Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016690

Physical Location & Seq

Genomic Coordinates Reverse (-)

33392417 .. 33392887

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1265400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTTTCAGAACTAATTACAAATTGGACCATCTACACCAACAAGGTTGCAGCCCTTCTCACACTTTTAATCATTGTTGTCATAAACCTTGCCGTTGGAATTTTACCACACGTAGATAACTTTGCTCACATTGGCGGTTTTCTTACGGGTTTCCTCATCGGCTTTATCTTGATGGCCCGCCCTCGCTTTGGGTGGTTGGAGAACCCGAATCTTCCTGCCGGAGTCAGTTATGTAAATTTAACTTTTTTTTTTTTTGTGAATTACGTACAATATTCATTAATAGTAGTTGAAAACGTACAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

102

Amino Acids

11.35

Weight (kDa)

5.99

Isoelectric Point (pI)

19.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	2 - 59	3.4e-11	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62065
fragaria_vesca	FvH4_7g29100
malus_domestica	MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica	Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376841
rosa_laevigata	RLG00000026565
rosa_multiflora	Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281680
rosa_rugosa	Rorug01G0399000
rosa_samantha	Rh1AG416200
rosa_wichuraiana	Rw1G036510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	135, 178
AcsI	RAATTY	2 cut(s)	99, 235
AfaI	GTAC	2 cut(s)	267, 297
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	290
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	99, 235
AseI	ATTAAT	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	27, 175
AvaII	GGWCC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	38, 166
BceAI	ACGGC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	27, 175
BsaAI	YACGTR	2 cut(s)	112, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	1 cut(s)	176
BspACI	CCGC	2 cut(s)	135, 178
BspANI	GGCC	1 cut(s)	176
BstBAI	YACGTR	2 cut(s)	112, 265
BstC8I	GCNNGC	1 cut(s)	178
BstSNI	TACGTA	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	27, 175
Csp6I	GTAC	2 cut(s)	266, 296
CviJI	RGCY	3 cut(s)	53, 162, 176
CviKI_1	RGCY	3 cut(s)	53, 162, 176
CviQI	GTAC	2 cut(s)	266, 296
Eco105I	TACGTA	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	27
FaiI	YATR	2 cut(s)	83, 231
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	1 cut(s)	219
HinfI	GANTC	2 cut(s)	208, 222
HpaII	CCGG	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	65
HpyCH4IV	ACGT	3 cut(s)	111, 264, 294
HpyCH4V	TGCA	1 cut(s)	50
HpySE526I	ACGT	3 cut(s)	111, 264, 294
LpnPI	CCDG	2 cut(s)	228, 232
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	3 cut(s)	111, 264, 294
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	6 cut(s)	15, 22, 99, 235, 259, 301
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	2 cut(s)	76, 177
MnlI	CCTC	2 cut(s)	164, 192
MseI	TTAA	3 cut(s)	68, 239, 278
MspI	CCGG	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Ppu21I	YACGTR	2 cut(s)	112, 265
PshBI	ATTAAT	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	27, 175
RsaI	GTAC	2 cut(s)	267, 297
RsaNI	GTAC	2 cut(s)	266, 296
SaqAI	TTAA	3 cut(s)	68, 239, 278
SatI	GCNGC	1 cut(s)	51
Sau96I	GGNCC	2 cut(s)	27, 175
SchI	GAGTC	1 cut(s)	231
SetI	ASST	5 cut(s)	48, 90, 114, 267, 297
SinI	GGWCC	1 cut(s)	27
SnaBI	TACGTA	1 cut(s)	265
Sse9I	AATT	6 cut(s)	15, 22, 99, 235, 259, 301
SsiI	CCGC	2 cut(s)	135, 178
SspI	AATATT	1 cut(s)	272
TaiI	ACGT	3 cut(s)	114, 267, 297
TasI	AATT	6 cut(s)	15, 22, 99, 235, 259, 301
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	68, 239, 278
Tru9I	TTAA	3 cut(s)	68, 239, 278
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	2 cut(s)	99, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.