Rw7G011780
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012122
Physical Location & Seq
Reverse (-)
11094564 .. 11096934
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011780.1

Sequence Viewer

Length: 747 bp
ATGTTGTGCCACATAATCAAACGGCATTCCGTTTGGTCCATCAGTTGGGATTTGGAGGGAGATGAAGTGAAAGGAGAAGAGCAAAACCAAACCCAGAACCCACAAGACTCAGCCCACAAACACCCGCCAAAAATGATAGTAACATCTTCTTCCTCCCTTGCAAACCCTCCTCATCTTCCTCTTCCAACTCCATCAACAACCTCCAAAAACCCTAACAATGCATTCCTACCCATCAGCCGCCGCAACCTCCTTGCTGCCCTCACCCTCACCCTCACCGCAGCCCCTTTTGCCCTCGACCCCATGTCCGTACAAGAGATAGCTTTTGCTCGTGGCCTCTTCCAGATGCCCCCAGTTAGACTCAGCAACAGGTATTTTCTGGTGAGGGCTGGGGAGTCTGAATATGAGAGCTGGGGGGTGATTAACACGAACCCGGTTGCGAAAACTTCTGTTGATAGCGGGTTGTCAGAGAGAGGGAAGAAGCAGGCGGTGAGGGCAGCTTTCGACTTGAAGGAAATGGGGGCTTGTGACACTAGCTGTTGGATTTGGCCTTCTATCACTCAGAGAGCTTACCAGACCGCAGAGATCATTGCATCGGTTAACGGGGTCACTCGAAGTAACATTGTCCCAGAGTATAGCTTTCTAGATGCCCGTGGCTTGGGAGCTTATGAAGGAAAGAACCTAGAAGCTGTTTCAGAAGTAGCATTTCCATCTGCTTTCACTTTTTTGAACTTTCGGATTGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

248

Amino Acids

27.34

Weight (kDa)

6.53

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 125 - 232 5.5e-09 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62840 AT5G62840
fragaria_vesca FvH4_5g05200 FvH4_5g05200 FvH4_5g05200
malus_domestica MD14G1182500.v1.1
prunus_persica Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1
pyrus_communis pycom14g15160
rosa_chinensis RchiOBHm_Chr7g0193711
rosa_laevigata RLG00000004249
rosa_roxburghii Rroxscaffold_3G00261880
rosa_rugosa Rorug07G0011400
rosa_samantha Rh7AG138300 Rh7BG138500 Rh7CG142100 Rh7DG139600
rosa_wichuraiana Rw7G011780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 45
AciI CCGC 7 cut(s) 125, 238, 241, 276, 456, 485, 576
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 45, 655
AgsI TTSAA 3 cut(s) 508, 727, 740
AhdI GACNNNNNGTC 1 cut(s) 301
AluBI AGCT 8 cut(s) 320, 408, 497, 534, 566, 636, 662, 686
AluI AGCT 8 cut(s) 320, 408, 497, 534, 566, 636, 662, 686
AoxI GGCC 2 cut(s) 331, 545
ApeKI GCWGC 3 cut(s) 254, 278, 494
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 6 cut(s) 253, 259, 265, 391, 427, 499
AvaII GGWCC 1 cut(s) 36
BauI CACGAG 1 cut(s) 327
BbvI GCAGC 3 cut(s) 241, 290, 506
BccI CCATC 4 cut(s) 47, 199, 239, 715
BceAI ACGGC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 431
BfaI CTAG 3 cut(s) 531, 641, 680
BisI GCNGC 5 cut(s) 238, 241, 255, 279, 495
BlsI GCNGC 5 cut(s) 239, 242, 256, 280, 496
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 36
BmeRI GACNNNNNGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 431
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 3 cut(s) 333, 599, 634
BmuI ACTGGG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 649
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 655
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 649
BseLI CCNNNNNNNGG 2 cut(s) 45, 655
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 3 cut(s) 123, 373, 572
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 241, 290, 506
BseYI CCCAGC 2 cut(s) 386, 408
BshFI GGCC 2 cut(s) 333, 547
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 2 cut(s) 45, 655
BsmFI GGGAC 1 cut(s) 608
BsmI GAATGC 2 cut(s) 25, 221
BsnI GGCC 2 cut(s) 333, 547
Bsp143I GATC 1 cut(s) 582
BspACI CCGC 7 cut(s) 125, 238, 241, 276, 456, 485, 576
BspANI GGCC 2 cut(s) 333, 547
BspCNI CTCAG 3 cut(s) 122, 372, 571
BspQI GCTCTTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 585
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 1 cut(s) 582
BssSI CACGAG 1 cut(s) 327
Bst2BI CACGAG 1 cut(s) 327
Bst6I CTCTTC 3 cut(s) 72, 186, 341
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 3 cut(s) 109, 359, 558
BstDSI CCRYGG 1 cut(s) 649
BstKTI GATC 1 cut(s) 585
BstMBI GATC 1 cut(s) 582
BstMWI GCNNNNNNNGC 2 cut(s) 287, 491
BstSCI CCNGG 1 cut(s) 429
BstV1I GCAGC 3 cut(s) 241, 290, 506
BsuRI GGCC 2 cut(s) 333, 547
BtgI CCRYGG 1 cut(s) 649
Cac8I GCNNGC 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 308
CviAII CATG 1 cut(s) 301
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 3 cut(s) 109, 359, 558
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
DriI GACNNNNNGTC 1 cut(s) 301
Eam1104I CTCTTC 3 cut(s) 72, 186, 341
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 3 cut(s) 72, 186, 341
Eco47I GGWCC 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 1 cut(s) 304
FaiI YATR 5 cut(s) 14, 302, 402, 633, 666
FaqI GGGAC 1 cut(s) 608
FatI CATG 1 cut(s) 300
FauI CCCGC 2 cut(s) 132, 449
Fnu4HI GCNGC 5 cut(s) 238, 241, 255, 279, 495
Fsp4HI GCNGC 5 cut(s) 238, 241, 255, 279, 495
FspBI CTAG 3 cut(s) 531, 641, 680
GluI GCNGC 5 cut(s) 238, 241, 255, 279, 495
GsaI CCCAGC 2 cut(s) 390, 412
HaeIII GGCC 2 cut(s) 333, 547
HapII CCGG 1 cut(s) 431
Hin1II CATG 1 cut(s) 304
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 4 cut(s) 107, 357, 392, 740
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 1 cut(s) 431
HphI GGTGA 6 cut(s) 253, 259, 265, 391, 427, 499
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 5 cut(s) 397, 466, 561, 694, 735
Hpy188III TCNNGA 3 cut(s) 340, 641, 744
Hpy8I GTNNAC 1 cut(s) 598
HpyAV CCTTC 3 cut(s) 502, 558, 662
HpyCH4V TGCA 3 cut(s) 161, 221, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 491
HpyF3I CTNAG 3 cut(s) 109, 359, 558
Hsp92II CATG 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 1 cut(s) 582
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 659
Lsp1109I GCAGC 3 cut(s) 241, 290, 506
LweI GCATC 3 cut(s) 333, 599, 634
MaeI CTAG 3 cut(s) 531, 641, 680
MaeIII GTNAC 4 cut(s) 139, 524, 604, 614
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MboII GAAGA 7 cut(s) 89, 138, 141, 167, 173, 328, 487
MlyI GAGTC 3 cut(s) 101, 351, 401
MmeI TCCRAC 2 cut(s) 209, 518
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 2 cut(s) 420, 597
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 431
Mva1269I GAATGC 2 cut(s) 25, 221
MwoI GCNNNNNNNGC 2 cut(s) 287, 491
NciI CCSGG 1 cut(s) 431
NdeII GATC 1 cut(s) 582
NlaIII CATG 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 524, 604
NsiI ATGCAT 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 72
PctI GAATGC 2 cut(s) 25, 221
PfeI GAWTC 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 5 cut(s) 239, 242, 256, 280, 496
PleI GAGTC 3 cut(s) 101, 351, 400
PpsI GAGTC 3 cut(s) 101, 351, 400
PspFI CCCAGC 2 cut(s) 386, 408
PspPI GGNCC 1 cut(s) 36
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 420, 597
SatI GCNGC 5 cut(s) 238, 241, 255, 279, 495
Sau3AI GATC 1 cut(s) 582
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 3 cut(s) 101, 351, 401
ScrFI CCNGG 1 cut(s) 431
SfaNI GCATC 3 cut(s) 333, 599, 634
SinI GGWCC 1 cut(s) 36
SsiI CCGC 7 cut(s) 125, 238, 241, 276, 456, 485, 576
SspMI CTAG 3 cut(s) 531, 641, 680
StyD4I CCNGG 1 cut(s) 429
TaqI TCGA 3 cut(s) 294, 501, 610
TauI GCSGC 2 cut(s) 240, 243
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 2 cut(s) 420, 597
Tru9I TTAA 2 cut(s) 420, 597
TseFI GTSAC 2 cut(s) 524, 604
TseI GCWGC 3 cut(s) 254, 278, 494
Tsp45I GTSAC 2 cut(s) 524, 604
TspDTI ATGAA 2 cut(s) 78, 681
TspGWI ACGGA 2 cut(s) 19, 295
Van91I CCANNNNNTGG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 36
XbaI TCTAGA 1 cut(s) 640
XspI CTAG 3 cut(s) 531, 641, 680
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.