Rorug01G0381200

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016155
Physical Location & Seq
Reverse (-)
49343910 .. 49345148
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0381200.1

Sequence Viewer

Length: 552 bp
ATGGGTGGTGGTAAGGATAAGCATCAAGGTGGCGGTAGTGGTGAAGAAACTGACAAGGGCCTTTTCGGTAGTCTTCTGCACGGCGTTGCCGGAGGACAGCATGGCTACCCACCTCAACAACATGGCTACCCTCCACAGGGCTATCCACCGCAACAGGGATACCCTCCACAGGGCTATCCACAGCAGCAGGGTGGATATCCCCCACAAGGGTACTCGCCAGCTGGGTATCCGCCGCAGCAGGGCTACCCTCCACAAGGGTACCCGCCCGCCGCTCACGGCGGTCATTCTGGAGGAGGCCATGGTATGGGGGGACTACTCTCTGGGGGTGCAGCTGCTGCTGCAGCCGCATACGGCGCTCACCAATTGACAGGCCATCACGGTCAAGGCTCTCACCAAGTCTCCCACGGCGGCTACTATCCATCTCACGGCATGCCAGGGTACGGGGGGCACGGCAAGGTTAAGCATGGTAAATTCGGGAAGCATGGGGGCAAGCACGGCAAGTTTGGGAAGCACGGGAAGCACGGTGGAGGCAAATTCAAGAAGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

183

Amino Acids

18.55

Weight (kDa)

9.72

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62420
fragaria_vesca FvH4_7g27320
malus_domestica MD07G1252700.v1.1
prunus_persica Prupe.2G276200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374161
rosa_laevigata RLG00000026757
rosa_multiflora Rmu_ssc0000007.1_g000043 Rmu_ssc0000450.1_g000003
rosa_roxburghii Rroxscaffold_4G00283670
rosa_rugosa Rorug01G0381200
rosa_samantha Rh1AG392200 Rh1BG356200 Rh1CG369100 Rh1DG386700
rosa_wichuraiana Rw1G034350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 304
AccBSI CCGCTC 1 cut(s) 272
AcsI RAATTY 2 cut(s) 470, 533
AfaI GTAC 3 cut(s) 212, 260, 440
AgsI TTSAA 1 cut(s) 538
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 2 cut(s) 221, 332
AluI AGCT 2 cut(s) 221, 332
Alw26I GTCTC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 3 cut(s) 58, 295, 370
ApeKI GCWGC 7 cut(s) 184, 235, 329, 332, 335, 338, 341
ApoI RAATTY 2 cut(s) 470, 533
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 53, 350, 383
BaeGI GKGCMC 1 cut(s) 450
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BanI GGYRCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 65
BbvI GCAGC 7 cut(s) 196, 247, 319, 322, 325, 341, 353
BccI CCATC 2 cut(s) 381, 427
BceAI ACGGC 7 cut(s) 97, 292, 367, 421, 442, 466, 511
BciT130I CCWGG 1 cut(s) 435
BciVI GTATCC 2 cut(s) 152, 237
BcoDI GTCTC 1 cut(s) 403
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 357
BfuI GTATCC 2 cut(s) 152, 237
Bme1390I CCNGG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 298, 403, 434
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bse8I GATNNNNATC 1 cut(s) 21
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 298, 403, 434
BseJI GATNNNNATC 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 306
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 7 cut(s) 196, 247, 319, 322, 325, 341, 353
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 2 cut(s) 62, 348
BshFI GGCC 3 cut(s) 60, 297, 372
BshNI GGYRCC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 3 cut(s) 60, 297, 372
Bsp1286I GDGCHC 1 cut(s) 450
Bsp19I CCATGG 1 cut(s) 298
BspANI GGCC 3 cut(s) 60, 297, 372
BspLI GGNNCC 1 cut(s) 260
BspMAI CTGCAG 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 258
BsrBI CCGCTC 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 298, 403, 434
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 2 cut(s) 380, 524
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 219, 267, 431, 491
BstDSI CCRYGG 2 cut(s) 298, 403
BstENI CCTNNNNNAGG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 403
BstMWI GCNNNNNNNGC 7 cut(s) 335, 338, 341, 344, 353, 495, 517
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 450
BstV1I GCAGC 7 cut(s) 196, 247, 319, 322, 325, 341, 353
BstV2I GAAGAC 1 cut(s) 65
BsuI GTATCC 2 cut(s) 152, 237
BsuRI GGCC 3 cut(s) 60, 297, 372
BtgI CCRYGG 2 cut(s) 298, 403
Cac8I GCNNGC 4 cut(s) 219, 267, 431, 491
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 3 cut(s) 211, 259, 439
CviAII CATG 6 cut(s) 101, 122, 299, 430, 464, 482
CviQI GTAC 3 cut(s) 211, 259, 439
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 298
Eco32I GATATC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 433
EcoRV GATATC 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 6 cut(s) 104, 125, 302, 433, 467, 485
FaiI YATR 8 cut(s) 102, 123, 300, 305, 349, 431, 465, 483
FaqI GGGAC 1 cut(s) 324
FatI CATG 6 cut(s) 100, 121, 298, 429, 463, 481
FauI CCCGC 2 cut(s) 270, 274
GlaI GCGC 1 cut(s) 355
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 3 cut(s) 60, 297, 372
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 356
Hin1II CATG 6 cut(s) 104, 125, 302, 433, 467, 485
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HpaII CCGG 1 cut(s) 90
HphI GGTGA 3 cut(s) 53, 350, 383
Hpy188III TCNNGA 3 cut(s) 288, 475, 538
HpyCH4III ACNGT 2 cut(s) 380, 524
HpyCH4V TGCA 3 cut(s) 79, 329, 341
HpyF10VI GCNNNNNNNGC 7 cut(s) 335, 338, 341, 344, 353, 495, 517
Hsp92II CATG 6 cut(s) 104, 125, 302, 433, 467, 485
HspAI GCGC 1 cut(s) 354
KpnI GGTACC 1 cut(s) 262
Lsp1109I GCAGC 7 cut(s) 196, 247, 319, 322, 325, 341, 353
LweI GCATC 1 cut(s) 31
MbiI CCGCTC 1 cut(s) 272
MboII GAAGA 2 cut(s) 56, 65
MfeI CAATTG 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 3 cut(s) 362, 470, 533
MnlI CCTC 8 cut(s) 86, 123, 141, 174, 258, 284, 287, 521
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 2 cut(s) 221, 332
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 435
MunI CAATTG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 7 cut(s) 335, 338, 341, 344, 353, 495, 517
NcoI CCATGG 1 cut(s) 298
NlaIII CATG 6 cut(s) 104, 125, 302, 433, 467, 485
NlaIV GGNNCC 1 cut(s) 260
NspI RCATGY 1 cut(s) 433
PaeI GCATGC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 58
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 335
PvuII CAGCTG 2 cut(s) 221, 332
RsaI GTAC 3 cut(s) 212, 260, 440
RsaNI GTAC 3 cut(s) 211, 259, 439
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 459
Sau96I GGNCC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 450
SetI ASST 5 cut(s) 31, 115, 223, 334, 459
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 27
SphI GCATGC 1 cut(s) 433
Sse9I AATT 3 cut(s) 362, 470, 533
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 380, 524
TasI AATT 3 cut(s) 362, 470, 533
TauI GCSGC 4 cut(s) 235, 272, 347, 411
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TseI GCWGC 7 cut(s) 184, 235, 329, 332, 335, 338, 341
Van91I CCANNNNNTGG 1 cut(s) 304
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 2 cut(s) 470, 533
XceI RCATGY 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.