AT5G63110

histone deacetylase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
25315506 .. 25318347
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63110.1

Sequence Viewer

Length: 1416 bp
ATGGAGGCAGACGAAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCTACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGCCACCCGATGAAGCCTCACCGGATCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTCGCCCTAGCCTCGCTGACGCCTCCGATATCGGCCGATTCCATTCGCCGGAGTATGTTGACTTCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCGCTGCACGAAACCTAAGGCGATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTTCCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTATCAATTGGGGCGGTGGGCTTCACCATGCTAAGAAAAGCGAGGCTTCTGGGTTTTGCTATGTAAACGACATCGTGCTAGGGATTCTGGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACATAGATATTGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAGTTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAGATGTTGGCGCTGAAAAAGGGAAATACTATGCTCTAAATGTTCCACTAAACGATGGTATGGACGATGAAAGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATCAGCCAGAGGCAGTTGTTCTTCAGTGTGGTGCTGACTCCTTAAGTGGTGATCGGTTGGGTTGCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACGTTCCTCTCATGGTGTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCCCGTTGCTGGTGTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCGGACAACAAACTCCCTTACAATGAGTATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAAGTCCTATGGAGAATTTAAACACGCCCAAAGATATGGAGAGGATAAGGAACACGTTGCTGGAACAACTTTCGGGACTAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACGAGCCGGAAGATGACATGGAGACAAGACCAAAACCTCGCATCTGGAGTGGAACTGCGACTTATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCATGTCGTGGTGGCGCAACTACGGACAGGGACTCTACCGGTGAAGATGAAATGGATGACGATAACCCAGAGCCAGACGTGAATCCTCCATCGTCTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

52.65

Weight (kDa)

5.05

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 38 - 329 4.4e-87 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 659
AccI GTMKAC 2 cut(s) 944, 1071
AciI CCGC 7 cut(s) 18, 55, 294, 375, 444, 541, 748
AclI AACGTT 1 cut(s) 912
AclWI GGATC 3 cut(s) 127, 140, 281
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 2 cut(s) 635, 1090
AcuI CTGAAG 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 5 cut(s) 86, 238, 659, 969, 1310
AflII CTTAAG 2 cut(s) 832, 898
AflIII ACRYGT 1 cut(s) 1128
AgeI ACCGGT 1 cut(s) 1355
AgsI TTSAA 2 cut(s) 319, 859
AjiI CACGTC 1 cut(s) 1396
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 1 cut(s) 753
AluI AGCT 1 cut(s) 753
Alw26I GTCTC 3 cut(s) 84, 974, 1226
AlwI GGATC 3 cut(s) 127, 140, 281
AlwNI CAGNNNCTG 2 cut(s) 659, 992
AoxI GGCC 3 cut(s) 109, 223, 1048
ApeKI GCWGC 3 cut(s) 296, 395, 750
ApoI RAATTY 2 cut(s) 635, 1090
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AsiGI ACCGGT 1 cut(s) 1355
AspLEI GCGC 2 cut(s) 683, 1334
AspS9I GGNCC 2 cut(s) 38, 1049
AsuHPI GGTGA 6 cut(s) 119, 158, 338, 446, 851, 1370
AsuII TTCGAA 1 cut(s) 952
AvaII GGWCC 1 cut(s) 38
AxyI CCTNAGG 1 cut(s) 308
BamHI GGATCC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbsI GAAGAC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 283, 382, 762
BccI CCATC 3 cut(s) 572, 719, 1414
BceAI ACGGC 3 cut(s) 16, 351, 383
BciT130I CCWGG 1 cut(s) 654
BcoDI GTCTC 3 cut(s) 84, 974, 1226
BfaI CTAG 3 cut(s) 198, 509, 1167
BfmI CTRYAG 1 cut(s) 984
BfoI RGCGCY 1 cut(s) 684
BfrI CTTAAG 2 cut(s) 832, 898
BglII AGATCT 1 cut(s) 902
BisI GCNGC 5 cut(s) 19, 56, 297, 396, 751
BlsI GCNGC 5 cut(s) 20, 57, 298, 397, 752
Bme1390I CCNGG 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 1396
BmgT120I GGNCC 2 cut(s) 38, 1049
BmiI GGNNCC 3 cut(s) 39, 40, 134
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 2 cut(s) 30, 1260
BoxI GACNNNNGTC 1 cut(s) 1077
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 2 cut(s) 539, 1276
Bpu14I TTCGAA 1 cut(s) 952
BpuEI CTTGAG 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 571, 652
BsaWI WCCGGW 2 cut(s) 129, 1355
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 5 cut(s) 86, 238, 659, 969, 1310
Bse118I RCCGGY 1 cut(s) 1355
Bse1I ACTGG 3 cut(s) 664, 1174, 1193
Bse21I CCTNAGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 571, 652
BseGI GGATG 1 cut(s) 1378
BseLI CCNNNNNNNGG 5 cut(s) 86, 238, 659, 969, 1310
BseNI ACTGG 3 cut(s) 664, 1174, 1193
BseX3I CGGCCG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 283, 382, 762
BsgI GTGCAG 1 cut(s) 282
Bsh1285I CGRYCG 2 cut(s) 87, 226
BshFI GGCC 3 cut(s) 111, 225, 1050
BshTI ACCGGT 1 cut(s) 1355
BsiEI CGRYCG 2 cut(s) 87, 226
BsiSI CCGG 7 cut(s) 130, 239, 272, 378, 1007, 1217, 1356
BslFI GGGAC 4 cut(s) 51, 656, 1164, 1361
BslI CCNNNNNNNGG 5 cut(s) 86, 238, 659, 969, 1310
BsmAI GTCTC 3 cut(s) 84, 974, 1226
BsmFI GGGAC 4 cut(s) 51, 656, 1164, 1361
BsnI GGCC 3 cut(s) 111, 225, 1050
Bsp119I TTCGAA 1 cut(s) 952
Bsp143I GATC 5 cut(s) 84, 132, 286, 841, 902
Bsp19I CCATGG 1 cut(s) 571
BspACI CCGC 7 cut(s) 18, 55, 294, 375, 444, 541, 748
BspANI GGCC 3 cut(s) 111, 225, 1050
BspLI GGNNCC 3 cut(s) 39, 40, 134
BspMAI CTGCAG 1 cut(s) 988
BspPI GGATC 3 cut(s) 127, 140, 281
BspT104I TTCGAA 1 cut(s) 952
BspTI CTTAAG 2 cut(s) 832, 898
BsrFI RCCGGY 1 cut(s) 1355
BsrI ACTGG 3 cut(s) 664, 1174, 1193
BssAI RCCGGY 1 cut(s) 1355
BssECI CCNNGG 2 cut(s) 571, 652
BssMI GATC 5 cut(s) 84, 132, 286, 841, 902
BssNAI GTATAC 1 cut(s) 945
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 571
Bst1107I GTATAC 1 cut(s) 945
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 4 cut(s) 104, 176, 622, 1286
Bst6I CTCTTC 1 cut(s) 1311
BstACI GRCGYC 1 cut(s) 210
BstAFI CTTAAG 2 cut(s) 832, 898
BstBI TTCGAA 1 cut(s) 952
BstDEI CTNAG 3 cut(s) 181, 308, 462
BstDSI CCRYGG 1 cut(s) 571
BstF5I GGATG 1 cut(s) 1378
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 2 cut(s) 683, 1334
BstKTI GATC 5 cut(s) 87, 135, 289, 844, 905
BstMAI GTCTC 3 cut(s) 84, 974, 1226
BstMBI GATC 5 cut(s) 84, 132, 286, 841, 902
BstMCI CGRYCG 2 cut(s) 87, 226
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 1 cut(s) 654
BstPAI GACNNNNGTC 1 cut(s) 1077
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 984
BstV1I GCAGC 3 cut(s) 283, 382, 762
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 2 cut(s) 132, 902
BstXI CCANNNNNNTGG 3 cut(s) 578, 638, 1111
BstYI RGATCY 2 cut(s) 132, 902
BstZ17I GTATAC 1 cut(s) 945
BstZI CGGCCG 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 308
BsuRI GGCC 3 cut(s) 111, 225, 1050
BtgI CCRYGG 1 cut(s) 571
BtrI CACGTC 1 cut(s) 1396
BtsCI GGATG 1 cut(s) 1378
BtsIMutI CAGTG 3 cut(s) 603, 821, 1291
CaiI CAGNNNCTG 2 cut(s) 659, 992
CfoI GCGC 2 cut(s) 683, 1334
Cfr10I RCCGGY 1 cut(s) 1355
Cfr13I GGNCC 2 cut(s) 38, 1049
CseI GACGC 3 cut(s) 218, 428, 1159
CspAI ACCGGT 1 cut(s) 1355
CviAII CATG 7 cut(s) 458, 572, 922, 1067, 1228, 1310, 1320
DdeI CTNAG 3 cut(s) 181, 308, 462
DpnI GATC 5 cut(s) 86, 134, 288, 843, 904
DpnII GATC 5 cut(s) 84, 132, 286, 841, 902
DraI TTTAAA 1 cut(s) 1095
EaeI YGGCCR 1 cut(s) 223
EagI CGGCCG 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 1311
EarI CTCTTC 1 cut(s) 1311
EciI GGCGGA 1 cut(s) 364
EclXI CGGCCG 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 571
Eco32I GATATC 2 cut(s) 220, 427
Eco47I GGWCC 1 cut(s) 38
Eco52I CGGCCG 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 797
Eco81I CCTNAGG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 2 cut(s) 220, 427
EcoT14I CCWWGG 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 7 cut(s) 461, 575, 925, 1070, 1231, 1313, 1323
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FaqI GGGAC 4 cut(s) 51, 656, 1164, 1361
FatI CATG 7 cut(s) 457, 571, 921, 1066, 1227, 1309, 1319
FauI CCCGC 1 cut(s) 534
FblI GTMKAC 2 cut(s) 944, 1071
Fnu4HI GCNGC 5 cut(s) 19, 56, 297, 396, 751
FokI GGATG 1 cut(s) 1385
Fsp4HI GCNGC 5 cut(s) 19, 56, 297, 396, 751
FspBI CTAG 3 cut(s) 198, 509, 1167
GlaI GCGC 2 cut(s) 682, 1333
GluI GCNGC 5 cut(s) 19, 56, 297, 396, 751
GsuI CTGGAG 2 cut(s) 539, 1276
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 3 cut(s) 111, 225, 1050
HapII CCGG 7 cut(s) 130, 239, 272, 378, 1007, 1217, 1356
HgaI GACGC 3 cut(s) 218, 428, 1159
HhaI GCGC 2 cut(s) 683, 1334
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 7 cut(s) 461, 575, 925, 1070, 1231, 1313, 1323
Hin6I GCGC 2 cut(s) 681, 1332
HinP1I GCGC 2 cut(s) 681, 1332
HincII GTYRAC 2 cut(s) 250, 1072
HindII GTYRAC 2 cut(s) 250, 1072
HinfI GANTC 9 cut(s) 60, 228, 275, 315, 514, 827, 1277, 1349, 1399
HpaII CCGG 7 cut(s) 130, 239, 272, 378, 1007, 1217, 1356
HphI GGTGA 6 cut(s) 119, 158, 338, 446, 851, 1370
Hpy166II GTNNAC 5 cut(s) 250, 496, 568, 945, 1072
Hpy188I TCNGA 3 cut(s) 89, 217, 1282
Hpy188III TCNNGA 6 cut(s) 36, 518, 529, 772, 1149, 1255
Hpy8I GTNNAC 5 cut(s) 250, 496, 568, 945, 1072
Hpy99I CGWCG 5 cut(s) 37, 47, 85, 180, 350
HpyAV CCTTC 3 cut(s) 300, 769, 899
HpyCH4III ACNGT 4 cut(s) 104, 176, 622, 1286
HpyCH4IV ACGT 4 cut(s) 49, 912, 1130, 1395
HpyCH4V TGCA 2 cut(s) 299, 986
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 3 cut(s) 181, 308, 462
HpySE526I ACGT 4 cut(s) 49, 912, 1130, 1395
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 7 cut(s) 461, 575, 925, 1070, 1231, 1313, 1323
HspAI GCGC 2 cut(s) 681, 1332
KflI GGGWCCC 1 cut(s) 38
Kzo9I GATC 5 cut(s) 84, 132, 286, 841, 902
Lsp1109I GCAGC 3 cut(s) 283, 382, 762
LweI GCATC 2 cut(s) 30, 1260
MaeI CTAG 3 cut(s) 198, 509, 1167
MaeII ACGT 4 cut(s) 49, 912, 1130, 1395
MaeIII GTNAC 5 cut(s) 65, 662, 875, 1286, 1313
MalI GATC 5 cut(s) 86, 134, 288, 843, 904
MboI GATC 5 cut(s) 84, 132, 286, 841, 902
MboII GAAGA 6 cut(s) 334, 599, 803, 1232, 1298, 1373
MfeI CAATTG 1 cut(s) 436
MflI RGATCY 2 cut(s) 132, 902
MluCI AATT 4 cut(s) 404, 436, 635, 1090
MlyI GAGTC 3 cut(s) 69, 821, 1343
MmeI TCCRAC 1 cut(s) 976
MseI TTAA 6 cut(s) 407, 537, 833, 899, 1094, 1414
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 2 cut(s) 832, 898
MspI CCGG 7 cut(s) 130, 239, 272, 378, 1007, 1217, 1356
MspR9I CCNGG 1 cut(s) 654
MunI CAATTG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 428
NcoI CCATGG 1 cut(s) 571
NdeII GATC 5 cut(s) 84, 132, 286, 841, 902
NlaIII CATG 7 cut(s) 461, 575, 925, 1070, 1231, 1313, 1323
NlaIV GGNNCC 3 cut(s) 39, 40, 134
NmuCI GTSAC 3 cut(s) 662, 875, 1286
NspV TTCGAA 1 cut(s) 952
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 1167
PfeI GAWTC 6 cut(s) 228, 275, 315, 514, 1277, 1399
PflMI CCANNNNNTGG 1 cut(s) 659
PinAI ACCGGT 1 cut(s) 1355
PkrI GCNGC 5 cut(s) 20, 57, 298, 397, 752
Ple19I CGATCG 1 cut(s) 87
PleI GAGTC 3 cut(s) 68, 821, 1343
PpsI GAGTC 3 cut(s) 68, 821, 1343
PpuMI RGGWCCY 1 cut(s) 38
PshAI GACNNNNGTC 1 cut(s) 1077
Psp1406I AACGTT 1 cut(s) 912
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 3 cut(s) 39, 40, 134
PspPI GGNCC 2 cut(s) 38, 1049
PspPPI RGGWCCY 1 cut(s) 38
PstI CTGCAG 1 cut(s) 988
PstNI CAGNNNCTG 2 cut(s) 659, 992
PsuI RGATCY 2 cut(s) 132, 902
PvuI CGATCG 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 576
SalI GTCGAC 1 cut(s) 1070
SaqAI TTAA 6 cut(s) 407, 537, 833, 899, 1094, 1414
SatI GCNGC 5 cut(s) 19, 56, 297, 396, 751
Sau3AI GATC 5 cut(s) 84, 132, 286, 841, 902
Sau96I GGNCC 2 cut(s) 38, 1049
SchI GAGTC 3 cut(s) 69, 821, 1343
ScrFI CCNGG 1 cut(s) 654
SfaNI GCATC 2 cut(s) 30, 1260
SfcI CTRYAG 1 cut(s) 984
SfuI TTCGAA 1 cut(s) 952
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 3 cut(s) 527, 832, 898
SmoI CTYRAG 3 cut(s) 527, 832, 898
Sse9I AATT 4 cut(s) 404, 436, 635, 1090
SsiI CCGC 7 cut(s) 18, 55, 294, 375, 444, 541, 748
SspMI CTAG 3 cut(s) 198, 509, 1167
StyD4I CCNGG 1 cut(s) 652
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 4 cut(s) 104, 176, 622, 1286
TaiI ACGT 4 cut(s) 52, 915, 1133, 1398
TaqI TCGA 4 cut(s) 345, 952, 1071, 1201
TasI AATT 4 cut(s) 404, 436, 635, 1090
TauI GCSGC 2 cut(s) 21, 58
TfiI GAWTC 6 cut(s) 228, 275, 315, 514, 1277, 1399
Tru1I TTAA 6 cut(s) 407, 537, 833, 899, 1094, 1414
Tru9I TTAA 6 cut(s) 407, 537, 833, 899, 1094, 1414
TscAI CASTG 3 cut(s) 610, 821, 1291
TseFI GTSAC 3 cut(s) 662, 875, 1286
TseI GCWGC 3 cut(s) 296, 395, 750
Tsp45I GTSAC 3 cut(s) 662, 875, 1286
TspDTI ATGAA 6 cut(s) 134, 753, 1055, 1290, 1298, 1380
TspGWI ACGGA 5 cut(s) 60, 125, 253, 363, 1355
TspRI CASTG 3 cut(s) 610, 821, 1291
Van91I CCANNNNNTGG 1 cut(s) 659
Vha464I CTTAAG 2 cut(s) 832, 898
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 2 cut(s) 635, 1090
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XmiI GTMKAC 2 cut(s) 944, 1071
XspI CTAG 3 cut(s) 198, 509, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.