCCATGGTAAGTCTCAAAATGGTTTCCGATCCCACTGTTGAAAATCGGAGATTTACTTGTAGATGCTTGATGAGCCTCATTTCCACTTACAACCCTAATGGCTATGCGCTTGCTACTTTGCCCGACCTCTGTGAAGTCTCTTTGGGTTTTAACATTGATCCTAACACTGATTGCAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.61

Weight (kDa)

4.31

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62065
fragaria_vesca	FvH4_7g29100
malus_domestica	MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica	Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376841
rosa_laevigata	RLG00000026565
rosa_multiflora	Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281680
rosa_rugosa	Rorug01G0399000
rosa_samantha	Rh1AG416200
rosa_wichuraiana	Rw1G036510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	2 cut(s)	197, 326
AfiI	CCNNNNNNNGG	2 cut(s)	154, 155
AgsI	TTSAA	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	3 cut(s)	165, 191, 316
AlwI	GGATC	2 cut(s)	197, 326
AoxI	GGCC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	100, 145
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	114
BciVI	GTATCC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	3 cut(s)	165, 191, 316
BfaI	CTAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	100, 145
BmiI	GGNNCC	2 cut(s)	8, 147
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	155, 177
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 155
BseDI	CCNNGG	2 cut(s)	155, 177
BseLI	CCNNNNNNNGG	2 cut(s)	154, 155
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	143, 155
BslI	CCNNNNNNNGG	2 cut(s)	154, 155
BsmAI	GTCTC	3 cut(s)	165, 191, 316
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	202, 331
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	8, 147
BspPI	GGATC	2 cut(s)	197, 326
BspTNI	GGTCTC	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	155, 177
BssMI	GATC	2 cut(s)	202, 331
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	115, 285
BstDSI	CCRYGG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	205, 334
BstMAI	GTCTC	3 cut(s)	165, 191, 316
BstMBI	GATC	2 cut(s)	202, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	154
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	207, 339
Cac8I	GCNNGC	2 cut(s)	115, 285
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	100, 145
CviAII	CATG	2 cut(s)	165, 178
CviJI	RGCY	6 cut(s)	9, 69, 101, 138, 249, 276
CviKI_1	RGCY	6 cut(s)	9, 69, 101, 138, 249, 276
DpnI	GATC	2 cut(s)	204, 333
DpnII	GATC	2 cut(s)	202, 331
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	168, 181
FaiI	YATR	6 cut(s)	80, 128, 135, 166, 179, 279
FatI	CATG	2 cut(s)	164, 177
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	143, 155
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	168, 181
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HpaII	CCGG	2 cut(s)	143, 155
HphI	GGTGA	1 cut(s)	132
Hpy188I	TCNGA	2 cut(s)	202, 222
HpyAV	CCTTC	2 cut(s)	133, 159
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	168, 181
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	202, 331
LmnI	GCTCC	2 cut(s)	6, 92
LpnPI	CCDG	3 cut(s)	103, 156, 168
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	52, 94
MalI	GATC	2 cut(s)	204, 333
MboI	GATC	2 cut(s)	202, 331
MhlI	GDGCHC	1 cut(s)	89
MnlI	CCTC	2 cut(s)	260, 311
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	143, 155
MspR9I	CCNGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	202, 331
NlaIII	CATG	2 cut(s)	168, 181
NlaIV	GGNNCC	2 cut(s)	8, 147
NmuCI	GTSAC	2 cut(s)	52, 94
PspN4I	GGNNCC	2 cut(s)	8, 147
PspPI	GGNCC	2 cut(s)	100, 145
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	202, 331
Sau96I	GGNCC	2 cut(s)	100, 145
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	3 cut(s)	125, 134, 303
SfaNI	GCATC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	145
SsiI	CCGC	1 cut(s)	111
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	214, 346
TseFI	GTSAC	2 cut(s)	52, 94
Tsp45I	GTSAC	2 cut(s)	52, 94
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	214, 346
VpaK11BI	GGWCC	1 cut(s)	145
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.