Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016690

Physical Location & Seq

Genomic Coordinates Reverse (-)

29584863 .. 29585231

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1197800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAATTGTGCAAAATGGGAAGCCGAACATTGATGATGATCGGGACGACGCTAACGTTGTTGTTTTCATCGGTGACATTGGTGTCTAGCACCGAAGAATGTGCTTCCGTGACGTCGCTTGTCACCACGTGCTACACGTTCATCACGTACGGGACACCGGACCCGTTTCCGGGGTCTCCGTGCTGCAATGCTATGGCCAATCTCAAGGTTATTGCCGACACCATTGAAAACCGGAGATTTGCATGTAGATGCTTGATGGGCCTCATTGCAACGTACAACCCAAATGCCTATGCCATTGCCACTTTGCCCGACTTTTGTCAAGTCTCTTTGGGCTTCAACATCGATCCTAATACCGATTGCAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0016020 GO:0033036 GO:0051179 GO:0051234 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.2

Weight (kDa)

4.56

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62065
fragaria_vesca	FvH4_7g29100
malus_domestica	MD01G1197800.v1.1 MD07G1265400.v1.1
prunus_persica	Prupe.2G291200_v2.0.a1 Prupe.2G291200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0376841
rosa_laevigata	RLG00000026565
rosa_multiflora	Rmu_co8323115.1_g000001 Rmu_co8480275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281680
rosa_rugosa	Rorug01G0399000
rosa_samantha	Rh1AG416200
rosa_wichuraiana	Rw1G036510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
AatII	GACGTC	1 cut(s)	116
AclI	AACGTT	1 cut(s)	56
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	195
AcvI	CACGTG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	113
AdeI	CACNNNGTG	1 cut(s)	129
AfaI	GTAC	2 cut(s)	149, 275
AfiI	CCNNNNNNNGG	2 cut(s)	169, 170
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	227, 337
Alw26I	GTCTC	2 cut(s)	180, 328
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	2 cut(s)	195, 259
ApeKI	GCWGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	160, 259
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	85, 115
AvaII	GGWCC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	197
BbrPI	CACGTG	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	180, 328
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 259
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	239
BoxI	GACNNNNGTC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	342
BsaAI	YACGTR	2 cut(s)	129, 147
BsaBI	GATNNNNATC	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	157, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 170
Bse3DI	GCAATG	3 cut(s)	193, 264, 294
Bse8I	GATNNNNATC	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	170
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	169, 170
BseMI	GCAATG	3 cut(s)	193, 264, 294
BseXI	GCAGC	1 cut(s)	170
BshFI	GGCC	2 cut(s)	197, 261
BshVI	ATCGAT	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	158, 170, 232
BsiWI	CGTACG	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	58, 166
BslI	CCNNNNNNNGG	2 cut(s)	169, 170
BsmAI	GTCTC	2 cut(s)	180, 328
BsmFI	GGGAC	2 cut(s)	58, 166
BsnI	GGCC	2 cut(s)	197, 261
Bso31I	GGTCTC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	39, 343
BspANI	GGCC	2 cut(s)	197, 261
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	180
BsrDI	GCAATG	3 cut(s)	193, 264, 294
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	2 cut(s)	39, 343
BssNI	GRCGYC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	2 cut(s)	129, 147
BstKTI	GATC	2 cut(s)	42, 346
BstMAI	GTCTC	2 cut(s)	180, 328
BstMBI	GATC	2 cut(s)	39, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	246
BstPAI	GACNNNNGTC	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	197, 261
BsuTUI	ATCGAT	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	160, 259
ClaI	ATCGAT	1 cut(s)	342
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	2 cut(s)	148, 274
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	4 cut(s)	24, 197, 261, 333
CviKI_1	RGCY	4 cut(s)	24, 197, 261, 333
CviQI	GTAC	2 cut(s)	148, 274
DpnI	GATC	2 cut(s)	41, 345
DpnII	GATC	2 cut(s)	39, 343
DraIII	CACNNNGTG	1 cut(s)	129
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	160
Eco72I	CACGTG	1 cut(s)	129
FaeI	CATG	1 cut(s)	246
FaiI	YATR	3 cut(s)	194, 244, 291
FaqI	GGGAC	2 cut(s)	58, 166
FatI	CATG	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	197, 261
HapII	CCGG	3 cut(s)	158, 170, 232
HgaI	GACGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	246
HpaII	CCGG	3 cut(s)	158, 170, 232
HphI	GGTGA	2 cut(s)	85, 115
Hpy188III	TCNNGA	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	52, 118
HpyCH4IV	ACGT	6 cut(s)	56, 113, 128, 137, 146, 272
HpyCH4V	TGCA	5 cut(s)	12, 186, 242, 269, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpySE526I	ACGT	6 cut(s)	56, 113, 128, 137, 146, 272
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	39, 343
LpnPI	CCDG	3 cut(s)	171, 183, 245
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	6 cut(s)	56, 113, 128, 137, 146, 272
MaeIII	GTNAC	3 cut(s)	73, 109, 121
MalI	GATC	2 cut(s)	41, 345
MboI	GATC	2 cut(s)	39, 343
MboII	GAAGA	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	197
MnlI	CCTC	1 cut(s)	272
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	247
Msp20I	TGGCCA	1 cut(s)	197
MspI	CCGG	3 cut(s)	158, 170, 232
MspR9I	CCNGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	39, 343
NlaIII	CATG	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	3 cut(s)	73, 109, 121
NspI	RCATGY	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	3 cut(s)	53, 134, 143
Pfl23II	CGTACG	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	185
PmaCI	CACGTG	1 cut(s)	129
PmlI	CACGTG	1 cut(s)	129
Ppu21I	YACGTR	2 cut(s)	129, 147
PshAI	GACNNNNGTC	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	56
PspCI	CACGTG	1 cut(s)	129
PspLI	CGTACG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	160, 259
RsaI	GTAC	2 cut(s)	149, 275
RsaNI	GTAC	2 cut(s)	148, 274
RseI	CAYNNNNRTG	1 cut(s)	247
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	2 cut(s)	39, 343
Sau96I	GGNCC	2 cut(s)	160, 259
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	7 cut(s)	59, 116, 131, 140, 149, 210, 275
SfaNI	GCATC	1 cut(s)	239
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	5
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	169
TaiI	ACGT	6 cut(s)	59, 116, 131, 140, 149, 275
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	5
TseFI	GTSAC	3 cut(s)	73, 109, 121
TseI	GCWGC	1 cut(s)	183
Tsp45I	GTSAC	3 cut(s)	73, 109, 121
TspDTI	ATGAA	2 cut(s)	57, 130
TspGWI	ACGGA	2 cut(s)	97, 168
VpaK11BI	GGWCC	1 cut(s)	160
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.