RchiOBHm_Chr7g0193711
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012122
Physical Location & Seq
Reverse (-)
11974970 .. 11977101
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17322

Sequence Viewer

Length: 1026 bp
ATGTTGTGCCACATAATCAAACGGCATTCCGTTTGGTCCATCAGTTGGGATTTGGAGGGAGATGAGGTCAAAGGAGAAGAGCAAAACCAAACCCAGAGCCCAGAAGACTCAGCCCACAAACACCCGCCAAAAATGATAGTAACATCTTCTTCCTCCCTTGCAAACCCCCCTCATCTTCCTCTTCCAACTCCATCAACAACCTCCAAAAACCCTAACAATGCATTCCTACCCATCAGCCGCCGCAACCTCCTTGCTGCCCTCACCCTCACCGCAGCCCCTTTTGCCCTCGACCCCATGTCCGTACAAGAGATAGCTTTTGCTCGTGGCCTCTTCCAGATGCCCCCAGTTAGACTCAGCAACAGGTATTTTCTGGTGAGGGCTGGGGAGTCTGAATATGAGAGCTGGGGGGTGATTAACACGAACCCGGTTGCGAAAACTTCTGTTGATAGCGGGTTGTCAGAGAGAGGGAAGAAGCAGGCGGTGAGGGTAGCTTTCGACTTGAAGGAAATGGGGGCTTGTGACACAAGCTGTTGGATTTGGCCTTCTATCACTCAGAGAGCTTACCAGACTGCAGAGATCATTGCATTGGTTAACGGGGTCACTCGAAGTAACATTGTCCCAGAGTATAGCTTTCTAGATGCCCGTGGCTTGGGAGCTTATGAAGGAAAGAACCTAGAAGCTGTTTCAGAAGTATATGCATCTGATACTATTTCTCCAAGAATCAAGCCTCCTCCAATTGATGATGGAACCCCGAATGAGAGTGTCTCCGATGTGTTTGTTCGGGTGGTACAGCTCATGTCCATACTCGAGACTCAATACTCTGAAGACACAGTAATAATTGTCTCGCCAGATTCAGACAATTTAACAATCCTACAAGCTGGTATAGTTGGACTTGACTTGCGAAGGCACAGAGAACTTTCTTTTGCACCAGGAGAAGTCAGATTTGTTGATACCGATAGTGTACCTGCTTACAAGCAACCCGCATCAGCTATATATAAGTGTTTGAATCCACCAAATTGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

341

Amino Acids

37.48

Weight (kDa)

5.36

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 123 - 317 4.1e-16 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62840 AT5G62840
fragaria_vesca FvH4_5g05200 FvH4_5g05200 FvH4_5g05200
malus_domestica MD14G1182500.v1.1
prunus_persica Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1
pyrus_communis pycom14g15160
rosa_chinensis RchiOBHm_Chr7g0193711
rosa_laevigata RLG00000004249
rosa_roxburghii Rroxscaffold_3G00261880
rosa_rugosa Rorug07G0011400
rosa_samantha Rh7AG138300 Rh7BG138500 Rh7CG142100 Rh7DG139600
rosa_wichuraiana Rw7G011780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 973
AccB7I CCANNNNNTGG 1 cut(s) 45
AciI CCGC 7 cut(s) 125, 238, 241, 270, 450, 479, 981
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 4 cut(s) 303, 789, 963, 1021
AfiI CCNNNNNNNGG 2 cut(s) 45, 649
AgsI TTSAA 2 cut(s) 502, 1006
AhdI GACNNNNNGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 928
Alw26I GTCTC 3 cut(s) 769, 803, 847
Ama87I CYCGRG 1 cut(s) 806
AoxI GGCC 2 cut(s) 325, 539
ApeKI GCWGC 2 cut(s) 254, 272
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 5 cut(s) 253, 259, 385, 421, 493
AvaI CYCGRG 1 cut(s) 806
AvaII GGWCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 101
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 2 cut(s) 111, 831
BbvI GCAGC 2 cut(s) 241, 284
BccI CCATC 4 cut(s) 47, 199, 239, 737
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 930
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 3 cut(s) 769, 803, 847
BfaI CTAG 2 cut(s) 635, 674
BfmI CTRYAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 973
BisI GCNGC 4 cut(s) 238, 241, 255, 273
BlsI GCNGC 4 cut(s) 239, 242, 256, 274
Bme1390I CCNGG 2 cut(s) 425, 930
Bme18I GGWCC 1 cut(s) 36
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 806
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 748
BmrFI CCNGG 2 cut(s) 425, 930
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 4 cut(s) 327, 628, 707, 992
BmuI ACTGGG 1 cut(s) 338
BpiI GAAGAC 2 cut(s) 111, 831
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpuMI CCSGG 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 643
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 697, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 649
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 1 cut(s) 930
BseDI CCNNGG 1 cut(s) 643
BseLI CCNNNNNNNGG 2 cut(s) 45, 649
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 3 cut(s) 123, 367, 566
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 720
BseXI GCAGC 2 cut(s) 241, 284
BseYI CCCAGC 2 cut(s) 380, 402
BshFI GGCC 2 cut(s) 327, 541
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 45, 649
BsmAI GTCTC 3 cut(s) 769, 803, 847
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 2 cut(s) 25, 221
BsnI GGCC 2 cut(s) 327, 541
BsoBI CYCGRG 1 cut(s) 806
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 576
BspACI CCGC 7 cut(s) 125, 238, 241, 270, 450, 479, 981
BspANI GGCC 2 cut(s) 327, 541
BspCNI CTCAG 3 cut(s) 122, 366, 565
BspLI GGNNCC 1 cut(s) 748
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 973
BspQI GCTCTTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 1 cut(s) 576
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 930
Bst4CI ACNGT 1 cut(s) 832
Bst6I CTCTTC 3 cut(s) 72, 186, 335
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 109, 353, 552
BstDSI CCRYGG 1 cut(s) 643
BstKTI GATC 1 cut(s) 579
BstMAI GTCTC 3 cut(s) 769, 803, 847
BstMBI GATC 1 cut(s) 576
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 930
BstSCI CCNGG 2 cut(s) 423, 928
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 241, 284
BstV2I GAAGAC 2 cut(s) 111, 831
BsuRI GGCC 2 cut(s) 327, 541
BtgI CCRYGG 1 cut(s) 643
BveI ACCTGC 1 cut(s) 973
Cac8I GCNNGC 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 4 cut(s) 302, 788, 962, 1020
CviAII CATG 2 cut(s) 295, 796
CviQI GTAC 4 cut(s) 302, 788, 962, 1020
DdeI CTNAG 3 cut(s) 109, 353, 552
DpnI GATC 1 cut(s) 578
DpnII GATC 1 cut(s) 576
DriI GACNNNNNGTC 1 cut(s) 295
Eam1104I CTCTTC 3 cut(s) 72, 186, 335
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 3 cut(s) 72, 186, 335
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 928
EcoT22I ATGCAT 2 cut(s) 223, 700
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 2 cut(s) 298, 799
FaqI GGGAC 1 cut(s) 602
FatI CATG 2 cut(s) 294, 795
FauI CCCGC 3 cut(s) 132, 443, 988
Fnu4HI GCNGC 4 cut(s) 238, 241, 255, 273
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 4 cut(s) 238, 241, 255, 273
FspBI CTAG 2 cut(s) 635, 674
GluI GCNGC 4 cut(s) 238, 241, 255, 273
GsaI CCCAGC 2 cut(s) 384, 406
HaeIII GGCC 2 cut(s) 327, 541
HapII CCGG 1 cut(s) 425
Hin1II CATG 2 cut(s) 298, 799
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 7 cut(s) 107, 351, 386, 720, 811, 851, 1006
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 1 cut(s) 425
HphI GGTGA 5 cut(s) 253, 259, 385, 421, 493
Hpy166II GTNNAC 2 cut(s) 592, 962
Hpy188I TCNGA 9 cut(s) 391, 460, 555, 688, 703, 769, 823, 856, 941
Hpy188III TCNNGA 3 cut(s) 334, 635, 808
Hpy8I GTNNAC 2 cut(s) 592, 962
HpyAV CCTTC 4 cut(s) 496, 552, 656, 897
HpyCH4III ACNGT 1 cut(s) 832
HpyCH4V TGCA 6 cut(s) 161, 221, 572, 584, 698, 926
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 109, 353, 552
Hsp92II CATG 2 cut(s) 298, 799
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 1 cut(s) 576
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 2 cut(s) 241, 284
LweI GCATC 4 cut(s) 327, 628, 707, 992
MaeI CTAG 2 cut(s) 635, 674
MaeIII GTNAC 4 cut(s) 139, 518, 598, 608
MalI GATC 1 cut(s) 578
MboI GATC 1 cut(s) 576
MboII GAAGA 9 cut(s) 89, 116, 138, 141, 167, 173, 322, 481, 836
MfeI CAATTG 1 cut(s) 735
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 4 cut(s) 735, 837, 859, 1015
MlyI GAGTC 4 cut(s) 101, 345, 395, 805
MmeI TCCRAC 3 cut(s) 209, 512, 868
Mph1103I ATGCAT 2 cut(s) 223, 700
MseI TTAA 3 cut(s) 414, 591, 863
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 2 cut(s) 425, 930
MunI CAATTG 1 cut(s) 735
Mva1269I GAATGC 2 cut(s) 25, 221
MvaI CCWGG 1 cut(s) 930
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 425
NdeII GATC 1 cut(s) 576
NlaIII CATG 2 cut(s) 298, 799
NlaIV GGNNCC 1 cut(s) 748
NmuCI GTSAC 2 cut(s) 518, 598
NsiI ATGCAT 2 cut(s) 223, 700
PaeR7I CTCGAG 1 cut(s) 806
PciSI GCTCTTC 1 cut(s) 72
PctI GAATGC 2 cut(s) 25, 221
PfeI GAWTC 3 cut(s) 720, 851, 1006
PflMI CCANNNNNTGG 1 cut(s) 45
PkrI GCNGC 4 cut(s) 239, 242, 256, 274
PleI GAGTC 4 cut(s) 101, 345, 394, 805
PpsI GAGTC 4 cut(s) 101, 345, 394, 805
Psp6I CCWGG 1 cut(s) 928
PspFI CCCAGC 2 cut(s) 380, 402
PspGI CCWGG 1 cut(s) 928
PspN4I GGNNCC 1 cut(s) 748
PspPI GGNCC 1 cut(s) 36
PstI CTGCAG 1 cut(s) 574
RsaI GTAC 4 cut(s) 303, 789, 963, 1021
RsaNI GTAC 4 cut(s) 302, 788, 962, 1020
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 3 cut(s) 414, 591, 863
SatI GCNGC 4 cut(s) 238, 241, 255, 273
Sau3AI GATC 1 cut(s) 576
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 4 cut(s) 101, 345, 395, 805
ScrFI CCNGG 2 cut(s) 425, 930
SduI GDGCHC 1 cut(s) 101
SfaNI GCATC 4 cut(s) 327, 628, 707, 992
SfcI CTRYAG 1 cut(s) 570
Sfr274I CTCGAG 1 cut(s) 806
SinI GGWCC 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
Sse9I AATT 4 cut(s) 735, 837, 859, 1015
SsiI CCGC 7 cut(s) 125, 238, 241, 270, 450, 479, 981
SspMI CTAG 2 cut(s) 635, 674
StyD4I CCNGG 2 cut(s) 423, 928
TaaI ACNGT 1 cut(s) 832
TaqI TCGA 4 cut(s) 288, 495, 604, 807
TasI AATT 4 cut(s) 735, 837, 859, 1015
TauI GCSGC 2 cut(s) 240, 243
TfiI GAWTC 3 cut(s) 720, 851, 1006
Tru1I TTAA 3 cut(s) 414, 591, 863
Tru9I TTAA 3 cut(s) 414, 591, 863
TseFI GTSAC 2 cut(s) 518, 598
TseI GCWGC 2 cut(s) 254, 272
Tsp45I GTSAC 2 cut(s) 518, 598
TspDTI ATGAA 1 cut(s) 675
TspGWI ACGGA 2 cut(s) 19, 289
Van91I CCANNNNNTGG 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 36
XbaI TCTAGA 1 cut(s) 634
XhoI CTCGAG 1 cut(s) 806
XspI CTAG 2 cut(s) 635, 674
Zsp2I ATGCAT 2 cut(s) 223, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.