AT5G62420

reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016155
Physical Location & Seq
Forward (+)
25064793 .. 25066336
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62420.1

Sequence Viewer

Length: 951 bp
ATGAGGAGTGACGTGGCACGTCTCAGGTGTGGGGAGACGATTCCATTGCTTGGAATGGGAACTTATTGTCCTCAAAAAGATCGAGAGAGCACCATATCAGCCGTCCATCAAGCTATTAAGATAGGGTACAGACATTTTGACACAGCAAAGATATATGGATCAGAAGAAGCTCTTGGAACTGCATTGGGACAAGCTATCTCCTATGGGACTGTCCAAAGAGATGATCTTTTTGTCACTTCAAAGTTATGGTCTAGTGATCACCATGACCCTATCTCTGCCCTCATACAAACTCTCAAGACAATGGGTCTAGACTATCTTGACAACTACTTGGTGCATTGGCCAATAAAGCTAAAGCCGGGAGTTAGTGAGCCTATACCAAAGGAAGATGAGTTTGAGAAAGATTTGGGAATTGAAGAAACTTGGCAAGGCATGGAGAGATGCTTGGAGATGGGTTTGTGCAGATCTATTGGTGTTAGCAACTTCTCTTCTAAGAAGATCTTTGATCTCCTTGATTTCGCTTCTGTCTCTCCATCGGTGAATCAGGTGGAAATGCATCCATTGTGGAGACAAAGAAAGCTAAGGAAAGTGTGTGAAGAGAACAATATCCATGTAAGTGGATACTCCCCACTTGGTGGGCCAGGGAATTGTTGGGGATCAACGGCTGTGATTGAACATCCTATCATCAAATCCATTGCTCTCAAGCATAATGCCACTCCTGCTCAGGTGGCTCTAAGATGGGGAATGTCAAAAGGAGCAAGTGTGATCGTCAAGAGTTTTAATGGAGCAAGAATGATAGAGAACAAGAGAGCCTTAGAGATTAAATTGGATGATCAAGACTTGTCACTCATTGACCATTTGGAGGAATGGAAGATCATGAGAGGAGACTTCCTTGTTAATCAAACCACAAGCCCTTACAAATCCATCCAACAACTTTGGGATAATGAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

316

Amino Acids

35.57

Weight (kDa)

6.22

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 18 - 287 7.2e-49 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62420
fragaria_vesca FvH4_7g27320
malus_domestica MD07G1252700.v1.1
prunus_persica Prupe.2G276200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374161
rosa_laevigata RLG00000026757
rosa_multiflora Rmu_ssc0000007.1_g000043 Rmu_ssc0000450.1_g000003
rosa_roxburghii Rroxscaffold_4G00283670
rosa_rugosa Rorug01G0381200
rosa_samantha Rh1AG392200 Rh1BG356200 Rh1CG369100 Rh1DG386700
rosa_wichuraiana Rw1G034350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 50, 632
AclWI GGATC 2 cut(s) 166, 661
AcoI YGGCCR 1 cut(s) 338
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 3 cut(s) 50, 632, 859
AgsI TTSAA 3 cut(s) 240, 413, 671
AhdI GACNNNNNGTC 1 cut(s) 303
AjiI CACGTC 2 cut(s) 13, 20
AjnI CCWGG 1 cut(s) 637
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AloI GAACNNNNNNTCC 2 cut(s) 52, 84
AluBI AGCT 5 cut(s) 113, 170, 194, 349, 577
AluI AGCT 5 cut(s) 113, 170, 194, 349, 577
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 5 cut(s) 26, 29, 529, 559, 876
AlwI GGATC 2 cut(s) 166, 661
AoxI GGCC 2 cut(s) 338, 635
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspS9I GGNCC 1 cut(s) 635
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 251, 547
BalI TGGCCA 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 92
BccI CCATC 5 cut(s) 114, 442, 538, 729, 929
BceAI ACGGC 2 cut(s) 86, 675
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 1 cut(s) 639
BciVI GTATCC 1 cut(s) 611
BclI TGATCA 2 cut(s) 256, 829
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 5 cut(s) 26, 29, 529, 559, 876
BfaI CTAG 2 cut(s) 252, 308
BfuI GTATCC 1 cut(s) 611
BglII AGATCT 2 cut(s) 461, 495
Bme1390I CCNGG 2 cut(s) 357, 639
BmeRI GACNNNNNGTC 1 cut(s) 303
BmgBI CACGTC 2 cut(s) 13, 20
BmgT120I GGNCC 1 cut(s) 635
BmrFI CCNGG 2 cut(s) 357, 639
BmsI GCATC 2 cut(s) 428, 562
Bpu10I CCTNAGC 2 cut(s) 578, 720
BpuEI CTTGAG 2 cut(s) 278, 683
BpuMI CCSGG 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 638
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 632, 859
Bse3DI GCAATG 2 cut(s) 44, 690
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 638
BseGI GGATG 4 cut(s) 553, 673, 832, 921
BseLI CCNNNNNNNGG 3 cut(s) 50, 632, 859
BseMI GCAATG 2 cut(s) 44, 690
BseMII CTCAG 2 cut(s) 37, 734
BseRI GAGGAG 2 cut(s) 19, 894
BsgI GTGCAG 1 cut(s) 478
BshFI GGCC 2 cut(s) 340, 637
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 356
BslFI GGGAC 2 cut(s) 201, 220
BslI CCNNNNNNNGG 3 cut(s) 50, 632, 859
BsmAI GTCTC 5 cut(s) 26, 29, 529, 559, 876
BsmBI CGTCTC 2 cut(s) 26, 29
BsmFI GGGAC 2 cut(s) 201, 220
BsnI GGCC 2 cut(s) 340, 637
Bsp1286I GDGCHC 1 cut(s) 92
BspANI GGCC 2 cut(s) 340, 637
BspCNI CTCAG 2 cut(s) 36, 733
BspHI TCATGA 1 cut(s) 873
BspPI GGATC 2 cut(s) 166, 661
BsrDI GCAATG 2 cut(s) 44, 690
BssECI CCNNGG 1 cut(s) 638
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 490, 588
BstDEI CTNAG 6 cut(s) 23, 489, 578, 720, 731, 811
BstF5I GGATG 4 cut(s) 553, 673, 832, 921
BstMAI GTCTC 5 cut(s) 26, 29, 529, 559, 876
BstMWI GCNNNNNNNGC 3 cut(s) 346, 716, 725
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 2 cut(s) 355, 637
BstX2I RGATCY 2 cut(s) 461, 495
BstXI CCANNNNNNTGG 1 cut(s) 614
BstYI RGATCY 2 cut(s) 461, 495
BsuI GTATCC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 340, 637
BtrI CACGTC 2 cut(s) 13, 20
BtsCI GGATG 4 cut(s) 553, 673, 832, 921
CciI TCATGA 1 cut(s) 873
Cfr13I GGNCC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 127
CviAII CATG 4 cut(s) 263, 430, 608, 874
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 6 cut(s) 23, 489, 578, 720, 731, 811
DraIII CACNNNGTG 1 cut(s) 632
DriI GACNNNNNGTC 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 490, 588
Eam1105I GACNNNNNGTC 1 cut(s) 303
EarI CTCTTC 2 cut(s) 490, 588
EcoRII CCWGG 1 cut(s) 637
EcoT22I ATGCAT 1 cut(s) 555
Esp3I CGTCTC 2 cut(s) 26, 29
FaeI CATG 4 cut(s) 266, 433, 611, 877
FalI AAGNNNNNCTT 6 cut(s) 156, 188, 482, 514, 794, 826
FaqI GGGAC 2 cut(s) 201, 220
FatI CATG 4 cut(s) 262, 429, 607, 873
FbaI TGATCA 2 cut(s) 256, 829
FokI GGATG 4 cut(s) 540, 660, 839, 908
FspBI CTAG 2 cut(s) 252, 308
HaeIII GGCC 2 cut(s) 340, 637
HapII CCGG 1 cut(s) 356
Hin1II CATG 4 cut(s) 266, 433, 611, 877
HinfI GANTC 2 cut(s) 40, 538
HpaII CCGG 1 cut(s) 356
HphI GGTGA 2 cut(s) 251, 547
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 7 cut(s) 83, 295, 308, 317, 769, 833, 874
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 12, 19
HpyCH4V TGCA 4 cut(s) 182, 334, 459, 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 346, 716, 725
HpyF3I CTNAG 6 cut(s) 23, 489, 578, 720, 731, 811
HpySE526I ACGT 2 cut(s) 12, 19
Hsp92II CATG 4 cut(s) 266, 433, 611, 877
Ksp22I TGATCA 2 cut(s) 256, 829
LmnI GCTCC 2 cut(s) 752, 782
LpnPI CCDG 7 cut(s) 10, 369, 527, 624, 651, 707, 729
LweI GCATC 2 cut(s) 428, 562
MaeI CTAG 2 cut(s) 252, 308
MaeII ACGT 2 cut(s) 12, 19
MaeIII GTNAC 3 cut(s) 8, 232, 840
MboII GAAGA 7 cut(s) 176, 395, 425, 477, 505, 605, 880
MflI RGATCY 2 cut(s) 461, 495
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 3 cut(s) 408, 643, 821
MluNI TGGCCA 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 949
MnlI CCTC 4 cut(s) 81, 290, 853, 872
Mox20I TGGCCA 1 cut(s) 340
Mph1103I ATGCAT 1 cut(s) 555
MscI TGGCCA 1 cut(s) 340
MseI TTAA 5 cut(s) 117, 777, 819, 894, 949
MslI CAYNNNNRTG 1 cut(s) 612
Msp20I TGGCCA 1 cut(s) 340
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 357, 639
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 3 cut(s) 346, 716, 725
NciI CCSGG 1 cut(s) 357
NlaIII CATG 4 cut(s) 266, 433, 611, 877
NmuCI GTSAC 3 cut(s) 8, 232, 840
NsiI ATGCAT 1 cut(s) 555
PagI TCATGA 1 cut(s) 873
PfeI GAWTC 2 cut(s) 40, 538
PflMI CCANNNNNTGG 2 cut(s) 50, 632
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspPI GGNCC 1 cut(s) 635
PsuI RGATCY 2 cut(s) 461, 495
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 5 cut(s) 117, 777, 819, 894, 949
Sau96I GGNCC 1 cut(s) 635
ScrFI CCNGG 2 cut(s) 357, 639
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 2 cut(s) 428, 562
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 293, 698
SmoI CTYRAG 2 cut(s) 293, 698
Sse9I AATT 3 cut(s) 408, 643, 821
SspMI CTAG 2 cut(s) 252, 308
StyD4I CCNGG 2 cut(s) 355, 637
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 2 cut(s) 15, 22
TaqI TCGA 1 cut(s) 82
TasI AATT 3 cut(s) 408, 643, 821
TfiI GAWTC 2 cut(s) 40, 538
Tru1I TTAA 5 cut(s) 117, 777, 819, 894, 949
Tru9I TTAA 5 cut(s) 117, 777, 819, 894, 949
TseFI GTSAC 3 cut(s) 8, 232, 840
Tsp45I GTSAC 3 cut(s) 8, 232, 840
Van91I CCANNNNNTGG 2 cut(s) 50, 632
XbaI TCTAGA 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XspI CTAG 2 cut(s) 252, 308
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.