FvH4_7g27320

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016155
Physical Location & Seq
Reverse (-)
20451628 .. 20453875
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27320.t1

Sequence Viewer

Length: 948 bp
ATGAGGAGCAACCAAGTTCGCTTGAATTGTGGTGTAACAATGCCTCTCATTGGGTTAGGCACTTATTCCTTCGAAAATGATAAGCACACTACTGAACTAGCAGTTCATATGGCCCTTCAGATGGGTTACAGGAATTTTGACACAGCCAAGATATACGGTTCTGAGGCTGCCCTTGGAAACGCTTTAACAGAGGCAATGCAAGATGGAACTGTAGAAAGGGAAGACATCTTTGTTACCTCTAAGTTATGGGGCAGTCATCACCATGACCCTGTTTCAGCTCTGAGACAAACTCTAAAGACTATGGGGATGGACCATTTGGACCTGTACTTAGTTCACTGGCCAGTGAAATTGAAGCCATGGGCATTTGATGCCATTCCAAAAGAAGATCACTTTGAGGAACTAGACCTGAAAACTACCTGGCTTGGTATGGAGAAGTGCCTGGAGTTGGGATTGTGTAGGTCTATTGGTATAAGCAATTTCTCAAGCAAAAAACTTGATCAGCTTTTGGAATTTGCCTCTGTTCCTCCGGCTGTTAATCAGGTGGAGATGCACCCAATGTGGAGGCAAGCAAGACTTAGAAGGGTGTGTGGGGACCACAAAATCCATGTCAGTGCTTACTCACCACTTGGTGGGCCAGGGAATGCTTGGGGTTCAACACTTGTGGTGGACAGCCCAATCATCCAGTCCATTGCGCACAAGCACAATGCAACTCCAGCCCAGGTTGCACTACAATGGGGATTATCAAAAGGGTCAAGTGTGATTGTGAAGAGCTTTAACCAAGAAAGAATGAAGGAAAACATTGGCGCCGTTGATCTGAAATTGGACGATGACGATTTGATGGAGATAGAGAAGTTGGAGGAGAGGAAGATCATGAGGGGAGAGTCTCTAATCAATCAAACTACAAGTCCATACAAGACACTTGAAGATTTATGGGATGATGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

316

Amino Acids

35.49

Weight (kDa)

5.71

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 17 - 286 5.9e-50 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62420
fragaria_vesca FvH4_7g27320
malus_domestica MD07G1252700.v1.1
prunus_persica Prupe.2G276200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374161
rosa_laevigata RLG00000026757
rosa_multiflora Rmu_ssc0000007.1_g000043 Rmu_ssc0000450.1_g000003
rosa_roxburghii Rroxscaffold_4G00283670
rosa_rugosa Rorug01G0381200
rosa_samantha Rh1AG392200 Rh1BG356200 Rh1CG369100 Rh1DG386700
rosa_wichuraiana Rw1G034350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 693
AccB1I GGYRCC 1 cut(s) 803
AccB7I CCANNNNNTGG 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 3 cut(s) 133, 509, 942
AcuI CTGAAG 1 cut(s) 101
AcyI GRCGYC 1 cut(s) 804
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 4 cut(s) 50, 121, 445, 629
AgsI TTSAA 4 cut(s) 25, 352, 654, 923
AjnI CCWGG 4 cut(s) 416, 438, 634, 717
AluBI AGCT 3 cut(s) 278, 502, 771
AluI AGCT 3 cut(s) 278, 502, 771
Alw26I GTCTC 2 cut(s) 277, 888
AoxI GGCC 3 cut(s) 111, 338, 632
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 3 cut(s) 133, 509, 942
ArsI GACNNNNNNTTYG 4 cut(s) 591, 623, 889, 921
AspLEI GCGC 2 cut(s) 694, 806
AspS9I GGNCC 5 cut(s) 112, 310, 319, 592, 632
AsuHPI GGTGA 2 cut(s) 251, 612
AsuII TTCGAA 1 cut(s) 72
AvaII GGWCC 3 cut(s) 310, 319, 592
BalI TGGCCA 1 cut(s) 340
BanI GGYRCC 1 cut(s) 803
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 154
BccI CCATC 4 cut(s) 115, 197, 301, 832
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 4 cut(s) 418, 440, 636, 719
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 277, 888
BfaI CTAG 2 cut(s) 98, 401
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 807
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 4 cut(s) 418, 440, 636, 719
Bme18I GGWCC 3 cut(s) 310, 319, 592
BmgT120I GGNCC 5 cut(s) 112, 310, 319, 592, 632
BmiI GGNNCC 2 cut(s) 593, 805
BmrFI CCNGG 4 cut(s) 418, 440, 636, 719
BmsI GCATC 2 cut(s) 358, 537
BpiI GAAGAC 1 cut(s) 228
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 2 cut(s) 461, 696
Bpu14I TTCGAA 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 466
BsaHI GRCGYC 1 cut(s) 804
BsaJI CCNNGG 4 cut(s) 172, 356, 635, 717
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 121, 445, 629
Bse1I ACTGG 3 cut(s) 341, 341, 682
Bse3DI GCAATG 2 cut(s) 201, 687
BseBI CCWGG 4 cut(s) 418, 440, 636, 719
BseDI CCNNGG 4 cut(s) 172, 356, 635, 717
BseGI GGATG 3 cut(s) 312, 678, 940
BseLI CCNNNNNNNGG 4 cut(s) 50, 121, 445, 629
BseMI GCAATG 2 cut(s) 201, 687
BseMII CTCAG 2 cut(s) 153, 272
BseNI ACTGG 3 cut(s) 341, 341, 682
BseRI GAGGAG 2 cut(s) 19, 872
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 3 cut(s) 113, 340, 634
BshNI GGYRCC 1 cut(s) 803
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 4 cut(s) 50, 121, 445, 629
BsmAI GTCTC 2 cut(s) 277, 888
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 3 cut(s) 113, 340, 634
Bsp119I TTCGAA 1 cut(s) 72
Bsp143I GATC 4 cut(s) 385, 496, 811, 867
Bsp19I CCATGG 1 cut(s) 356
BspANI GGCC 3 cut(s) 113, 340, 634
BspCNI CTCAG 2 cut(s) 154, 273
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 2 cut(s) 593, 805
BspQI GCTCTTC 1 cut(s) 761
BspT104I TTCGAA 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 803
BsrDI GCAATG 2 cut(s) 201, 687
BsrI ACTGG 3 cut(s) 341, 341, 682
BssECI CCNNGG 4 cut(s) 172, 356, 635, 717
BssMI GATC 4 cut(s) 385, 496, 811, 867
BssNI GRCGYC 1 cut(s) 804
BssT1I CCWWGG 2 cut(s) 172, 356
Bst2UI CCWGG 4 cut(s) 418, 440, 636, 719
Bst4CI ACNGT 2 cut(s) 158, 211
Bst6I CTCTTC 1 cut(s) 761
BstACI GRCGYC 1 cut(s) 804
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 5 cut(s) 162, 240, 281, 328, 575
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 3 cut(s) 312, 678, 940
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 2 cut(s) 694, 806
BstKTI GATC 4 cut(s) 388, 499, 814, 870
BstMAI GTCTC 2 cut(s) 277, 888
BstMBI GATC 4 cut(s) 385, 496, 811, 867
BstMWI GCNNNNNNNGC 3 cut(s) 368, 713, 722
BstNI CCWGG 4 cut(s) 418, 440, 636, 719
BstSCI CCNGG 4 cut(s) 416, 438, 634, 717
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 3 cut(s) 113, 340, 634
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 3 cut(s) 312, 678, 940
BtsIMutI CAGTG 3 cut(s) 334, 348, 616
Cac8I GCNNGC 1 cut(s) 567
CciI TCATGA 1 cut(s) 870
CfoI GCGC 2 cut(s) 694, 806
Cfr13I GGNCC 5 cut(s) 112, 310, 319, 592, 632
Csp6I GTAC 1 cut(s) 325
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 4 cut(s) 263, 357, 605, 871
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 5 cut(s) 162, 240, 281, 328, 575
DinI GGCGCC 1 cut(s) 805
DpnI GATC 4 cut(s) 387, 498, 813, 869
DpnII GATC 4 cut(s) 385, 496, 811, 867
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Eco130I CCWWGG 2 cut(s) 172, 356
Eco47I GGWCC 3 cut(s) 310, 319, 592
Eco57I CTGAAG 1 cut(s) 101
EcoRII CCWGG 4 cut(s) 416, 438, 634, 717
EcoT14I CCWWGG 2 cut(s) 172, 356
EgeI GGCGCC 1 cut(s) 805
EheI GGCGCC 1 cut(s) 805
ErhI CCWWGG 2 cut(s) 172, 356
FaeI CATG 4 cut(s) 266, 360, 608, 874
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 262, 356, 604, 870
FauNDI CATATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 319, 665
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 98, 401
FspI TGCGCA 1 cut(s) 693
GlaI GCGC 2 cut(s) 693, 805
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 2 cut(s) 461, 696
HaeII RGCGCY 1 cut(s) 807
HaeIII GGCC 3 cut(s) 113, 340, 634
HapII CCGG 1 cut(s) 527
HhaI GCGC 2 cut(s) 694, 806
Hin1I GRCGYC 1 cut(s) 804
Hin1II CATG 4 cut(s) 266, 360, 608, 874
Hin6I GCGC 2 cut(s) 692, 804
HinP1I GCGC 2 cut(s) 692, 804
HinfI GANTC 1 cut(s) 881
HpaII CCGG 1 cut(s) 527
HphI GGTGA 2 cut(s) 251, 612
Hpy166II GTNNAC 2 cut(s) 334, 667
Hpy188I TCNGA 4 cut(s) 120, 163, 282, 816
Hpy188III TCNNGA 1 cut(s) 871
Hpy8I GTNNAC 2 cut(s) 334, 667
HpyAV CCTTC 4 cut(s) 79, 125, 573, 784
HpyCH4III ACNGT 2 cut(s) 158, 211
HpyCH4V TGCA 4 cut(s) 199, 550, 707, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 713, 722
HpyF3I CTNAG 5 cut(s) 162, 240, 281, 328, 575
Hsp92I GRCGYC 1 cut(s) 804
Hsp92II CATG 4 cut(s) 266, 360, 608, 874
HspAI GCGC 2 cut(s) 692, 804
KasI GGCGCC 1 cut(s) 803
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 4 cut(s) 385, 496, 811, 867
LguI GCTCTTC 1 cut(s) 761
LmnI GCTCC 1 cut(s) 6
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 2 cut(s) 358, 537
MaeI CTAG 2 cut(s) 98, 401
MaeIII GTNAC 3 cut(s) 34, 125, 232
MalI GATC 4 cut(s) 387, 498, 813, 869
MboI GATC 4 cut(s) 385, 496, 811, 867
MboII GAAGA 5 cut(s) 233, 395, 778, 877, 935
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 7 cut(s) 25, 133, 347, 475, 509, 818, 942
MluNI TGGCCA 1 cut(s) 340
Mly113I GGCGCC 1 cut(s) 804
MlyI GAGTC 1 cut(s) 890
MmeI TCCRAC 1 cut(s) 834
Mox20I TGGCCA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 340
MseI TTAA 3 cut(s) 185, 534, 774
MslI CAYNNNNRTG 3 cut(s) 261, 609, 730
Msp20I TGGCCA 1 cut(s) 340
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 4 cut(s) 418, 440, 636, 719
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 4 cut(s) 418, 440, 636, 719
MwoI GCNNNNNNNGC 3 cut(s) 368, 713, 722
NarI GGCGCC 1 cut(s) 804
NcoI CCATGG 1 cut(s) 356
NdeI CATATG 1 cut(s) 108
NdeII GATC 4 cut(s) 385, 496, 811, 867
NlaIII CATG 4 cut(s) 266, 360, 608, 874
NlaIV GGNNCC 2 cut(s) 593, 805
NsbI TGCGCA 1 cut(s) 693
NspV TTCGAA 1 cut(s) 72
PagI TCATGA 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 761
PctI GAATGC 1 cut(s) 646
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 889
PluTI GGCGCC 1 cut(s) 807
PpsI GAGTC 1 cut(s) 889
Psp6I CCWGG 4 cut(s) 416, 438, 634, 717
PspGI CCWGG 4 cut(s) 416, 438, 634, 717
PspN4I GGNNCC 2 cut(s) 593, 805
PspPI GGNCC 5 cut(s) 112, 310, 319, 592, 632
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 3 cut(s) 261, 609, 730
SapI GCTCTTC 1 cut(s) 761
SaqAI TTAA 3 cut(s) 185, 534, 774
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 4 cut(s) 385, 496, 811, 867
Sau96I GGNCC 5 cut(s) 112, 310, 319, 592, 632
SchI GAGTC 1 cut(s) 890
ScrFI CCNGG 4 cut(s) 418, 440, 636, 719
SfaNI GCATC 2 cut(s) 358, 537
SfcI CTRYAG 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 805
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 3 cut(s) 310, 319, 592
SmiMI CAYNNNNRTG 3 cut(s) 261, 609, 730
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
Sse9I AATT 7 cut(s) 25, 133, 347, 475, 509, 818, 942
SspDI GGCGCC 1 cut(s) 803
SspMI CTAG 2 cut(s) 98, 401
StyD4I CCNGG 4 cut(s) 416, 438, 634, 717
StyI CCWWGG 2 cut(s) 172, 356
TaaI ACNGT 2 cut(s) 158, 211
TaqI TCGA 1 cut(s) 72
TasI AATT 7 cut(s) 25, 133, 347, 475, 509, 818, 942
TatI WGTACW 1 cut(s) 324
Tru1I TTAA 3 cut(s) 185, 534, 774
Tru9I TTAA 3 cut(s) 185, 534, 774
TscAI CASTG 3 cut(s) 341, 348, 616
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 95, 803
TspRI CASTG 3 cut(s) 341, 348, 616
Van91I CCANNNNNTGG 1 cut(s) 629
VpaK11BI GGWCC 3 cut(s) 310, 319, 592
XapI RAATTY 3 cut(s) 133, 509, 942
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XspI CTAG 2 cut(s) 98, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.