Rroxscaffold_4G00283670

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016155
Physical Location & Seq
Forward (+)
5543684 .. 5545795
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283670.1

Sequence Viewer

Length: 948 bp
ATGAGGAGCAACCAAGTTCGCTTGAATTGTGGTGTAACAATGCCTCTCATTGGGTTAGGCACTTACTCCTTCGAAAATGATAGGAACACTACTGAACTAGCAGTTCATATGGCCCTCAAGATGGGCTACAGGCACTTTGACACAGCCATGATATATGGTTCTGAGGCTGCCCTGGGAAACGCTTTAACAGAGGCAATTCCAGACGGGAATGTAGAAAGAGAAAACATTTTTGTTACATCTAAGTTATGGGGTAGTCATCACCATGACCCTGTTTCAGCTCTGAGACAAACTCTAAAGACAATGGGGATGGACCATTTGGACATGTACTTGGTTCACTGGCCGGTGAAATTGAAGCCATGGGCTTTTGATGCCATTCCAAAAGAGGAACACTTTGAGGAACTAGACATAGAGACAACCTGGGCTGGTATGGAGAAGTGCCTGGACTTGGGATTGTGTAGGTCTATTGGTGTAAGCAATTTCTCAAGCAAAAAAATTGAACAGCTTTTGGAATTTGCCTCTGTGCCTCCAGCTGTTAATCAGGTGGAGATGCACCCAATGTGGAGGCAAGCAAGACTGAGAAGGGTGTGTGGGGACCACAAAATCCATGTCAGTGCTTACTCACCACTTGGTGGGCCAGGGAATGCATGGGGCTCAACACTTGTGGTGGACAGCCCAATCATCCAGTCCATTGCTCTCAAGCACAGAGCAACTCCAGCCCAGGTTGCGCTACGATGGGGATTATCAAAGGGGTCAAGTGTGATTGTGAAAAGCTTTAATCAAGAAAGGATGAAGGAGAACATCGGAGTCGTTGATCTGAAATTGGACGATGAGGATTTGATGGAGATAGAGAAGTTGGGGGAGAGGAAGATCATGAGGGGAGAGTCTCTAGTGAATCAAACTACAAGTCCATACAAGACACTTGAAGATTTATGGGATGATGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

315

Amino Acids

35.47

Weight (kDa)

5.85

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 17 - 285 3.6e-52 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62420
fragaria_vesca FvH4_7g27320
malus_domestica MD07G1252700.v1.1
prunus_persica Prupe.2G276200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374161
rosa_laevigata RLG00000026757
rosa_multiflora Rmu_ssc0000007.1_g000043 Rmu_ssc0000450.1_g000003
rosa_roxburghii Rroxscaffold_4G00283670
rosa_rugosa Rorug01G0381200
rosa_samantha Rh1AG392200 Rh1BG356200 Rh1CG369100 Rh1DG386700
rosa_wichuraiana Rw1G034350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 2 cut(s) 509, 942
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 4 cut(s) 50, 121, 445, 629
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 4 cut(s) 25, 352, 497, 923
AjnI CCWGG 5 cut(s) 171, 416, 438, 634, 717
AluBI AGCT 4 cut(s) 278, 502, 530, 771
AluI AGCT 4 cut(s) 278, 502, 530, 771
Alw26I GTCTC 3 cut(s) 277, 404, 888
AoxI GGCC 3 cut(s) 111, 338, 632
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 2 cut(s) 509, 942
ArsI GACNNNNNNTTYG 4 cut(s) 591, 623, 889, 921
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 4 cut(s) 112, 310, 592, 632
AsuHPI GGTGA 3 cut(s) 251, 355, 612
AsuII TTCGAA 1 cut(s) 72
AvaII GGWCC 2 cut(s) 310, 592
BanII GRGCYC 1 cut(s) 653
BbvI GCAGC 1 cut(s) 154
BccI CCATC 4 cut(s) 115, 301, 726, 832
BciT130I CCWGG 5 cut(s) 173, 418, 440, 636, 719
BcoDI GTCTC 3 cut(s) 277, 404, 888
BfaI CTAG 3 cut(s) 98, 401, 887
BfmI CTRYAG 1 cut(s) 127
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 5 cut(s) 173, 418, 440, 636, 719
Bme18I GGWCC 2 cut(s) 310, 592
BmgT120I GGNCC 4 cut(s) 112, 310, 592, 632
BmiI GGNNCC 1 cut(s) 593
BmrFI CCNGG 5 cut(s) 173, 418, 440, 636, 719
BmsI GCATC 2 cut(s) 358, 537
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 2 cut(s) 510, 696
Bpu14I TTCGAA 1 cut(s) 72
BpuEI CTTGAG 3 cut(s) 101, 466, 680
BsaJI CCNNGG 6 cut(s) 171, 172, 356, 417, 635, 717
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 121, 445, 629
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 2 cut(s) 341, 682
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 5 cut(s) 173, 418, 440, 636, 719
BseDI CCNNGG 6 cut(s) 171, 172, 356, 417, 635, 717
BseGI GGATG 4 cut(s) 312, 678, 792, 940
BseLI CCNNNNNNNGG 4 cut(s) 50, 121, 445, 629
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 3 cut(s) 153, 272, 566
BseNI ACTGG 2 cut(s) 341, 682
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 3 cut(s) 113, 340, 634
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 4 cut(s) 50, 121, 445, 629
BsmAI GTCTC 3 cut(s) 277, 404, 888
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 3 cut(s) 113, 340, 634
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 2 cut(s) 811, 867
Bsp19I CCATGG 1 cut(s) 356
BspANI GGCC 3 cut(s) 113, 340, 634
BspCNI CTCAG 3 cut(s) 154, 273, 567
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 2 cut(s) 341, 682
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 6 cut(s) 171, 172, 356, 417, 635, 717
BssMI GATC 2 cut(s) 811, 867
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 5 cut(s) 173, 418, 440, 636, 719
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 4 cut(s) 162, 240, 281, 575
BstDSI CCRYGG 1 cut(s) 356
BstF5I GGATG 4 cut(s) 312, 678, 792, 940
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 2 cut(s) 814, 870
BstMAI GTCTC 3 cut(s) 277, 404, 888
BstMBI GATC 2 cut(s) 811, 867
BstMWI GCNNNNNNNGC 3 cut(s) 368, 713, 722
BstNI CCWGG 5 cut(s) 173, 418, 440, 636, 719
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 5 cut(s) 171, 416, 438, 634, 717
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 113, 340, 634
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 4 cut(s) 312, 678, 792, 940
BtsIMutI CAGTG 2 cut(s) 334, 616
Cac8I GCNNGC 1 cut(s) 567
CciI TCATGA 1 cut(s) 870
CfoI GCGC 1 cut(s) 727
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 4 cut(s) 112, 310, 592, 632
Csp6I GTAC 1 cut(s) 325
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 7 cut(s) 148, 263, 322, 357, 605, 645, 871
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 4 cut(s) 162, 240, 281, 575
DpnI GATC 2 cut(s) 813, 869
DpnII GATC 2 cut(s) 811, 867
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 338
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 653
Eco47I GGWCC 2 cut(s) 310, 592
EcoRII CCWGG 5 cut(s) 171, 416, 438, 634, 717
EcoT14I CCWWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 653
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 7 cut(s) 151, 266, 325, 360, 608, 648, 874
FaqI GGGAC 1 cut(s) 605
FatI CATG 7 cut(s) 147, 262, 321, 356, 604, 644, 870
FauNDI CATATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 3 cut(s) 319, 665, 799
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 3 cut(s) 98, 401, 887
GlaI GCGC 1 cut(s) 726
GluI GCNGC 1 cut(s) 168
GsuI CTGGAG 2 cut(s) 510, 696
HaeIII GGCC 3 cut(s) 113, 340, 634
HapII CCGG 1 cut(s) 341
HhaI GCGC 1 cut(s) 727
Hin1II CATG 7 cut(s) 151, 266, 325, 360, 608, 648, 874
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HindIII AAGCTT 1 cut(s) 769
HinfI GANTC 3 cut(s) 804, 881, 892
HpaII CCGG 1 cut(s) 341
HphI GGTGA 3 cut(s) 251, 355, 612
Hpy166II GTNNAC 2 cut(s) 334, 667
Hpy188I TCNGA 4 cut(s) 163, 282, 803, 816
Hpy188III TCNNGA 4 cut(s) 118, 200, 779, 871
Hpy8I GTNNAC 2 cut(s) 334, 667
HpyAV CCTTC 3 cut(s) 79, 573, 784
HpyCH4V TGCA 2 cut(s) 550, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 713, 722
HpyF3I CTNAG 4 cut(s) 162, 240, 281, 575
Hsp92II CATG 7 cut(s) 151, 266, 325, 360, 608, 648, 874
HspAI GCGC 1 cut(s) 725
Kzo9I GATC 2 cut(s) 811, 867
LmnI GCTCC 1 cut(s) 6
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 2 cut(s) 358, 537
MaeI CTAG 3 cut(s) 98, 401, 887
MaeIII GTNAC 2 cut(s) 34, 232
MalI GATC 2 cut(s) 813, 869
MboI GATC 2 cut(s) 811, 867
MboII GAAGA 2 cut(s) 877, 935
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 8 cut(s) 25, 195, 347, 475, 492, 509, 818, 942
MlyI GAGTC 2 cut(s) 813, 890
Mph1103I ATGCAT 1 cut(s) 646
MseI TTAA 3 cut(s) 185, 534, 774
MslI CAYNNNNRTG 3 cut(s) 146, 261, 609
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 5 cut(s) 173, 418, 440, 636, 719
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 5 cut(s) 173, 418, 440, 636, 719
MwoI GCNNNNNNNGC 3 cut(s) 368, 713, 722
NcoI CCATGG 1 cut(s) 356
NdeI CATATG 1 cut(s) 108
NdeII GATC 2 cut(s) 811, 867
NlaIII CATG 7 cut(s) 151, 266, 325, 360, 608, 648, 874
NlaIV GGNNCC 1 cut(s) 593
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 1 cut(s) 325
NspV TTCGAA 1 cut(s) 72
PagI TCATGA 1 cut(s) 870
PasI CCCWGGG 1 cut(s) 172
PciI ACATGT 1 cut(s) 321
PctI GAATGC 1 cut(s) 646
PfeI GAWTC 1 cut(s) 892
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 2 cut(s) 812, 889
PpsI GAGTC 2 cut(s) 812, 889
PscI ACATGT 1 cut(s) 321
Psp6I CCWGG 5 cut(s) 171, 416, 438, 634, 717
PspGI CCWGG 5 cut(s) 171, 416, 438, 634, 717
PspN4I GGNNCC 1 cut(s) 593
PspPI GGNCC 4 cut(s) 112, 310, 592, 632
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 3 cut(s) 146, 261, 609
SaqAI TTAA 3 cut(s) 185, 534, 774
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 811, 867
Sau96I GGNCC 4 cut(s) 112, 310, 592, 632
SchI GAGTC 2 cut(s) 813, 890
ScrFI CCNGG 5 cut(s) 173, 418, 440, 636, 719
SduI GDGCHC 1 cut(s) 653
SetI ASST 8 cut(s) 280, 419, 461, 504, 532, 543, 723, 773
SfaNI GCATC 2 cut(s) 358, 537
SfcI CTRYAG 1 cut(s) 127
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 2 cut(s) 310, 592
SmiMI CAYNNNNRTG 3 cut(s) 146, 261, 609
SmlI CTYRAG 3 cut(s) 116, 481, 695
SmoI CTYRAG 3 cut(s) 116, 481, 695
Sse9I AATT 8 cut(s) 25, 195, 347, 475, 492, 509, 818, 942
SspMI CTAG 3 cut(s) 98, 401, 887
StyD4I CCNGG 5 cut(s) 171, 416, 438, 634, 717
StyI CCWWGG 1 cut(s) 356
TaqI TCGA 1 cut(s) 72
TasI AATT 8 cut(s) 25, 195, 347, 475, 492, 509, 818, 942
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 1 cut(s) 892
Tru1I TTAA 3 cut(s) 185, 534, 774
Tru9I TTAA 3 cut(s) 185, 534, 774
TscAI CASTG 2 cut(s) 341, 616
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 95, 803
TspRI CASTG 2 cut(s) 341, 616
Van91I CCANNNNNTGG 1 cut(s) 629
VpaK11BI GGWCC 2 cut(s) 310, 592
XapI RAATTY 2 cut(s) 509, 942
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XspI CTAG 3 cut(s) 98, 401, 887
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.