Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8480275.1

Orthogroup ID

OG0016690

Physical Location & Seq

Genomic Coordinates Reverse (-)

780 .. 2186

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8480275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgctttcggaactaattacgaattggactatttataccaacaaggttgcagctcttgctactcttctggtcatcattctcattaaccttggcattggaattttgccacgcgttgataattttgcccacattggtggatttatcaccggattcctcattggatttgtgttgatgccccgtcctcaatacggatggctggagcagctgaatcttcctgctggtgctaatgccaatgtcaagtccaaattcaaggcctaccaatatgtgttatggcttctttcggttactctgttgattgttggccttacagatatagagtgctccagcgtgacggcccttgtatccgcttgctacaccttcataacgtatggctcaccggacccttctccggggtctccatgctgtcattccatggtaagtctcaaaatggtttccgatcccactgttgaaaatcggagatttacttgtagatgcttgatgagcctcatttccacttacaaccctaatggctatgcgcttgctactttgcccgacctttgtgaagtctctttgggttttaacattgatcctaacactgattgcaacttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006928 GO:0008150 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0019222 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070201 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:1901184 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

196

Amino Acids

21.39

Weight (kDa)

5.56

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62065
fragaria_vesca	FvH4_7g29100
malus_domestica	MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica	Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376841
rosa_laevigata	RLG00000026565
rosa_multiflora	Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281680
rosa_rugosa	Rorug01G0399000
rosa_samantha	Rh1AG416200
rosa_wichuraiana	Rw1G036510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	431, 560
AcsI	RAATTY	2 cut(s)	99, 245
AfiI	CCNNNNNNNGG	3 cut(s)	188, 388, 389
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	250, 449
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	2 cut(s)	53, 205
AluI	AGCT	2 cut(s)	53, 205
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	3 cut(s)	399, 425, 550
AlwI	GGATC	2 cut(s)	431, 560
AoxI	GGCC	3 cut(s)	252, 301, 333
ApeKI	GCWGC	2 cut(s)	50, 202
ApoI	RAATTY	2 cut(s)	99, 245
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	2 cut(s)	334, 379
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	136, 366
AvaII	GGWCC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	62, 214
BccI	CCATC	1 cut(s)	186
BceAI	ACGGC	1 cut(s)	348
BciVI	GTATCC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	3 cut(s)	399, 425, 550
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	2 cut(s)	51, 203
BlsI	GCNGC	2 cut(s)	52, 204
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	334, 379
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	162, 461
BpmI	CTGGAG	2 cut(s)	218, 307
BpuMI	CCSGG	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	88, 389, 411
BsaWI	WCCGGW	2 cut(s)	146, 376
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 388, 389
BseDI	CCNNGG	3 cut(s)	88, 389, 411
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	3 cut(s)	188, 388, 389
BseXI	GCAGC	2 cut(s)	62, 214
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	254, 303, 335
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	147, 377, 389
BslI	CCNNNNNNNGG	3 cut(s)	188, 388, 389
BsmAI	GTCTC	3 cut(s)	399, 425, 550
BsnI	GGCC	3 cut(s)	254, 303, 335
Bso31I	GGTCTC	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	436, 565
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	3 cut(s)	254, 303, 335
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	431, 560
BspTNI	GGTCTC	1 cut(s)	399
BssECI	CCNNGG	3 cut(s)	88, 389, 411
BssMI	GATC	2 cut(s)	436, 565
BssT1I	CCWWGG	2 cut(s)	88, 411
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	349, 519
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	2 cut(s)	439, 568
BstMAI	GTCTC	3 cut(s)	399, 425, 550
BstMBI	GATC	2 cut(s)	436, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 202, 480
BstSCI	CCNGG	1 cut(s)	388
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	62, 214
BstXI	CCANNNNNNTGG	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	254, 303, 335
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	2 cut(s)	441, 573
Cac8I	GCNNGC	2 cut(s)	349, 519
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	334, 379
CviAII	CATG	2 cut(s)	399, 412
DpnI	GATC	2 cut(s)	438, 567
DpnII	GATC	2 cut(s)	436, 565
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	88, 411
Eco147I	AGGCCT	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	88, 411
ErhI	CCWWGG	2 cut(s)	88, 411
FaeI	CATG	2 cut(s)	402, 415
FaiI	YATR	9 cut(s)	36, 264, 271, 314, 362, 369, 400, 413, 513
FatI	CATG	2 cut(s)	398, 411
Fnu4HI	GCNGC	2 cut(s)	51, 203
FokI	GGATG	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	51, 203
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	2 cut(s)	51, 203
GsuI	CTGGAG	2 cut(s)	218, 307
HaeIII	GGCC	3 cut(s)	254, 303, 335
HapII	CCGG	3 cut(s)	147, 377, 389
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	2 cut(s)	402, 415
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HinfI	GANTC	2 cut(s)	150, 208
HpaII	CCGG	3 cut(s)	147, 377, 389
HphI	GGTGA	2 cut(s)	136, 366
Hpy188I	TCNGA	3 cut(s)	10, 436, 456
HpyAV	CCTTC	2 cut(s)	367, 393
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	1 cut(s)	365
HpyCH4V	TGCA	2 cut(s)	50, 582
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 202, 480
HpySE526I	ACGT	1 cut(s)	365
Hsp92II	CATG	2 cut(s)	402, 415
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	2 cut(s)	436, 565
LmnI	GCTCC	2 cut(s)	199, 326
LpnPI	CCDG	8 cut(s)	53, 160, 182, 204, 228, 337, 390, 402
Lsp1109I	GCAGC	2 cut(s)	62, 214
LweI	GCATC	2 cut(s)	162, 461
MaeII	ACGT	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	283, 328
MalI	GATC	2 cut(s)	438, 567
MboI	GATC	2 cut(s)	436, 565
MboII	GAAGA	2 cut(s)	56, 203
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	5 cut(s)	15, 22, 99, 118, 245
MluI	ACGCGT	1 cut(s)	109
MnlI	CCTC	3 cut(s)	164, 192, 494
MseI	TTAA	2 cut(s)	84, 558
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	205
MspI	CCGG	3 cut(s)	147, 377, 389
MspR9I	CCNGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	56, 202, 480
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	2 cut(s)	436, 565
NlaIII	CATG	2 cut(s)	402, 415
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	328
OliI	CACNNNNGTG	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	150, 208
PkrI	GCNGC	2 cut(s)	52, 204
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	334, 379
PvuII	CAGCTG	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	84, 558
SatI	GCNGC	2 cut(s)	51, 203
Sau3AI	GATC	2 cut(s)	436, 565
Sau96I	GGNCC	2 cut(s)	334, 379
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	7 cut(s)	48, 55, 90, 207, 359, 368, 537
SfaNI	GCATC	2 cut(s)	162, 461
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	5 cut(s)	15, 22, 99, 118, 245
SseBI	AGGCCT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	88, 411
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	1 cut(s)	368
TasI	AATT	5 cut(s)	15, 22, 99, 118, 245
TfiI	GAWTC	2 cut(s)	150, 208
Tru1I	TTAA	2 cut(s)	84, 558
Tru9I	TTAA	2 cut(s)	84, 558
TscAI	CASTG	2 cut(s)	448, 580
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	50, 202
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	349
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	448, 580
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	2 cut(s)	99, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.