Rh1CG369100

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016155
Physical Location & Seq
Reverse (-)
63973238 .. 63973719
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG369100.1

Sequence Viewer

Length: 402 bp
ATGCACCCAACGTGGAGGCAAGGAAGACTGAGAAGGGTGTGTGGGGACCACAAAATCCATGTCAGTGCTTACTCACCACTTGGTGGACCAGGGAATGCATGGGGCTCAACACTTGTGGTGGACAGCCCGATCATCCAGTCCATTGCTCTCAAGCACAGAGCAACTCCAGCCCAGGTTGCACTACGATGGGGATTATCAAAGGGGTCAAGTGTGATTGTGAAGAGCTTTAATCAAGAAAGGATGAAGGAGAACATCGGAGCCGTTGATTTGAAATTGGACGATGAGGATTTGATGGAGATAGAGAAGTTGGGGGAGAGGAAGATCATGAGGGGAGAGTCTCTAGTGAATCAAACTACAAGTCCATACAAGACACTTGAAGATTTATGGGACGATGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

133

Amino Acids

14.92

Weight (kDa)

6.91

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 12 - 104 1.2e-11 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62420
fragaria_vesca FvH4_7g27320
malus_domestica MD07G1252700.v1.1
prunus_persica Prupe.2G276200_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0374161
rosa_laevigata RLG00000026757
rosa_multiflora Rmu_ssc0000007.1_g000043 Rmu_ssc0000450.1_g000003
rosa_roxburghii Rroxscaffold_4G00283670
rosa_rugosa Rorug01G0381200
rosa_samantha Rh1AG392200 Rh1BG356200 Rh1CG369100 Rh1DG386700
rosa_wichuraiana Rw1G034350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 83
AcsI RAATTY 1 cut(s) 396
AdeI CACNNNGTG 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 2 cut(s) 271, 377
AjnI CCWGG 2 cut(s) 88, 171
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 396
ArsI GACNNNNNNTTYG 4 cut(s) 45, 77, 343, 375
AspS9I GGNCC 2 cut(s) 46, 86
AsuHPI GGTGA 1 cut(s) 66
AvaII GGWCC 2 cut(s) 46, 86
BanII GRGCYC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 31
BccI CCATC 2 cut(s) 180, 286
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 90, 173
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 90, 173
Bme18I GGWCC 2 cut(s) 46, 86
BmgT120I GGNCC 2 cut(s) 46, 86
BmiI GGNNCC 2 cut(s) 47, 259
BmrFI CCNGG 2 cut(s) 90, 173
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 89, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 90, 173
BseDI CCNNGG 2 cut(s) 89, 171
BseGI GGATG 2 cut(s) 132, 246
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 129, 321
BspCNI CTCAG 1 cut(s) 21
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 47, 259
BspQI GCTCTTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 89, 171
BssMI GATC 2 cut(s) 129, 321
Bst2UI CCWGG 2 cut(s) 90, 173
Bst6I CTCTTC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 2 cut(s) 132, 246
BstKTI GATC 2 cut(s) 132, 324
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 2 cut(s) 129, 321
BstMWI GCNNNNNNNGC 2 cut(s) 167, 176
BstNI CCWGG 2 cut(s) 90, 173
BstSCI CCNGG 2 cut(s) 88, 171
BstV2I GAAGAC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 132, 246
BtsIMutI CAGTG 1 cut(s) 70
CciI TCATGA 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 46, 86
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 3 cut(s) 59, 99, 325
CviJI RGCY 5 cut(s) 105, 126, 170, 225, 260
CviKI_1 RGCY 5 cut(s) 105, 126, 170, 225, 260
DdeI CTNAG 1 cut(s) 29
DpnI GATC 2 cut(s) 131, 323
DpnII GATC 2 cut(s) 129, 321
DraIII CACNNNGTG 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 46, 86
EcoRII CCWGG 2 cut(s) 88, 171
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 3 cut(s) 62, 102, 328
FaiI YATR 5 cut(s) 60, 100, 326, 364, 385
FaqI GGGAC 1 cut(s) 59
FatI CATG 3 cut(s) 58, 98, 324
FokI GGATG 2 cut(s) 119, 253
FriOI GRGCYC 1 cut(s) 107
FspBI CTAG 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 150
Hin1II CATG 3 cut(s) 62, 102, 328
HinfI GANTC 2 cut(s) 335, 346
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 2 cut(s) 86, 121
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 2 cut(s) 233, 325
Hpy8I GTNNAC 2 cut(s) 86, 121
HpyAV CCTTC 2 cut(s) 27, 238
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 3 cut(s) 4, 98, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 176
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 3 cut(s) 62, 102, 328
Kzo9I GATC 2 cut(s) 129, 321
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 6 cut(s) 75, 102, 149, 158, 180, 185
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 11
MalI GATC 2 cut(s) 131, 323
MboI GATC 2 cut(s) 129, 321
MboII GAAGA 4 cut(s) 36, 232, 331, 389
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 2 cut(s) 272, 396
MlyI GAGTC 1 cut(s) 344
MnlI CCTC 4 cut(s) 9, 277, 309, 321
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 2 cut(s) 63, 184
MspR9I CCNGG 2 cut(s) 90, 173
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 2 cut(s) 90, 173
MwoI GCNNNNNNNGC 2 cut(s) 167, 176
NdeII GATC 2 cut(s) 129, 321
NlaIII CATG 3 cut(s) 62, 102, 328
NlaIV GGNNCC 2 cut(s) 47, 259
NsiI ATGCAT 1 cut(s) 100
PagI TCATGA 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 215
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 346
PflMI CCANNNNNTGG 1 cut(s) 83
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 88, 171
PspGI CCWGG 2 cut(s) 88, 171
PspN4I GGNNCC 2 cut(s) 47, 259
PspPI GGNCC 2 cut(s) 46, 86
RseI CAYNNNNRTG 2 cut(s) 63, 184
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 2 cut(s) 129, 321
Sau96I GGNCC 2 cut(s) 46, 86
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 90, 173
SduI GDGCHC 1 cut(s) 107
SetI ASST 3 cut(s) 14, 177, 227
SinI GGWCC 2 cut(s) 46, 86
SmiMI CAYNNNNRTG 2 cut(s) 63, 184
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 272, 396
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 88, 171
TaiI ACGT 1 cut(s) 14
TasI AATT 2 cut(s) 272, 396
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 83
VpaK11BI GGWCC 2 cut(s) 46, 86
XapI RAATTY 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 96
XspI CTAG 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.