Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8323115.1

Orthogroup ID

OG0016690

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 941

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8323115.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 377 bp

atgtcttcacttttcatccagtcaaatatctctgttggtgcttccggtgcactttttggattgctgggagccatgctttctgaacttatcactaactggacgatatatgctagtaagtttggagcgcttttcaccctcctgatcatcatagcaatcaatttggcagtgggaattctcccacatgtggataactttgctcacattggaggattcctttcgggtttctttctggggttcgtatttcttatccgccctcagttcggatgggttaaccaaagatatgctcctccagagtacagatcatctgaagttaaatctaagttcaagacctatcagtgcattttttggatcctttcgctggttattttaatcgttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

126

Amino Acids

13.93

Weight (kDa)

9.3

Isoelectric Point (pI)

34.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62065
fragaria_vesca	FvH4_7g29100
malus_domestica	MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica	Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376841
rosa_laevigata	RLG00000026565
rosa_multiflora	Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281680
rosa_rugosa	Rorug01G0399000
rosa_samantha	Rh1AG416200
rosa_wichuraiana	Rw1G036510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	343, 356
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	296
AfeI	AGCGCT	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	184, 260, 358
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	52
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	343, 356
Aor51HI	AGCGCT	1 cut(s)	126
ApaLI	GTGCAC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	52
BccI	CCATC	1 cut(s)	258
BclI	TGATCA	1 cut(s)	141
BfaI	CTAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	70, 350
BpmI	CTGGAG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 260, 358
Bse1I	ACTGG	2 cut(s)	19, 101
BseGI	GGATG	2 cut(s)	15, 269
BseLI	CCNNNNNNNGG	3 cut(s)	184, 260, 358
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	19, 101
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	184, 260, 358
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	141, 299, 348
BspACI	CCGC	1 cut(s)	250
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	70, 350
BspPI	GGATC	2 cut(s)	343, 356
BsrI	ACTGG	2 cut(s)	19, 101
BssMI	GATC	3 cut(s)	141, 299, 348
BstDEI	CTNAG	2 cut(s)	255, 318
BstF5I	GGATG	2 cut(s)	15, 269
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	3 cut(s)	144, 302, 351
BstMBI	GATC	3 cut(s)	141, 299, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	15, 269
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 341
CfoI	GCGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	2 cut(s)	73, 182
CviJI	RGCY	1 cut(s)	71
CviKI_1	RGCY	1 cut(s)	71
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	255, 318
DpnI	GATC	3 cut(s)	143, 301, 350
DpnII	GATC	3 cut(s)	141, 299, 348
EciI	GGCGGA	1 cut(s)	239
Eco47III	AGCGCT	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	171
FaeI	CATG	2 cut(s)	76, 185
FaiI	YATR	6 cut(s)	74, 106, 108, 149, 183, 282
FatI	CATG	2 cut(s)	72, 181
FbaI	TGATCA	1 cut(s)	141
FokI	GGATG	2 cut(s)	2, 276
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	68
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	128
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	76, 185
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	210
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	50, 271
Hpy188I	TCNGA	3 cut(s)	82, 263, 307
Hpy188III	TCNNGA	3 cut(s)	139, 290, 325
Hpy8I	GTNNAC	2 cut(s)	50, 271
HpyCH4V	TGCA	2 cut(s)	50, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	255, 318
Hsp92II	CATG	2 cut(s)	76, 185
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	141
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	141, 299, 348
LmnI	GCTCC	3 cut(s)	68, 122, 289
LpnPI	CCDG	8 cut(s)	32, 50, 58, 82, 152, 215, 303, 344
MaeI	CTAG	1 cut(s)	111
MalI	GATC	3 cut(s)	143, 301, 350
MboI	GATC	3 cut(s)	141, 299, 348
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	2 cut(s)	157, 171
MnlI	CCTC	4 cut(s)	146, 200, 264, 297
MseI	TTAA	3 cut(s)	270, 312, 368
MspI	CCGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	3 cut(s)	141, 299, 348
NlaIII	CATG	2 cut(s)	76, 185
NlaIV	GGNNCC	2 cut(s)	70, 350
NspI	RCATGY	1 cut(s)	185
PciI	ACATGT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	210
PscI	ACATGT	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	70, 350
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	3 cut(s)	270, 312, 368
Sau3AI	GATC	3 cut(s)	141, 299, 348
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	1 cut(s)	332
Sse9I	AATT	2 cut(s)	157, 171
SsiI	CCGC	1 cut(s)	250
SspMI	CTAG	1 cut(s)	111
TasI	AATT	2 cut(s)	157, 171
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	3 cut(s)	270, 312, 368
Tru9I	TTAA	3 cut(s)	270, 312, 368
TscAI	CASTG	2 cut(s)	171, 341
TspDTI	ATGAA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	171, 341
VneI	GTGCAC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	185
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.