Rorug01G0399000

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016690
Physical Location & Seq
Forward (+)
50761223 .. 50763282
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0399000.1

Sequence Viewer

Length: 447 bp
ATGCTCGAAGCACATTTTTTGTCAAGTGGTTTTGTTGTGATGCTTTTTCATTATGATGGTAACGTTGAGGAGTGGATGCAATTTCAATGGAATGATCTTGTCATTTATGTGTCTGCAGTCAATCAAACAAAATGGTGGTTCGCAAAGCGTTTCTTACATCCTGATATAGTTGATCAATATAGTCGCATTCTTCTACGGGATGAGGACCTTGGAGTTGACAATTTCAATCCTCAACGGTATGTGTCCATTGTTCGAAAGGAAGGGCTTGAAATATCACAACCGGCACTTGATTTTTTCAAGACAGAGGTGAACTACATGGAGAAACTTTCAAAAGATGAGGGGATTCAGAAGAAACTCAACAATGATATTTTGCAATATAAAGCTCATATAATCAAGATATTTGTGGAACATAGGCACAATTGGATCTCTGCAGATTTAGAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.77

Weight (kDa)

5.46

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 5 - 113 7.3e-49 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016690)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62065
fragaria_vesca FvH4_7g29100
malus_domestica MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0376841
rosa_laevigata RLG00000026565
rosa_multiflora Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii Rroxscaffold_4G00281680
rosa_rugosa Rorug01G0399000
rosa_samantha Rh1AG416200
rosa_wichuraiana Rw1G036510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 63
AclWI GGATC 1 cut(s) 431
AgsI TTSAA 5 cut(s) 86, 226, 269, 298, 330
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
AlwI GGATC 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 319
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 205
BccI CCATC 1 cut(s) 50
BclI TGATCA 1 cut(s) 172
BfmI CTRYAG 2 cut(s) 114, 429
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmsI GCATC 2 cut(s) 30, 66
Bpu14I TTCGAA 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 3 cut(s) 81, 157, 205
BseRI GAGGAG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 281
BsmI GAATGC 1 cut(s) 186
Bsp119I TTCGAA 1 cut(s) 253
Bsp143I GATC 3 cut(s) 94, 172, 423
BspMAI CTGCAG 2 cut(s) 118, 433
BspPI GGATC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 3 cut(s) 94, 172, 423
BssT1I CCWWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 253
BstF5I GGATG 3 cut(s) 81, 157, 205
BstKTI GATC 3 cut(s) 97, 175, 426
BstMBI GATC 3 cut(s) 94, 172, 423
BstSFI CTRYAG 2 cut(s) 114, 429
BstX2I RGATCY 1 cut(s) 423
BstYI RGATCY 1 cut(s) 423
BtsCI GGATG 3 cut(s) 81, 157, 205
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 205
CviAII CATG 1 cut(s) 316
CviJI RGCY 2 cut(s) 265, 383
CviKI_1 RGCY 2 cut(s) 265, 383
DpnI GATC 3 cut(s) 96, 174, 425
DpnII GATC 3 cut(s) 94, 172, 423
Eco130I CCWWGG 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 1 cut(s) 319
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 1 cut(s) 315
FbaI TGATCA 1 cut(s) 172
FokI GGATG 3 cut(s) 88, 144, 212
HapII CCGG 1 cut(s) 281
Hin1II CATG 1 cut(s) 319
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 217, 310
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 3 cut(s) 161, 298, 394
Hpy8I GTNNAC 2 cut(s) 217, 310
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 4 cut(s) 79, 116, 373, 431
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 3 cut(s) 94, 172, 423
LpnPI CCDG 2 cut(s) 174, 294
LweI GCATC 2 cut(s) 30, 66
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 59
MalI GATC 3 cut(s) 96, 174, 425
MboI GATC 3 cut(s) 94, 172, 423
MboII GAAGA 2 cut(s) 182, 361
MfeI CAATTG 1 cut(s) 418
MflI RGATCY 1 cut(s) 423
MluCI AATT 3 cut(s) 80, 220, 418
MnlI CCTC 5 cut(s) 61, 196, 240, 298, 331
MslI CAYNNNNRTG 2 cut(s) 54, 107
MspI CCGG 1 cut(s) 281
MunI CAATTG 1 cut(s) 418
Mva1269I GAATGC 1 cut(s) 186
NdeII GATC 3 cut(s) 94, 172, 423
NlaIII CATG 1 cut(s) 319
NspV TTCGAA 1 cut(s) 253
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 205
Psp1406I AACGTT 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 205
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PstI CTGCAG 2 cut(s) 118, 433
PsuI RGATCY 1 cut(s) 423
RseI CAYNNNNRTG 2 cut(s) 54, 107
Sau3AI GATC 3 cut(s) 94, 172, 423
Sau96I GGNCC 1 cut(s) 205
SetI ASST 4 cut(s) 66, 210, 309, 385
SfaNI GCATC 2 cut(s) 30, 66
SfcI CTRYAG 2 cut(s) 114, 429
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 54, 107
Sse9I AATT 3 cut(s) 80, 220, 418
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 237
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 6, 253
TasI AATT 3 cut(s) 80, 220, 418
TfiI GAWTC 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.