Rorug07G0011400
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012122
Physical Location & Seq
Forward (+)
945213 .. 947784
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0011400.1

Sequence Viewer

Length: 1095 bp
ATGGATGCTGCCAAAGTAGCCGAGCTGAACGAGTTCATCACTAAAGTCAAGTCAAACCCGTCAATCCTTCACTACCCTTCTCTTGCTTTCTTCAAGTCCTATCTCCAAAGTCTCGGTGCTCGAATCCCAACAGACCCAAAAATGGAAACTAAAGAACAGTTTGATGATGACATTGTTGAATCTGATATTGAGTTGGATGATGCTGATGTTGTGGAGCCTGATAATGATCCTCCACAACAGATGGGAGACCCATCAGTTGAAGTTACAGAAGAAATGCAGGATGCTGCGCAATTGGCGAAATCGAGAGCTATGGATGCTGTTTCTGAAGGTAAACTGGATGAGGCCATAGATCATATAACGGAAGCCATCATGTTGAATCCAACTTCAGCCATACTAAAAGCATCCAGAGCTAGTATCTTTGTCAAATTGAACAAACCAAATGCGGCAATTCGTGATGCTAATGCAGCTATAGAGATCAACCCGGACTCAGCAAAAGGATATAAAATAAGAGGAACTGCAAAGGCTATGTTGGGCCACTGGGAAGAAGCAGCAAGTGACCTGCATATAGCATCCAAACTAGATTATGATGAGGAGATTGGTTTGGTGCTTAAAAAGGTTGAACCTAATGCTCGAAAAATTGAAGAGCATCGCAAAAAATATCAACGGTTGCATAAAGAGAGGGAGATGAAAAGGGCTGAACATGAGAGACAGAGGCAAGCTGAAGCTCGAGAACGGGATGCTTTGTCTGCTCTTAAGGATGGGCAAGTTATTGGTATACATGCGGCCAGTGAACTTGAGACGAAATTGAATGCTGCTTCAAGGACATCGCGCCTTGCAATCCTGTACTTCACCGCGACATGGTGTGGTCCTTGCCGTATGATATCTCCAGTATATACAAGCTTAGCTGAAAAGTACCCAAAAGTAGTTTTCACGAAAATTGACATAGATGCAGCAAGAGATGTGGCTGCAAGCTGGAATATCAGCAGTGTTCCAGCCTTTTTCTTTGTAAGAAATGGCAAGGAGATTGACAAGGTTGTGGGTGCTGATAAAGCTGTGCTAGAAAAGAAGATTGCACAATATGCAGCCTCAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

364

Amino Acids

40.41

Weight (kDa)

5.55

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HipN PF18253 2 - 43 8.7e-18 Hsp70-interacting protein N N-terminal domain
Thioredoxin PF00085 275 - 358 6.4e-24 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62840 AT5G62840
fragaria_vesca FvH4_5g05200 FvH4_5g05200 FvH4_5g05200
malus_domestica MD14G1182500.v1.1
prunus_persica Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1
pyrus_communis pycom14g15160
rosa_chinensis RchiOBHm_Chr7g0193711
rosa_laevigata RLG00000004249
rosa_roxburghii Rroxscaffold_3G00261880
rosa_rugosa Rorug07G0011400
rosa_samantha Rh7AG138300 Rh7BG138500 Rh7CG142100 Rh7DG139600
rosa_wichuraiana Rw7G011780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 567
AccI GTMKAC 1 cut(s) 775
AccII CGCG 2 cut(s) 829, 854
AciI CCGC 3 cut(s) 443, 782, 852
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 783
AcuI CTGAAG 3 cut(s) 345, 369, 741
AfaI GTAC 2 cut(s) 845, 914
AfiI CCNNNNNNNGG 2 cut(s) 142, 858
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 9 cut(s) 94, 179, 260, 376, 430, 620, 641, 808, 819
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 4 cut(s) 116, 240, 700, 791
AlwI GGATC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 726
AoxI GGCC 3 cut(s) 342, 532, 783
ApeKI GCWGC 8 cut(s) 8, 284, 464, 548, 812, 950, 965, 1082
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 2 cut(s) 289, 831
AspS9I GGNCC 2 cut(s) 532, 866
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 841
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 1087
BbvI GCAGC 6 cut(s) 271, 476, 560, 799, 952, 962
BccI CCATC 4 cut(s) 235, 259, 374, 752
BceAI ACGGC 1 cut(s) 858
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 4 cut(s) 116, 240, 700, 791
BfaI CTAG 3 cut(s) 411, 578, 1058
BfmI CTRYAG 1 cut(s) 468
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 1 cut(s) 567
BlpI GCTNAGC 1 cut(s) 901
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 2 cut(s) 532, 866
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 482
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 9 cut(s) 190, 271, 304, 410, 445, 578, 655, 727, 937
BmuI ACTGGG 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 870
Bpu10I CCTNAGC 1 cut(s) 1087
Bpu1102I GCTNAGC 1 cut(s) 901
BpuEI CTTGAG 1 cut(s) 815
BpuMI CCSGG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 240
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 858
Bse1I ACTGG 4 cut(s) 339, 542, 786, 887
Bse8I GATNNNNATC 1 cut(s) 225
BseGI GGATG 9 cut(s) 10, 202, 286, 319, 343, 401, 569, 742, 763
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 142, 858
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 4 cut(s) 339, 542, 786, 887
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 6 cut(s) 271, 476, 560, 799, 952, 962
Bsh1236I CGCG 2 cut(s) 829, 854
BshFI GGCC 3 cut(s) 344, 534, 785
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 1 cut(s) 482
BslI CCNNNNNNNGG 2 cut(s) 142, 858
BsmAI GTCTC 4 cut(s) 116, 240, 700, 791
BsmBI CGTCTC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 3 cut(s) 344, 534, 785
Bso31I GGTCTC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 3 cut(s) 226, 349, 474
Bsp1720I GCTNAGC 1 cut(s) 901
BspACI CCGC 3 cut(s) 443, 782, 852
BspANI GGCC 3 cut(s) 344, 534, 785
BspCNI CTCAG 1 cut(s) 500
BspFNI CGCG 2 cut(s) 829, 854
BspLI GGNNCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 567
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 636
BspTI CTTAAG 1 cut(s) 752
BspTNI GGTCTC 1 cut(s) 240
BsrI ACTGG 4 cut(s) 339, 542, 786, 887
BssMI GATC 3 cut(s) 226, 349, 474
BssNAI GTATAC 1 cut(s) 776
Bst1107I GTATAC 1 cut(s) 776
Bst4CI ACNGT 2 cut(s) 159, 666
Bst6I CTCTTC 1 cut(s) 636
BstAFI CTTAAG 1 cut(s) 752
BstAPI GCANNNNNTGC 1 cut(s) 1079
BstC8I GCNNGC 2 cut(s) 717, 970
BstDEI CTNAG 3 cut(s) 487, 901, 1087
BstF5I GGATG 9 cut(s) 10, 202, 286, 319, 343, 401, 569, 742, 763
BstFNI CGCG 2 cut(s) 829, 854
BstHHI GCGC 2 cut(s) 289, 831
BstKTI GATC 3 cut(s) 229, 352, 477
BstMAI GTCTC 4 cut(s) 116, 240, 700, 791
BstMBI GATC 3 cut(s) 226, 349, 474
BstMWI GCNNNNNNNGC 9 cut(s) 17, 293, 314, 407, 464, 746, 1049, 1079, 1088
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 1 cut(s) 480
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 2 cut(s) 829, 854
BstV1I GCAGC 6 cut(s) 271, 476, 560, 799, 952, 962
BstZ17I GTATAC 1 cut(s) 776
BsuRI GGCC 3 cut(s) 344, 534, 785
BtgZI GCGATG 2 cut(s) 632, 810
BtsCI GGATG 9 cut(s) 10, 202, 286, 319, 343, 401, 569, 742, 763
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 3 cut(s) 535, 793, 991
BveI ACCTGC 1 cut(s) 567
Cac8I GCNNGC 2 cut(s) 717, 970
CfoI GCGC 2 cut(s) 289, 831
Cfr13I GGNCC 2 cut(s) 532, 866
Csp6I GTAC 2 cut(s) 844, 913
CspCI CAANNNNNGTGG 2 cut(s) 942, 977
CviAII CATG 4 cut(s) 370, 701, 779, 858
CviQI GTAC 2 cut(s) 844, 913
DdeI CTNAG 3 cut(s) 487, 901, 1087
DpnI GATC 3 cut(s) 228, 351, 476
DpnII GATC 3 cut(s) 226, 349, 474
EaeI YGGCCR 1 cut(s) 783
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco31I GGTCTC 1 cut(s) 240
Eco32I GATATC 1 cut(s) 882
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 3 cut(s) 345, 369, 741
Eco88I CYCGRG 1 cut(s) 726
EcoRV GATATC 1 cut(s) 882
Esp3I CGTCTC 1 cut(s) 791
FaeI CATG 4 cut(s) 373, 704, 782, 861
FatI CATG 4 cut(s) 369, 700, 778, 857
FblI GTMKAC 1 cut(s) 775
FokI GGATG 9 cut(s) 17, 209, 293, 326, 350, 388, 556, 749, 770
FspBI CTAG 3 cut(s) 411, 578, 1058
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 2 cut(s) 288, 830
GsuI CTGGAG 1 cut(s) 870
HaeIII GGCC 3 cut(s) 344, 534, 785
HapII CCGG 1 cut(s) 482
HhaI GCGC 2 cut(s) 289, 831
Hin1II CATG 4 cut(s) 373, 704, 782, 861
Hin6I GCGC 2 cut(s) 287, 829
HinP1I GCGC 2 cut(s) 287, 829
HindIII AAGCTT 1 cut(s) 898
HinfI GANTC 4 cut(s) 123, 179, 376, 485
HpaII CCGG 1 cut(s) 482
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 3 cut(s) 332, 776, 791
Hpy188I TCNGA 2 cut(s) 184, 325
Hpy188III TCNNGA 5 cut(s) 303, 405, 452, 728, 931
Hpy8I GTNNAC 3 cut(s) 332, 776, 791
HpyAV CCTTC 3 cut(s) 77, 87, 320
HpyCH4III ACNGT 2 cut(s) 159, 666
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 293, 314, 407, 464, 746, 1049, 1079, 1088
HpyF3I CTNAG 3 cut(s) 487, 901, 1087
Hsp92II CATG 4 cut(s) 373, 704, 782, 861
HspAI GCGC 2 cut(s) 287, 829
Kzo9I GATC 3 cut(s) 226, 349, 474
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 6 cut(s) 271, 476, 560, 799, 952, 962
LweI GCATC 9 cut(s) 190, 271, 304, 410, 445, 578, 655, 727, 937
MaeI CTAG 3 cut(s) 411, 578, 1058
MaeIII GTNAC 2 cut(s) 262, 554
MalI GATC 3 cut(s) 228, 351, 476
MboI GATC 3 cut(s) 226, 349, 474
MboII GAAGA 5 cut(s) 82, 281, 554, 653, 1078
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 6 cut(s) 290, 425, 447, 636, 803, 936
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 2 cut(s) 174, 404
MnlI CCTC 6 cut(s) 240, 334, 503, 583, 672, 705
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 2 cut(s) 609, 753
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 1 cut(s) 482
MunI CAATTG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 814
MvnI CGCG 2 cut(s) 829, 854
MwoI GCNNNNNNNGC 9 cut(s) 17, 293, 314, 407, 464, 746, 1049, 1079, 1088
NciI CCSGG 1 cut(s) 482
NdeII GATC 3 cut(s) 226, 349, 474
NlaIII CATG 4 cut(s) 373, 704, 782, 861
NlaIV GGNNCC 1 cut(s) 216
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 554
NsbI TGCGCA 1 cut(s) 288
NspI RCATGY 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 636
PctI GAATGC 1 cut(s) 814
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 123, 179, 376
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 532, 866
RsaI GTAC 2 cut(s) 845, 914
RsaNI GTAC 2 cut(s) 844, 913
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 2 cut(s) 609, 753
Sau3AI GATC 3 cut(s) 226, 349, 474
Sau96I GGNCC 2 cut(s) 532, 866
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 9 cut(s) 190, 271, 304, 410, 445, 578, 655, 727, 937
SfcI CTRYAG 1 cut(s) 468
Sfr274I CTCGAG 1 cut(s) 726
SinI GGWCC 1 cut(s) 866
SlaI CTCGAG 1 cut(s) 726
SmlI CTYRAG 3 cut(s) 726, 752, 794
SmoI CTYRAG 3 cut(s) 726, 752, 794
Sse9I AATT 6 cut(s) 290, 425, 447, 636, 803, 936
SsiI CCGC 3 cut(s) 443, 782, 852
SspMI CTAG 3 cut(s) 411, 578, 1058
StyD4I CCNGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 159, 666
TaqI TCGA 4 cut(s) 121, 302, 631, 727
TasI AATT 6 cut(s) 290, 425, 447, 636, 803, 936
TatI WGTACW 1 cut(s) 843
TauI GCSGC 2 cut(s) 446, 785
TfiI GAWTC 3 cut(s) 123, 179, 376
Tru1I TTAA 2 cut(s) 609, 753
Tru9I TTAA 2 cut(s) 609, 753
TscAI CASTG 3 cut(s) 542, 793, 991
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 8 cut(s) 8, 284, 464, 548, 812, 950, 965, 1082
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 2 cut(s) 25, 701
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 3 cut(s) 542, 793, 991
Vha464I CTTAAG 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 866
XceI RCATGY 1 cut(s) 782
XhoI CTCGAG 1 cut(s) 726
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 3 cut(s) 411, 578, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.