AT5G62840
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012122
Physical Location & Seq
Reverse (-)
25228139 .. 25229738
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62840.2

Sequence Viewer

Length: 894 bp
ATGTTATCATCATCACCGGCGGTCACCACCGCCTCACACTTACATCCTCCTCCGTCGCCGGAAACCTACCAAATTCCTCTGAATTTACTTTCCTCGCCGCATATTACCCGCCGAGACCTTTTCAAAACTCTCTCCGTATGTATTGCCACACCATCACTCTCCGTCTCCATCGCCGCACCAGCTAACGCACGCGGTCTCTTTCAAATGCCGCCTCTCCGGCTCTCTAATCGTTATTACCTTGTGAGAGCTGGGGAATCAGATTACGAAAGCTTAGGGATAATCAACACAAACCCGGTTGCCAAAACATCGGTAGATAGCGGATTATCAGAGAAAGGTAAGAAGCAGACTCTGAGAGCTGCGTTACAGTTAAAAGCAATGGGAGCTTGTGACCGAAACTGTTGGCTCTGGCCTTCCATAACACAGAGAGCTTATCAGGCTGCTGAAATCATCGCCGCCATCAATGGAATTAGTCGCAGCTATATAGTTCCGGAGTATAGCTTCCTTGATGCTCGTGGTTTAGGAGCTTACGAAGGCAAGAAGCTTGAATCTATATCAGAAGTGTATGCATTAGACTCAATATCGATGAAGACAAAACCTCCTCCTATAAGCGACGGTACCCCCAACGAGAGTGTATCAGATGTATTTGTGCGTGTGACGCAACTCATGTCTATTCTCGAGACTCAATACTCAGAAGACACAATCGTGATTGTTTCGCCTGATTCAGACAACTTATCGGTGTTACAAGCTGGTATCCAAGGACTCGACCTTCGAAGGCACTCGGAGTTGTATTTTGGACCAGGAGAAGTAAGATTGTTGGATGCAAACAGCATTCCAGTGTATAAGCAACCTGCTTCTGCCGTATATAAGTGTAAGAAACCACCAAACTGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

297

Amino Acids

32.36

Weight (kDa)

7.61

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 14 - 206 1.2e-14 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62840 AT5G62840
fragaria_vesca FvH4_5g05200 FvH4_5g05200 FvH4_5g05200
malus_domestica MD14G1182500.v1.1
prunus_persica Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1
pyrus_communis pycom14g15160
rosa_chinensis RchiOBHm_Chr7g0193711
rosa_laevigata RLG00000004249
rosa_roxburghii Rroxscaffold_3G00261880
rosa_rugosa Rorug07G0011400
rosa_samantha Rh7AG138300 Rh7BG138500 Rh7CG142100 Rh7DG139600
rosa_wichuraiana Rw7G011780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 856
Acc65I GGTACC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 9 cut(s) 20, 30, 98, 109, 174, 192, 209, 318, 453
AcsI RAATTY 2 cut(s) 72, 82
AfaI GTAC 1 cut(s) 616
AgsI TTSAA 3 cut(s) 124, 203, 545
AjnI CCWGG 1 cut(s) 796
AleI CACNNNNGTG 1 cut(s) 701
Alw26I GTCTC 4 cut(s) 108, 169, 200, 671
AlwNI CAGNNNCTG 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 674
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 3 cut(s) 356, 437, 474
ApoI RAATTY 2 cut(s) 72, 82
ArsI GACNNNNNNTTYG 2 cut(s) 750, 782
Asp718I GGTACC 1 cut(s) 614
AspS9I GGNCC 1 cut(s) 794
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 2 cut(s) 6, 16
AsuII TTCGAA 1 cut(s) 769
AvaI CYCGRG 1 cut(s) 674
AvaII GGWCC 1 cut(s) 794
BanI GGYRCC 1 cut(s) 614
BauI CACGAG 1 cut(s) 510
BbsI GAAGAC 2 cut(s) 593, 699
BbvI GCAGC 3 cut(s) 343, 424, 486
BccI CCATC 3 cut(s) 160, 176, 464
BceAI ACGGC 1 cut(s) 842
BciT130I CCWGG 1 cut(s) 798
BciVI GTATCC 1 cut(s) 761
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 4 cut(s) 108, 169, 200, 671
BfuAI ACCTGC 1 cut(s) 856
BfuI GTATCC 1 cut(s) 761
BglI GCCNNNNNGGC 1 cut(s) 217
BisI GCNGC 7 cut(s) 98, 174, 209, 357, 438, 453, 475
BlsI GCNGC 7 cut(s) 99, 175, 210, 358, 439, 454, 476
Bme1390I CCNGG 2 cut(s) 293, 798
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 2 cut(s) 293, 798
BmsI GCATC 2 cut(s) 496, 808
BpiI GAAGAC 2 cut(s) 593, 699
Bpu10I CCTNAGC 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 769
BpuMI CCSGG 1 cut(s) 293
Bsa29I ATCGAT 1 cut(s) 581
BsaI GGTCTC 2 cut(s) 108, 200
BsaJI CCNNGG 1 cut(s) 754
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 833
Bse3DI GCAATG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 1 cut(s) 798
BseCI ATCGAT 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 2 cut(s) 43, 823
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 341, 702
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 2 cut(s) 39, 588
BseXI GCAGC 3 cut(s) 343, 424, 486
BseYI CCCAGC 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 1 cut(s) 409
BshNI GGYRCC 1 cut(s) 614
BshVI ATCGAT 1 cut(s) 581
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 5 cut(s) 17, 59, 217, 293, 488
BsmAI GTCTC 4 cut(s) 108, 169, 200, 671
BsmBI CGTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 1 cut(s) 409
Bso31I GGTCTC 2 cut(s) 108, 200
BsoBI CYCGRG 1 cut(s) 674
Bsp119I TTCGAA 1 cut(s) 769
Bsp13I TCCGGA 1 cut(s) 487
BspACI CCGC 9 cut(s) 20, 30, 98, 109, 174, 192, 209, 318, 453
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 2 cut(s) 342, 701
BspDI ATCGAT 1 cut(s) 581
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 856
BspT104I TTCGAA 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 614
BspTNI GGTCTC 2 cut(s) 108, 200
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 833
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 754
BssSI CACGAG 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 754
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 4 cut(s) 366, 398, 614, 887
BstBI TTCGAA 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 271, 350, 688
BstEII GGTNACC 1 cut(s) 22
BstF5I GGATG 2 cut(s) 43, 823
BstFNI CGCG 1 cut(s) 192
BstMAI GTCTC 4 cut(s) 108, 169, 200, 671
BstMWI GCNNNNNNNGC 5 cut(s) 179, 217, 380, 434, 655
BstNI CCWGG 1 cut(s) 798
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 291, 796
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 343, 424, 486
BstV2I GAAGAC 2 cut(s) 593, 699
Bsu15I ATCGAT 1 cut(s) 581
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 1 cut(s) 409
BsuTUI ATCGAT 1 cut(s) 581
BtgZI GCGATG 2 cut(s) 154, 433
BtsCI GGATG 2 cut(s) 43, 823
BtsIMutI CAGTG 1 cut(s) 840
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 349
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 794
ClaI ATCGAT 1 cut(s) 581
CseI GACGC 1 cut(s) 664
Csp6I GTAC 1 cut(s) 615
CviAII CATG 1 cut(s) 664
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 3 cut(s) 271, 350, 688
Eco130I CCWWGG 1 cut(s) 754
Eco31I GGTCTC 2 cut(s) 108, 200
Eco47I GGWCC 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 674
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 796
EcoT14I CCWWGG 1 cut(s) 754
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 754
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 667
FatI CATG 1 cut(s) 663
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 7 cut(s) 98, 174, 209, 357, 438, 453, 475
FokI GGATG 2 cut(s) 30, 830
Fsp4HI GCNGC 7 cut(s) 98, 174, 209, 357, 438, 453, 475
GluI GCNGC 7 cut(s) 98, 174, 209, 357, 438, 453, 475
GsaI CCCAGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 409
HapII CCGG 5 cut(s) 17, 59, 217, 293, 488
HgaI GACGC 1 cut(s) 664
Hin1II CATG 1 cut(s) 667
HindIII AAGCTT 2 cut(s) 268, 539
HinfI GANTC 7 cut(s) 254, 346, 545, 572, 679, 719, 759
HpaII CCGG 5 cut(s) 17, 59, 217, 293, 488
HphI GGTGA 2 cut(s) 6, 16
Hpy188I TCNGA 9 cut(s) 81, 259, 328, 351, 556, 637, 691, 724, 781
Hpy188III TCNNGA 4 cut(s) 488, 674, 676, 703
Hpy99I CGWCG 2 cut(s) 58, 614
HpyAV CCTTC 4 cut(s) 420, 524, 765, 776
HpyCH4III ACNGT 4 cut(s) 366, 398, 614, 887
HpyCH4V TGCA 2 cut(s) 566, 821
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 217, 380, 434, 655
HpyF3I CTNAG 3 cut(s) 271, 350, 688
Hsp92II CATG 1 cut(s) 667
Kpn2I TCCGGA 1 cut(s) 487
KpnI GGTACC 1 cut(s) 618
LmnI GCTCC 2 cut(s) 380, 521
Lsp1109I GCAGC 3 cut(s) 343, 424, 486
LweI GCATC 2 cut(s) 496, 808
MaeIII GTNAC 6 cut(s) 22, 360, 386, 652, 738, 887
MboII GAAGA 2 cut(s) 598, 704
MluCI AATT 3 cut(s) 72, 82, 465
MlyI GAGTC 4 cut(s) 340, 566, 673, 753
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 8 cut(s) 43, 57, 60, 87, 103, 222, 606, 609
Mph1103I ATGCAT 1 cut(s) 568
MroI TCCGGA 1 cut(s) 487
MseI TTAA 1 cut(s) 368
MslI CAYNNNNRTG 2 cut(s) 701, 833
MspI CCGG 5 cut(s) 17, 59, 217, 293, 488
MspR9I CCNGG 2 cut(s) 293, 798
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 1 cut(s) 798
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 5 cut(s) 179, 217, 380, 434, 655
NciI CCSGG 1 cut(s) 293
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 1 cut(s) 616
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 4 cut(s) 22, 386, 652, 887
NsiI ATGCAT 1 cut(s) 568
NspV TTCGAA 1 cut(s) 769
OliI CACNNNNGTG 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 674
PctI GAATGC 1 cut(s) 828
PfeI GAWTC 3 cut(s) 254, 545, 719
PkrI GCNGC 7 cut(s) 99, 175, 210, 358, 439, 454, 476
PleI GAGTC 4 cut(s) 340, 566, 673, 753
PpsI GAGTC 4 cut(s) 340, 566, 673, 753
Psp6I CCWGG 1 cut(s) 796
PspEI GGTNACC 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 1 cut(s) 616
PspPI GGNCC 1 cut(s) 794
PstNI CAGNNNCTG 1 cut(s) 349
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
RseI CAYNNNNRTG 2 cut(s) 701, 833
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 7 cut(s) 98, 174, 209, 357, 438, 453, 475
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 4 cut(s) 340, 566, 673, 753
ScrFI CCNGG 2 cut(s) 293, 798
SfaNI GCATC 2 cut(s) 496, 808
Sfr274I CTCGAG 1 cut(s) 674
SfuI TTCGAA 1 cut(s) 769
SgrAI CRCCGGYG 1 cut(s) 16
SinI GGWCC 1 cut(s) 794
SlaI CTCGAG 1 cut(s) 674
SmiMI CAYNNNNRTG 2 cut(s) 701, 833
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 3 cut(s) 72, 82, 465
SsiI CCGC 9 cut(s) 20, 30, 98, 109, 174, 192, 209, 318, 453
StyD4I CCNGG 2 cut(s) 291, 796
StyI CCWWGG 1 cut(s) 754
TaaI ACNGT 4 cut(s) 366, 398, 614, 887
TaqI TCGA 4 cut(s) 581, 675, 762, 769
TaqII GACCGA 1 cut(s) 405
TasI AATT 3 cut(s) 72, 82, 465
TauI GCSGC 4 cut(s) 100, 176, 211, 455
TfiI GAWTC 3 cut(s) 254, 545, 719
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 1 cut(s) 840
TseFI GTSAC 4 cut(s) 22, 386, 652, 887
TseI GCWGC 3 cut(s) 356, 437, 474
Tsp45I GTSAC 4 cut(s) 22, 386, 652, 887
TspDTI ATGAA 1 cut(s) 599
TspGWI ACGGA 3 cut(s) 42, 124, 151
TspRI CASTG 1 cut(s) 840
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 2 cut(s) 72, 82
XhoI CTCGAG 1 cut(s) 674
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.