Rh1AG392200

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016155
Physical Location & Seq
Reverse (-)
62104556 .. 62105477
922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG392200.1

Sequence Viewer

Length: 648 bp
ATGGGGATGGACCATTTGGACATGTACTTGGTTCACTGGCCAGTGAAATTGAAGCCATGGGCTTCTGATGCCATTCCGAAAGAGGATCACTTTGAGGAACTAGACATAGAGACAACCTGGGCTGGTATGGAGAAGTGCCTGGACTTGGGATTGTGTAGGTCTATTGGTGTAAGCAATTTCTCAAGCAAAAAAATTGAACAGCTTTTGGAATTTGCCTCTGTGCCTCCAGCTGTTAATCAGGTGGAGATGCACCCAATGTGGAGGCAAGCAAGACTGAGAAAGGTGTGTGGGGACCACAAAATCCATGTCAGTGCTTACTCACCACTTGGTGGGCCAGGGAATGCATGGGGCTCAACACTTGTGGTGGACAGCCCGATCATCCAGTCCATTGCTCTCAAGCACAGAGCAACTCCAGCCCAGGTTGCACTACGATGGGGATTATCAAAGGGGTCAAGTGTGATTGTGAAGAGCTTTAATCAAGAAAGGATGAAGGAGAACATCGGAGCCGTTGATCTGAAATTGGACGATGAGGATTTGATGGAGATAGAGAAGTTGGGGGAGAGGAAGATCATGAGGGGAGAGTCTCTAGTGAATCAAACTACAAGTCCATACAAGACACTTGAAGATTTATGGGATGATGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

215

Amino Acids

24.24

Weight (kDa)

5.52

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 1 - 186 2.3e-33 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62420
fragaria_vesca FvH4_7g27320
malus_domestica MD07G1252700.v1.1
prunus_persica Prupe.2G276200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374161
rosa_laevigata RLG00000026757
rosa_multiflora Rmu_ssc0000007.1_g000043 Rmu_ssc0000450.1_g000003
rosa_roxburghii Rroxscaffold_4G00283670
rosa_rugosa Rorug01G0381200
rosa_samantha Rh1AG392200 Rh1BG356200 Rh1CG369100 Rh1DG386700
rosa_wichuraiana Rw1G034350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 329
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 2 cut(s) 209, 642
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 145, 329
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 3 cut(s) 52, 197, 623
AjnI CCWGG 4 cut(s) 116, 138, 334, 417
AluBI AGCT 3 cut(s) 202, 230, 471
AluI AGCT 3 cut(s) 202, 230, 471
Alw26I GTCTC 2 cut(s) 104, 588
AlwI GGATC 1 cut(s) 93
AoxI GGCC 2 cut(s) 38, 332
ApoI RAATTY 2 cut(s) 209, 642
ArsI GACNNNNNNTTYG 4 cut(s) 291, 323, 589, 621
AspS9I GGNCC 3 cut(s) 10, 292, 332
AsuHPI GGTGA 1 cut(s) 312
AvaII GGWCC 2 cut(s) 10, 292
BalI TGGCCA 1 cut(s) 40
BanII GRGCYC 1 cut(s) 353
BccI CCATC 2 cut(s) 426, 532
BceAI ACGGC 1 cut(s) 491
BciT130I CCWGG 4 cut(s) 118, 140, 336, 419
BcoDI GTCTC 2 cut(s) 104, 588
BfaI CTAG 2 cut(s) 101, 587
Bme1390I CCNGG 4 cut(s) 118, 140, 336, 419
Bme18I GGWCC 2 cut(s) 10, 292
BmgT120I GGNCC 3 cut(s) 10, 292, 332
BmiI GGNNCC 2 cut(s) 293, 505
BmrFI CCNGG 4 cut(s) 118, 140, 336, 419
BmsI GCATC 2 cut(s) 58, 237
BpmI CTGGAG 2 cut(s) 210, 396
BpuEI CTTGAG 2 cut(s) 166, 380
BsaJI CCNNGG 4 cut(s) 56, 117, 335, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 329
Bse1I ACTGG 3 cut(s) 41, 41, 382
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 4 cut(s) 118, 140, 336, 419
BseDI CCNNGG 4 cut(s) 56, 117, 335, 417
BseGI GGATG 4 cut(s) 12, 378, 492, 640
BseLI CCNNNNNNNGG 2 cut(s) 145, 329
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 3 cut(s) 41, 41, 382
BshFI GGCC 2 cut(s) 40, 334
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 145, 329
BsmAI GTCTC 2 cut(s) 104, 588
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 2 cut(s) 40, 334
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 4 cut(s) 85, 375, 511, 567
Bsp19I CCATGG 1 cut(s) 56
BspANI GGCC 2 cut(s) 40, 334
BspCNI CTCAG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 2 cut(s) 293, 505
BspPI GGATC 1 cut(s) 93
BspQI GCTCTTC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 3 cut(s) 41, 41, 382
BssECI CCNNGG 4 cut(s) 56, 117, 335, 417
BssMI GATC 4 cut(s) 85, 375, 511, 567
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 4 cut(s) 118, 140, 336, 419
Bst6I CTCTTC 1 cut(s) 461
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 4 cut(s) 12, 378, 492, 640
BstKTI GATC 4 cut(s) 88, 378, 514, 570
BstMAI GTCTC 2 cut(s) 104, 588
BstMBI GATC 4 cut(s) 85, 375, 511, 567
BstMWI GCNNNNNNNGC 3 cut(s) 68, 413, 422
BstNI CCWGG 4 cut(s) 118, 140, 336, 419
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 4 cut(s) 116, 138, 334, 417
BsuRI GGCC 2 cut(s) 40, 334
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 4 cut(s) 12, 378, 492, 640
BtsIMutI CAGTG 3 cut(s) 34, 48, 316
Cac8I GCNNGC 1 cut(s) 267
CciI TCATGA 1 cut(s) 570
Cfr13I GGNCC 3 cut(s) 10, 292, 332
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 5 cut(s) 22, 57, 305, 345, 571
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 275
DpnI GATC 4 cut(s) 87, 377, 513, 569
DpnII GATC 4 cut(s) 85, 375, 511, 567
DraIII CACNNNGTG 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 10, 292
EcoRII CCWGG 4 cut(s) 116, 138, 334, 417
EcoT14I CCWWGG 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 5 cut(s) 25, 60, 308, 348, 574
FaiI YATR 9 cut(s) 23, 58, 107, 128, 306, 346, 572, 610, 631
FaqI GGGAC 1 cut(s) 305
FatI CATG 5 cut(s) 21, 56, 304, 344, 570
FokI GGATG 3 cut(s) 19, 365, 499
FriOI GRGCYC 1 cut(s) 353
FspBI CTAG 2 cut(s) 101, 587
GsuI CTGGAG 2 cut(s) 210, 396
HaeIII GGCC 2 cut(s) 40, 334
Hin1II CATG 5 cut(s) 25, 60, 308, 348, 574
HinfI GANTC 2 cut(s) 581, 592
HphI GGTGA 1 cut(s) 312
Hpy166II GTNNAC 2 cut(s) 34, 367
Hpy188I TCNGA 4 cut(s) 67, 78, 503, 516
Hpy188III TCNNGA 2 cut(s) 479, 571
Hpy8I GTNNAC 2 cut(s) 34, 367
HpyAV CCTTC 1 cut(s) 484
HpyCH4V TGCA 3 cut(s) 250, 344, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 413, 422
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 5 cut(s) 25, 60, 308, 348, 574
Kzo9I GATC 4 cut(s) 85, 375, 511, 567
LguI GCTCTTC 1 cut(s) 461
LmnI GCTCC 1 cut(s) 503
LweI GCATC 2 cut(s) 58, 237
MaeI CTAG 2 cut(s) 101, 587
MalI GATC 4 cut(s) 87, 377, 513, 569
MboI GATC 4 cut(s) 85, 375, 511, 567
MboII GAAGA 3 cut(s) 478, 577, 635
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 6 cut(s) 47, 175, 192, 209, 518, 642
MluNI TGGCCA 1 cut(s) 40
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 8 cut(s) 76, 88, 226, 234, 255, 523, 555, 567
Mox20I TGGCCA 1 cut(s) 40
Mph1103I ATGCAT 1 cut(s) 346
MscI TGGCCA 1 cut(s) 40
MseI TTAA 2 cut(s) 234, 474
MslI CAYNNNNRTG 2 cut(s) 309, 430
Msp20I TGGCCA 1 cut(s) 40
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 4 cut(s) 118, 140, 336, 419
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 4 cut(s) 118, 140, 336, 419
MwoI GCNNNNNNNGC 3 cut(s) 68, 413, 422
NcoI CCATGG 1 cut(s) 56
NdeII GATC 4 cut(s) 85, 375, 511, 567
NlaIII CATG 5 cut(s) 25, 60, 308, 348, 574
NlaIV GGNNCC 2 cut(s) 293, 505
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 570
PciI ACATGT 1 cut(s) 21
PciSI GCTCTTC 1 cut(s) 461
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 592
PflMI CCANNNNNTGG 1 cut(s) 329
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PscI ACATGT 1 cut(s) 21
Psp6I CCWGG 4 cut(s) 116, 138, 334, 417
PspGI CCWGG 4 cut(s) 116, 138, 334, 417
PspN4I GGNNCC 2 cut(s) 293, 505
PspPI GGNCC 3 cut(s) 10, 292, 332
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 2 cut(s) 309, 430
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 2 cut(s) 234, 474
Sau3AI GATC 4 cut(s) 85, 375, 511, 567
Sau96I GGNCC 3 cut(s) 10, 292, 332
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 4 cut(s) 118, 140, 336, 419
SduI GDGCHC 1 cut(s) 353
SetI ASST 8 cut(s) 119, 161, 204, 232, 243, 285, 423, 473
SfaNI GCATC 2 cut(s) 58, 237
SinI GGWCC 2 cut(s) 10, 292
SmiMI CAYNNNNRTG 2 cut(s) 309, 430
SmlI CTYRAG 2 cut(s) 181, 395
SmoI CTYRAG 2 cut(s) 181, 395
Sse9I AATT 6 cut(s) 47, 175, 192, 209, 518, 642
SspMI CTAG 2 cut(s) 101, 587
StyD4I CCNGG 4 cut(s) 116, 138, 334, 417
StyI CCWWGG 1 cut(s) 56
TasI AATT 6 cut(s) 47, 175, 192, 209, 518, 642
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 592
Tru1I TTAA 2 cut(s) 234, 474
Tru9I TTAA 2 cut(s) 234, 474
TscAI CASTG 3 cut(s) 41, 48, 316
TspDTI ATGAA 1 cut(s) 503
TspRI CASTG 3 cut(s) 41, 48, 316
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 10, 292
XapI RAATTY 2 cut(s) 209, 642
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XspI CTAG 2 cut(s) 101, 587
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.