FvH4_5g05200
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012122
Physical Location & Seq
Forward (+)
3029486 .. 3031768
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05200.t3

Sequence Viewer

Length: 897 bp
ATGATAGTAACATCTTCTTCCTCCATTGCAAACCCTCCTCCTCATCTTCCTCCTCCAACTCCATCAACAACCTCCAAAAACCCCAACAATGCATTCCTACCCATCAGCCGCCGCGACCTCCTCGCTGCCCTCACCGTCACTGCAGCCCCTTTTGCACTCCACCCCATGTCCCTACAAGACACGGCTTCTGCTCGTGGCCTCTTCCAGATGCCCCCAGTTAGACTCATCAACCGGTATTTTCTGGTGAGGGCTGGGGAGTCTGAATATGAGAGCTGGGGAGTGATTAATACGAATCCGGTTGCGAAAACTTCTGTTGACAGCGGGTTGTCTGAGAAAGGGAAGAAGCAGGCGGTGAGGGCAGCTTTCGACTTGAAGGAAATGGGGGCTTGTGACACCAGCTGTTGGATTTGGCCTTCTATCACTCAGAGAGCTTACCAGGCTGCAGAGATCATTGCATCAGTTAACGGGGTCACTCGAAGTAACATTGTTCCGGAGTATAGCTTTCTAGATGCCCGTGGCTTAGGAGCTTATGAAGGAAAGAAACTAGAAGCTGTTTCAGAAGTATATGCATCAGATACTATTTCTCCAAGAATCAAGCCTCCTCCTATTGACGATGGAACCCCAAATGAGAGCGTCTCCGATGTGTTTGTTCGGGTGACACAACTCATGTCCATACTCGAGACTCAATACTCTGCAGACACGGTGATAATTGTCTCACCAGATTCGGACAACTTAACAATCCTACAAGCTGGCATAGTTGGACTTGACTTGCGAAGGCACAGAGAACTTTCTTTTGCACCAGGAGAAGTCAGATTTGTCGATACCAATAGTGTACCTACTTACAAGCAACCTGCATCAGCTGTATATAAGTGTTTAAATCCACCAAATTGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

299

Amino Acids

32.3

Weight (kDa)

5.98

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 69 - 262 6.8e-15 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62840 AT5G62840
fragaria_vesca FvH4_5g05200 FvH4_5g05200 FvH4_5g05200
malus_domestica MD14G1182500.v1.1
prunus_persica Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1 Prupe.5G175000_v2.0.a1
pyrus_communis pycom14g15160
rosa_chinensis RchiOBHm_Chr7g0193711
rosa_laevigata RLG00000004249
rosa_roxburghii Rroxscaffold_3G00261880
rosa_rugosa Rorug07G0011400
rosa_samantha Rh7AG138300 Rh7BG138500 Rh7CG142100 Rh7DG139600
rosa_wichuraiana Rw7G011780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 859
AccB7I CCANNNNNTGG 1 cut(s) 402
AccII CGCG 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 4 cut(s) 109, 112, 321, 350
AfaI GTAC 2 cut(s) 834, 892
AfiI CCNNNNNNNGG 1 cut(s) 402
AgeI ACCGGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 2 cut(s) 435, 799
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 9 cut(s) 273, 362, 399, 431, 501, 527, 551, 749, 860
AluI AGCT 9 cut(s) 273, 362, 399, 431, 501, 527, 551, 749, 860
Alw26I GTCTC 3 cut(s) 640, 674, 718
Ama87I CYCGRG 1 cut(s) 677
Aor13HI TCCGGA 1 cut(s) 490
AoxI GGCC 2 cut(s) 196, 410
ApeKI GCWGC 4 cut(s) 125, 143, 359, 440
AseI ATTAAT 1 cut(s) 285
AsiGI ACCGGT 1 cut(s) 231
AsuHPI GGTGA 6 cut(s) 124, 256, 364, 667, 708, 715
AvaI CYCGRG 1 cut(s) 677
BauI CACGAG 1 cut(s) 192
BbvI GCAGC 4 cut(s) 112, 155, 371, 427
BccI CCATC 3 cut(s) 70, 110, 608
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 2 cut(s) 437, 801
BcoDI GTCTC 3 cut(s) 640, 674, 718
BfaI CTAG 2 cut(s) 506, 545
BfmI CTRYAG 3 cut(s) 141, 441, 693
BfuAI ACCTGC 1 cut(s) 859
BisI GCNGC 6 cut(s) 109, 112, 126, 144, 360, 441
BlsI GCNGC 6 cut(s) 110, 113, 127, 145, 361, 442
Bme1390I CCNGG 2 cut(s) 437, 801
BmeT110I CYCGRG 1 cut(s) 677
BmiI GGNNCC 1 cut(s) 619
BmrFI CCNGG 2 cut(s) 437, 801
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 5 cut(s) 198, 464, 499, 578, 863
BmuI ACTGGG 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 620, 652
Bpu10I CCTNAGC 1 cut(s) 520
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 3 cut(s) 231, 295, 490
BsaXI ACNNNNNCTCC 2 cut(s) 568, 598
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 2 cut(s) 24, 450
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 2 cut(s) 437, 801
BseDI CCNNGG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 2 cut(s) 24, 450
BseMII CTCAG 2 cut(s) 321, 437
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 5 cut(s) 27, 30, 42, 110, 591
BseXI GCAGC 4 cut(s) 112, 155, 371, 427
BseYI CCCAGC 2 cut(s) 251, 273
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 198, 412
BshTI ACCGGT 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 3 cut(s) 232, 296, 491
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 402
BsmAI GTCTC 3 cut(s) 640, 674, 718
BsmBI CGTCTC 1 cut(s) 640
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 2 cut(s) 198, 412
BsoBI CYCGRG 1 cut(s) 677
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 1 cut(s) 447
BspACI CCGC 4 cut(s) 109, 112, 321, 350
BspANI GGCC 2 cut(s) 198, 412
BspCNI CTCAG 2 cut(s) 322, 436
BspEI TCCGGA 1 cut(s) 490
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 619
BspMAI CTGCAG 3 cut(s) 145, 445, 697
BspMI ACCTGC 1 cut(s) 859
BsrDI GCAATG 2 cut(s) 24, 450
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 1 cut(s) 447
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 437, 801
Bst4CI ACNGT 2 cut(s) 136, 703
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 348, 751
BstDEI CTNAG 3 cut(s) 330, 423, 520
BstDSI CCRYGG 1 cut(s) 514
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 1 cut(s) 450
BstMAI GTCTC 3 cut(s) 640, 674, 718
BstMBI GATC 1 cut(s) 447
BstMWI GCNNNNNNNGC 3 cut(s) 152, 356, 437
BstNI CCWGG 2 cut(s) 437, 801
BstSCI CCNGG 2 cut(s) 435, 799
BstSFI CTRYAG 3 cut(s) 141, 441, 693
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 4 cut(s) 112, 155, 371, 427
BsuRI GGCC 2 cut(s) 198, 412
BtgI CCRYGG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 859
Cac8I GCNNGC 2 cut(s) 348, 751
Cfr10I RCCGGY 1 cut(s) 231
CseI GACGC 1 cut(s) 622
Csp6I GTAC 2 cut(s) 833, 891
CspAI ACCGGT 1 cut(s) 231
CviAII CATG 2 cut(s) 166, 667
CviQI GTAC 2 cut(s) 833, 891
DdeI CTNAG 3 cut(s) 330, 423, 520
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
DraI TTTAAA 1 cut(s) 876
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 677
EcoRII CCWGG 2 cut(s) 435, 799
EcoT22I ATGCAT 2 cut(s) 94, 571
Esp3I CGTCTC 1 cut(s) 640
FaeI CATG 2 cut(s) 169, 670
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 165, 666
FauI CCCGC 1 cut(s) 314
Fnu4HI GCNGC 6 cut(s) 109, 112, 126, 144, 360, 441
Fsp4HI GCNGC 6 cut(s) 109, 112, 126, 144, 360, 441
FspBI CTAG 2 cut(s) 506, 545
GluI GCNGC 6 cut(s) 109, 112, 126, 144, 360, 441
GsaI CCCAGC 2 cut(s) 255, 277
HaeIII GGCC 2 cut(s) 198, 412
HapII CCGG 3 cut(s) 232, 296, 491
HgaI GACGC 1 cut(s) 622
Hin1II CATG 2 cut(s) 169, 670
HincII GTYRAC 2 cut(s) 316, 463
HindII GTYRAC 2 cut(s) 316, 463
HinfI GANTC 6 cut(s) 222, 257, 292, 591, 682, 722
HpaI GTTAAC 1 cut(s) 463
HpaII CCGG 3 cut(s) 232, 296, 491
HphI GGTGA 6 cut(s) 124, 256, 364, 667, 708, 715
Hpy166II GTNNAC 3 cut(s) 316, 463, 833
Hpy188I TCNGA 8 cut(s) 262, 331, 426, 559, 574, 640, 727, 812
Hpy188III TCNNGA 4 cut(s) 205, 491, 506, 679
Hpy8I GTNNAC 3 cut(s) 316, 463, 833
HpyAV CCTTC 4 cut(s) 367, 423, 527, 768
HpyCH4III ACNGT 2 cut(s) 136, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 356, 437
HpyF3I CTNAG 3 cut(s) 330, 423, 520
Hsp92II CATG 2 cut(s) 169, 670
Kpn2I TCCGGA 1 cut(s) 490
KspAI GTTAAC 1 cut(s) 463
Kzo9I GATC 1 cut(s) 447
LmnI GCTCC 1 cut(s) 524
Lsp1109I GCAGC 4 cut(s) 112, 155, 371, 427
LweI GCATC 5 cut(s) 198, 464, 499, 578, 863
MaeI CTAG 2 cut(s) 506, 545
MaeIII GTNAC 6 cut(s) 7, 136, 389, 469, 479, 655
MalI GATC 1 cut(s) 449
MboI GATC 1 cut(s) 447
MboII GAAGA 5 cut(s) 6, 9, 38, 193, 352
MluCI AATT 2 cut(s) 708, 886
MlyI GAGTC 3 cut(s) 216, 266, 676
MmeI TCCRAC 3 cut(s) 80, 383, 739
Mph1103I ATGCAT 2 cut(s) 94, 571
MroI TCCGGA 1 cut(s) 490
MseI TTAA 4 cut(s) 285, 462, 734, 875
MspA1I CMGCKG 3 cut(s) 321, 399, 860
MspI CCGG 3 cut(s) 232, 296, 491
MspR9I CCNGG 2 cut(s) 437, 801
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 2 cut(s) 437, 801
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 152, 356, 437
NdeII GATC 1 cut(s) 447
NlaIII CATG 2 cut(s) 169, 670
NlaIV GGNNCC 1 cut(s) 619
NmuCI GTSAC 4 cut(s) 136, 389, 469, 655
NsiI ATGCAT 2 cut(s) 94, 571
PaeR7I CTCGAG 1 cut(s) 677
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 3 cut(s) 292, 591, 722
PflMI CCANNNNNTGG 1 cut(s) 402
PinAI ACCGGT 1 cut(s) 231
PkrI GCNGC 6 cut(s) 110, 113, 127, 145, 361, 442
PleI GAGTC 3 cut(s) 216, 265, 676
PpsI GAGTC 3 cut(s) 216, 265, 676
PshBI ATTAAT 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 435, 799
PspFI CCCAGC 2 cut(s) 251, 273
PspGI CCWGG 2 cut(s) 435, 799
PspN4I GGNNCC 1 cut(s) 619
PstI CTGCAG 3 cut(s) 145, 445, 697
PvuII CAGCTG 2 cut(s) 399, 860
RsaI GTAC 2 cut(s) 834, 892
RsaNI GTAC 2 cut(s) 833, 891
SaqAI TTAA 4 cut(s) 285, 462, 734, 875
SatI GCNGC 6 cut(s) 109, 112, 126, 144, 360, 441
Sau3AI GATC 1 cut(s) 447
SchI GAGTC 3 cut(s) 216, 266, 676
ScrFI CCNGG 2 cut(s) 437, 801
SfaNI GCATC 5 cut(s) 198, 464, 499, 578, 863
SfcI CTRYAG 3 cut(s) 141, 441, 693
Sfr274I CTCGAG 1 cut(s) 677
SlaI CTCGAG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 2 cut(s) 708, 886
SsiI CCGC 4 cut(s) 109, 112, 321, 350
SspMI CTAG 2 cut(s) 506, 545
StyD4I CCNGG 2 cut(s) 435, 799
TaaI ACNGT 2 cut(s) 136, 703
TaqI TCGA 4 cut(s) 366, 475, 678, 819
TasI AATT 2 cut(s) 708, 886
TauI GCSGC 2 cut(s) 111, 114
TfiI GAWTC 3 cut(s) 292, 591, 722
Tru1I TTAA 4 cut(s) 285, 462, 734, 875
Tru9I TTAA 4 cut(s) 285, 462, 734, 875
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 4 cut(s) 136, 389, 469, 655
TseI GCWGC 4 cut(s) 125, 143, 359, 440
Tsp45I GTSAC 4 cut(s) 136, 389, 469, 655
TspDTI ATGAA 1 cut(s) 546
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 402
VspI ATTAAT 1 cut(s) 285
XbaI TCTAGA 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 677
XspI CTAG 2 cut(s) 506, 545
Zsp2I ATGCAT 2 cut(s) 94, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.