Rh7DG139600
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012122
Physical Location & Seq
Reverse (-)
11845532 .. 11847526
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG139600.1

Sequence Viewer

Length: 894 bp
ATGATAGTAACATCTTCTTCCTCCCTTGCAAACCCTCCTCATCTTCCTCTTCCAACTCCATCAACAACCTCCAAAAACCCTAACAATGCATTCCTACCCATCAGCCGCCGCAACCTCCTTGCTGCCCTCACCCTCACCGCAGCCCCTTTTGCCCTCGACCCCATGTCCGTACAAGAGATAGCTTTTGCTCGTGGCCTCTTCCAGATGCCCCCAGTTAGACTCAGCAACAGGTATTTTCTGGTGAGGGCTGGGGAGTCTGAATATGAGAGCTGGGGGGTGATTAACACGAACCCGGTTGCGAAAACTTCTGTTGATAGCGGGTTGTCAGAGAGAGGGAAGAAGCAGGCGGTGAGGGTAGCTTTCGACTTGAAGGAAATGGGGGCTTGTGACACAAGCTGTTGGATTTGGCCTTCTATCACTCAGAGAGCTTACCAGACTGCAGAGATCATTGCATTGGTTAACGGGGTCACTCGAAGTAACATTGTCCCAGAGTATAGCTTTCTAGATGCCCGTGGCTTGGGAGCTTATGAAGGAAAGAACCTAGAAGCTGTTTCAGAAGTATATGCATCTGATACTATTTCTCCAAGAATCAAGCCTCCTCCAATTGATGATGGAACCCCGAATGAGAGTGTCTCCGTTGTGTTTGTTCGGGTGGTACAGCTCATGTCCATACTCGAGACTCAATACTCTGAAGACACAGTAATAATTGTCTCGCCAGATTCAGACAATTTAACAATCCTACAAGCTGGTATAGTTGGACTTGACTTGCGAAGGCACAGAGAACTTTCTTTTGCACCAGGAGAAGTCAGATTTGTTGATACCAATAGTGTACCTGCTTACAAGCAACCTGCATCAGCTATATATAAGTGTTTGAATCCACCAAATTGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

297

Amino Acids

32.37

Weight (kDa)

5.55

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 79 - 272 3.7e-15 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62840 AT5G62840
fragaria_vesca FvH4_5g05200 FvH4_5g05200 FvH4_5g05200
malus_domestica MD14G1182500.v1.1
prunus_persica Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1
pyrus_communis pycom14g15160
rosa_chinensis RchiOBHm_Chr7g0193711
rosa_laevigata RLG00000004249
rosa_roxburghii Rroxscaffold_3G00261880
rosa_rugosa Rorug07G0011400
rosa_samantha Rh7AG138300 Rh7BG138500 Rh7CG142100 Rh7DG139600
rosa_wichuraiana Rw7G011780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 841, 856
AciI CCGC 5 cut(s) 106, 109, 138, 318, 347
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 4 cut(s) 171, 657, 831, 889
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 2 cut(s) 370, 874
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 796
Alw26I GTCTC 3 cut(s) 637, 671, 715
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 2 cut(s) 193, 407
ApeKI GCWGC 2 cut(s) 122, 140
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 5 cut(s) 121, 127, 253, 289, 361
AvaI CYCGRG 1 cut(s) 674
BauI CACGAG 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 699
BbvI GCAGC 2 cut(s) 109, 152
BccI CCATC 3 cut(s) 67, 107, 605
BciT130I CCWGG 1 cut(s) 798
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 3 cut(s) 637, 671, 715
BfaI CTAG 2 cut(s) 503, 542
BfmI CTRYAG 1 cut(s) 438
BfuAI ACCTGC 2 cut(s) 841, 856
BisI GCNGC 4 cut(s) 106, 109, 123, 141
BlsI GCNGC 4 cut(s) 107, 110, 124, 142
Bme1390I CCNGG 2 cut(s) 293, 798
BmeRI GACNNNNNGTC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 674
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 2 cut(s) 293, 798
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 4 cut(s) 195, 496, 575, 860
BmuI ACTGGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 699
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 511
BsaXI ACNNNNNCTCC 2 cut(s) 565, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 798
BseDI CCNNGG 1 cut(s) 511
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 2 cut(s) 235, 434
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 2 cut(s) 27, 588
BseXI GCAGC 2 cut(s) 109, 152
BseYI CCCAGC 2 cut(s) 248, 270
BshFI GGCC 2 cut(s) 195, 409
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 3 cut(s) 637, 671, 715
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 2 cut(s) 195, 409
BsoBI CYCGRG 1 cut(s) 674
Bsp143I GATC 1 cut(s) 444
BspACI CCGC 5 cut(s) 106, 109, 138, 318, 347
BspANI GGCC 2 cut(s) 195, 409
BspCNI CTCAG 2 cut(s) 234, 433
BspLI GGNNCC 1 cut(s) 616
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 2 cut(s) 841, 856
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 1 cut(s) 444
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 1 cut(s) 700
Bst6I CTCTTC 2 cut(s) 54, 203
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 221, 420
BstDSI CCRYGG 1 cut(s) 511
BstKTI GATC 1 cut(s) 447
BstMAI GTCTC 3 cut(s) 637, 671, 715
BstMBI GATC 1 cut(s) 444
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 798
BstSCI CCNGG 2 cut(s) 291, 796
BstSFI CTRYAG 1 cut(s) 438
BstV1I GCAGC 2 cut(s) 109, 152
BstV2I GAAGAC 1 cut(s) 699
BsuRI GGCC 2 cut(s) 195, 409
BtgI CCRYGG 1 cut(s) 511
BveI ACCTGC 2 cut(s) 841, 856
Cac8I GCNNGC 1 cut(s) 345
Csp6I GTAC 4 cut(s) 170, 656, 830, 888
CviAII CATG 2 cut(s) 163, 664
CviQI GTAC 4 cut(s) 170, 656, 830, 888
DdeI CTNAG 2 cut(s) 221, 420
DpnI GATC 1 cut(s) 446
DpnII GATC 1 cut(s) 444
DriI GACNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 54, 203
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 2 cut(s) 54, 203
Eco57I CTGAAG 1 cut(s) 711
Eco88I CYCGRG 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 796
EcoT22I ATGCAT 2 cut(s) 91, 568
FaeI CATG 2 cut(s) 166, 667
FaqI GGGAC 1 cut(s) 470
FatI CATG 2 cut(s) 162, 663
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 4 cut(s) 106, 109, 123, 141
Fsp4HI GCNGC 4 cut(s) 106, 109, 123, 141
FspBI CTAG 2 cut(s) 503, 542
GluI GCNGC 4 cut(s) 106, 109, 123, 141
GsaI CCCAGC 2 cut(s) 252, 274
HaeIII GGCC 2 cut(s) 195, 409
HapII CCGG 1 cut(s) 293
Hin1II CATG 2 cut(s) 166, 667
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 6 cut(s) 219, 254, 588, 679, 719, 874
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 1 cut(s) 293
HphI GGTGA 5 cut(s) 121, 127, 253, 289, 361
Hpy166II GTNNAC 2 cut(s) 460, 830
Hpy188I TCNGA 8 cut(s) 259, 328, 423, 556, 571, 691, 724, 809
Hpy188III TCNNGA 3 cut(s) 202, 503, 676
Hpy8I GTNNAC 2 cut(s) 460, 830
HpyAV CCTTC 4 cut(s) 364, 420, 524, 765
HpyCH4III ACNGT 1 cut(s) 700
HpyCH4V TGCA 7 cut(s) 29, 89, 440, 452, 566, 794, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 221, 420
Hsp92II CATG 2 cut(s) 166, 667
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 2 cut(s) 109, 152
LweI GCATC 4 cut(s) 195, 496, 575, 860
MaeI CTAG 2 cut(s) 503, 542
MaeIII GTNAC 4 cut(s) 7, 386, 466, 476
MalI GATC 1 cut(s) 446
MboI GATC 1 cut(s) 444
MboII GAAGA 7 cut(s) 6, 9, 35, 41, 190, 349, 704
MfeI CAATTG 1 cut(s) 603
MluCI AATT 4 cut(s) 603, 705, 727, 883
MlyI GAGTC 3 cut(s) 213, 263, 673
MmeI TCCRAC 3 cut(s) 77, 380, 736
Mph1103I ATGCAT 2 cut(s) 91, 568
MseI TTAA 3 cut(s) 282, 459, 731
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 293, 798
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 798
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 293
NdeII GATC 1 cut(s) 444
NlaIII CATG 2 cut(s) 166, 667
NlaIV GGNNCC 1 cut(s) 616
NmuCI GTSAC 2 cut(s) 386, 466
NsiI ATGCAT 2 cut(s) 91, 568
PaeR7I CTCGAG 1 cut(s) 674
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 588, 719, 874
PkrI GCNGC 4 cut(s) 107, 110, 124, 142
PleI GAGTC 3 cut(s) 213, 262, 673
PpsI GAGTC 3 cut(s) 213, 262, 673
Psp6I CCWGG 1 cut(s) 796
PspFI CCCAGC 2 cut(s) 248, 270
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 1 cut(s) 616
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 4 cut(s) 171, 657, 831, 889
RsaNI GTAC 4 cut(s) 170, 656, 830, 888
SaqAI TTAA 3 cut(s) 282, 459, 731
SatI GCNGC 4 cut(s) 106, 109, 123, 141
Sau3AI GATC 1 cut(s) 444
SchI GAGTC 3 cut(s) 213, 263, 673
ScrFI CCNGG 2 cut(s) 293, 798
SfaNI GCATC 4 cut(s) 195, 496, 575, 860
SfcI CTRYAG 1 cut(s) 438
Sfr274I CTCGAG 1 cut(s) 674
SlaI CTCGAG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 4 cut(s) 603, 705, 727, 883
SsiI CCGC 5 cut(s) 106, 109, 138, 318, 347
SspMI CTAG 2 cut(s) 503, 542
StyD4I CCNGG 2 cut(s) 291, 796
TaaI ACNGT 1 cut(s) 700
TaqI TCGA 4 cut(s) 156, 363, 472, 675
TasI AATT 4 cut(s) 603, 705, 727, 883
TauI GCSGC 2 cut(s) 108, 111
TfiI GAWTC 3 cut(s) 588, 719, 874
Tru1I TTAA 3 cut(s) 282, 459, 731
Tru9I TTAA 3 cut(s) 282, 459, 731
TseFI GTSAC 2 cut(s) 386, 466
TseI GCWGC 2 cut(s) 122, 140
Tsp45I GTSAC 2 cut(s) 386, 466
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 2 cut(s) 157, 625
XbaI TCTAGA 1 cut(s) 502
XhoI CTCGAG 1 cut(s) 674
XspI CTAG 2 cut(s) 503, 542
Zsp2I ATGCAT 2 cut(s) 91, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.