Rmu_ssc0000007.1_g000043

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000007.1
OG0016155
Physical Location & Seq
Forward (+)
204869 .. 206350
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000007.1_g000043.1.cds

Sequence Viewer

Length: 834 bp
atgcagatgggctacaggcactttgacacagccagaatatatggttctgaggctgccctgggaaacgctttaacagaggcaattcaggatgggactgtagaaagagaagacatttttgttacctctaagttatggggttgtcatcaccatgaccctgtttcagctctgagacaaactctaaagactatggggatggaccatttggacatgtacttggttcactggccagtgaaattgaagccatgggcttctgatgccattccgaatgaggatcactttgaggaactagacatagagacaacctgggctggtatggagaagtgcctggacttgggattgtgtaggtctcttggtgtaagcaatttctcaagcaaaaaaattgaacagcttttggaatttgcctctgtgtctccagctgttaatcaggtggagatgcacccaatgtggaggcaagcaagactgagaagggtgtgtgggcaccacaaaatccatgtcagtgcttactcaccacttggtgggccaggaaatgcatggggctcaacacttgtggtggacagcccgatcatccagtccattgctctcaagcacagagcaactccagcccaggttgcactacgatggggattatcaaaggggtcaagtgtgattgtgaagagctttaatcaagaaaggatgaaggagaacatcggagccgttgatctgaaattggacgatgaggatttgatggagatagagaagttgggggagaggaagatcatgaggggagagtctctagtgaatcaaactacaagtccatacaagacacttgaagatttatgggatgatgaaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

277

Amino Acids

31.22

Weight (kDa)

5.74

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62420
fragaria_vesca FvH4_7g27320
malus_domestica MD07G1252700.v1.1
prunus_persica Prupe.2G276200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374161
rosa_laevigata RLG00000026757
rosa_multiflora Rmu_ssc0000007.1_g000043 Rmu_ssc0000450.1_g000003
rosa_roxburghii Rroxscaffold_4G00283670
rosa_rugosa Rorug01G0381200
rosa_samantha Rh1AG392200 Rh1BG356200 Rh1CG369100 Rh1DG386700
rosa_wichuraiana Rw1G034350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 515
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 2 cut(s) 395, 828
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 331, 515
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 3 cut(s) 238, 383, 809
AjnI CCWGG 5 cut(s) 57, 302, 324, 520, 603
AluBI AGCT 4 cut(s) 164, 388, 416, 657
AluI AGCT 4 cut(s) 164, 388, 416, 657
Alw26I GTCTC 5 cut(s) 163, 290, 351, 414, 774
AlwI GGATC 1 cut(s) 279
AoxI GGCC 2 cut(s) 224, 518
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 395, 828
ArsI GACNNNNNNTTYG 4 cut(s) 477, 509, 775, 807
AspS9I GGNCC 2 cut(s) 196, 518
AsuHPI GGTGA 2 cut(s) 137, 498
AvaII GGWCC 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 480
BalI TGGCCA 1 cut(s) 226
BanI GGYRCC 1 cut(s) 477
BanII GRGCYC 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 40
BccI CCATC 4 cut(s) 83, 187, 612, 718
BceAI ACGGC 1 cut(s) 677
BciT130I CCWGG 5 cut(s) 59, 304, 326, 522, 605
BcoDI GTCTC 5 cut(s) 163, 290, 351, 414, 774
BfaI CTAG 2 cut(s) 287, 773
BfmI CTRYAG 2 cut(s) 13, 96
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 5 cut(s) 59, 304, 326, 522, 605
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 196, 518
BmiI GGNNCC 2 cut(s) 479, 691
BmrFI CCNGG 5 cut(s) 59, 304, 326, 522, 605
BmsI GCATC 2 cut(s) 244, 423
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 160, 192
BpmI CTGGAG 2 cut(s) 396, 582
BpuEI CTTGAG 2 cut(s) 352, 566
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 5 cut(s) 57, 58, 242, 303, 603
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 515
Bse1I ACTGG 3 cut(s) 227, 227, 568
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 5 cut(s) 59, 304, 326, 522, 605
BseDI CCNNGG 5 cut(s) 57, 58, 242, 303, 603
BseGI GGATG 5 cut(s) 94, 198, 564, 678, 826
BseLI CCNNNNNNNGG 2 cut(s) 331, 515
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 3 cut(s) 39, 158, 452
BseNI ACTGG 3 cut(s) 227, 227, 568
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 226, 520
BshNI GGYRCC 1 cut(s) 477
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 331, 515
BsmAI GTCTC 5 cut(s) 163, 290, 351, 414, 774
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 2 cut(s) 226, 520
Bso31I GGTCTC 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 480, 539
Bsp143I GATC 4 cut(s) 271, 561, 697, 753
Bsp19I CCATGG 1 cut(s) 242
BspANI GGCC 2 cut(s) 226, 520
BspCNI CTCAG 3 cut(s) 40, 159, 453
BspHI TCATGA 1 cut(s) 756
BspLI GGNNCC 2 cut(s) 479, 691
BspPI GGATC 1 cut(s) 279
BspQI GCTCTTC 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 477
BspTNI GGTCTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 573
BsrI ACTGG 3 cut(s) 227, 227, 568
BssECI CCNNGG 5 cut(s) 57, 58, 242, 303, 603
BssMI GATC 4 cut(s) 271, 561, 697, 753
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 5 cut(s) 59, 304, 326, 522, 605
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 4 cut(s) 48, 126, 167, 461
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 5 cut(s) 94, 198, 564, 678, 826
BstKTI GATC 4 cut(s) 274, 564, 700, 756
BstMAI GTCTC 5 cut(s) 163, 290, 351, 414, 774
BstMBI GATC 4 cut(s) 271, 561, 697, 753
BstMWI GCNNNNNNNGC 3 cut(s) 254, 599, 608
BstNI CCWGG 5 cut(s) 59, 304, 326, 522, 605
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 5 cut(s) 57, 302, 324, 520, 603
BstSFI CTRYAG 2 cut(s) 13, 96
BstSLI GKGCMC 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 226, 520
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 5 cut(s) 94, 198, 564, 678, 826
BtsIMutI CAGTG 3 cut(s) 220, 234, 502
Cac8I GCNNGC 1 cut(s) 453
CciI TCATGA 1 cut(s) 756
Cfr13I GGNCC 2 cut(s) 196, 518
Csp6I GTAC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviAII CATG 6 cut(s) 149, 208, 243, 491, 531, 757
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 4 cut(s) 48, 126, 167, 461
DpnI GATC 4 cut(s) 273, 563, 699, 755
DpnII GATC 4 cut(s) 271, 561, 697, 753
DraIII CACNNNGTG 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 196
EcoRII CCWGG 5 cut(s) 57, 302, 324, 520, 603
EcoT14I CCWWGG 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 6 cut(s) 152, 211, 246, 494, 534, 760
FaqI GGGAC 1 cut(s) 106
FatI CATG 6 cut(s) 148, 207, 242, 490, 530, 756
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 4 cut(s) 101, 205, 551, 685
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 287, 773
GluI GCNGC 1 cut(s) 54
GsuI CTGGAG 2 cut(s) 396, 582
HaeIII GGCC 2 cut(s) 226, 520
Hin1II CATG 6 cut(s) 152, 211, 246, 494, 534, 760
HinfI GANTC 2 cut(s) 767, 778
HphI GGTGA 2 cut(s) 137, 498
Hpy166II GTNNAC 2 cut(s) 220, 553
Hpy188I TCNGA 6 cut(s) 49, 168, 253, 264, 689, 702
Hpy188III TCNNGA 3 cut(s) 86, 665, 757
Hpy8I GTNNAC 2 cut(s) 220, 553
HpyAV CCTTC 2 cut(s) 459, 670
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 4, 436, 530, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 599, 608
HpyF3I CTNAG 4 cut(s) 48, 126, 167, 461
Hsp92II CATG 6 cut(s) 152, 211, 246, 494, 534, 760
Kzo9I GATC 4 cut(s) 271, 561, 697, 753
LguI GCTCTTC 1 cut(s) 647
LmnI GCTCC 1 cut(s) 689
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 244, 423
MaeI CTAG 2 cut(s) 287, 773
MaeIII GTNAC 1 cut(s) 118
MalI GATC 4 cut(s) 273, 563, 699, 755
MboI GATC 4 cut(s) 271, 561, 697, 753
MboII GAAGA 4 cut(s) 119, 664, 763, 821
MhlI GDGCHC 2 cut(s) 480, 539
MlsI TGGCCA 1 cut(s) 226
MluCI AATT 7 cut(s) 81, 233, 361, 378, 395, 704, 828
MluNI TGGCCA 1 cut(s) 226
MlyI GAGTC 1 cut(s) 776
Mox20I TGGCCA 1 cut(s) 226
Mph1103I ATGCAT 1 cut(s) 532
MscI TGGCCA 1 cut(s) 226
MseI TTAA 3 cut(s) 71, 420, 660
MslI CAYNNNNRTG 3 cut(s) 147, 495, 616
Msp20I TGGCCA 1 cut(s) 226
MspA1I CMGCKG 1 cut(s) 416
MspR9I CCNGG 5 cut(s) 59, 304, 326, 522, 605
MvaI CCWGG 5 cut(s) 59, 304, 326, 522, 605
MwoI GCNNNNNNNGC 3 cut(s) 254, 599, 608
NcoI CCATGG 1 cut(s) 242
NdeII GATC 4 cut(s) 271, 561, 697, 753
NlaIII CATG 6 cut(s) 152, 211, 246, 494, 534, 760
NlaIV GGNNCC 2 cut(s) 479, 691
NsiI ATGCAT 1 cut(s) 532
NspI RCATGY 1 cut(s) 211
PagI TCATGA 1 cut(s) 756
PasI CCCWGGG 1 cut(s) 58
PciI ACATGT 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 647
PfeI GAWTC 1 cut(s) 778
PflMI CCANNNNNTGG 1 cut(s) 515
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
PscI ACATGT 1 cut(s) 207
Psp6I CCWGG 5 cut(s) 57, 302, 324, 520, 603
PspGI CCWGG 5 cut(s) 57, 302, 324, 520, 603
PspN4I GGNNCC 2 cut(s) 479, 691
PspPI GGNCC 2 cut(s) 196, 518
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 3 cut(s) 147, 495, 616
SapI GCTCTTC 1 cut(s) 647
SaqAI TTAA 3 cut(s) 71, 420, 660
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 4 cut(s) 271, 561, 697, 753
Sau96I GGNCC 2 cut(s) 196, 518
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 5 cut(s) 59, 304, 326, 522, 605
SduI GDGCHC 2 cut(s) 480, 539
SetI ASST 9 cut(s) 125, 166, 305, 347, 390, 418, 429, 609, 659
SfaNI GCATC 2 cut(s) 244, 423
SfcI CTRYAG 2 cut(s) 13, 96
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 3 cut(s) 147, 495, 616
SmlI CTYRAG 2 cut(s) 367, 581
SmoI CTYRAG 2 cut(s) 367, 581
Sse9I AATT 7 cut(s) 81, 233, 361, 378, 395, 704, 828
SspMI CTAG 2 cut(s) 287, 773
StyD4I CCNGG 5 cut(s) 57, 302, 324, 520, 603
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 97
TasI AATT 7 cut(s) 81, 233, 361, 378, 395, 704, 828
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 3 cut(s) 71, 420, 660
Tru9I TTAA 3 cut(s) 71, 420, 660
TscAI CASTG 3 cut(s) 227, 234, 502
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 689
TspRI CASTG 3 cut(s) 227, 234, 502
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 2 cut(s) 395, 828
XceI RCATGY 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 528
XspI CTAG 2 cut(s) 287, 773
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.