Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006653.1

Orthogroup ID

OG0009070

Physical Location & Seq

Genomic Coordinates Forward (+)

52527 .. 53174

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006653.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggagatggagttgaggaagcattttacagtgtctttccatagatttggtgatttctttccggggactgcgcaagttgaagacattgaatcagtgggacttggggagaattattctttgaatgtacccctgaacgatggaatagatgatgaggattttcgttggttatttcgtcccgtaatagtgatggagatgtatcaaccggaggctgttgttcttcagtttggggcagattcgctaaccggggacaggttagggtgcttcaacttgtctatcaaaggccatgcggattgtcttcgtttcctgcttagatcgtttaatgtccctttgatggtcttgggcgggggaggttatacgattcggaatgttgttcgttgctggtgttatgagacggcagtagcaatcggagcggaacttgatgatcagttgcctgacaacgactactatgattattttggtccaaattacactcttcatattgacacatgtgacatgaagaacctgaacaaacctgaaaagttggtggagatgaggaataagctgctagctagaccagatttgcagattacctcatgcacccagcgttccatttctgacaacaccatcaattacacaagttccggaggaggcggaagacaatatggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010154 GO:0010228 GO:0010431 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016043 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0033558 GO:0033993 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048519 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090351 GO:0097305 GO:0098732 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

215

Amino Acids

24.34

Weight (kDa)

4.74

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63110
fragaria_vesca	FvH4_1g25790 FvH4_5g06060
malus_domestica	MD06G1167500.v1.1 MD14G1173000.v1.1
prunus_persica	Prupe.5G167200_v2.0.a1
pyrus_communis	pycom06g15000 pycom14g14430
rosa_chinensis	RchiOBHm_Chr3g0484871 RchiOBHm_Chr7g0192801
rosa_laevigata	RLG00000004328 RLG00000004347
rosa_multiflora	Rmu_sc0002040.1_g000028 Rmu_sc0006653.1_g000011
rosa_roxburghii	Rroxscaffold_3G00262680
rosa_rugosa	Rorug07G0004600
rosa_samantha	Rh3CG297500 Rh7AG129900 Rh7BG131100 Rh7DG132100
rosa_wichuraiana	Rw3G023590 Rw7G011120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccBSI	CCGCTC	1 cut(s)	410
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	4 cut(s)	287, 342, 410, 630
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	249, 331
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	80, 89, 121, 265
AluBI	AGCT	2 cut(s)	541, 548
AluI	AGCT	2 cut(s)	541, 548
Alw26I	GTCTC	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	620
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	2 cut(s)	63, 244
AsuHPI	GGTGA	1 cut(s)	62
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	458
BbsI	GAAGAC	3 cut(s)	87, 287, 640
BbvI	GCAGC	1 cut(s)	528
BccI	CCATC	4 cut(s)	131, 181, 325, 611
BceAI	ACGGC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	63, 244
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	545, 549
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	2 cut(s)	63, 244
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	458
BmrFI	CCNGG	2 cut(s)	63, 244
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	3 cut(s)	87, 287, 640
BpuMI	CCSGG	2 cut(s)	63, 244
BsaJI	CCNNGG	2 cut(s)	62, 243
BsaWI	WCCGGW	2 cut(s)	202, 620
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 331
BseAI	TCCGGA	1 cut(s)	620
BseDI	CCNNGG	2 cut(s)	62, 243
BseLI	CCNNNNNNNGG	2 cut(s)	249, 331
BseRI	GAGGAG	1 cut(s)	639
BseXI	GCAGC	1 cut(s)	528
BseYI	CCCAGC	1 cut(s)	579
BshFI	GGCC	1 cut(s)	282
BsiSI	CCGG	4 cut(s)	62, 203, 243, 621
BslFI	GGGAC	5 cut(s)	79, 111, 159, 260, 308
BslI	CCNNNNNNNGG	2 cut(s)	249, 331
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	5 cut(s)	79, 111, 159, 260, 308
BsnI	GGCC	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	620
Bsp143I	GATC	2 cut(s)	311, 421
BspACI	CCGC	4 cut(s)	287, 342, 410, 630
BspANI	GGCC	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	620
BspOI	GCTAGC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	62, 243
BssMI	GATC	2 cut(s)	311, 421
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	314, 424
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	2 cut(s)	311, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	61, 242
BstV1I	GCAGC	1 cut(s)	528
BstV2I	GAAGAC	3 cut(s)	87, 287, 640
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	36, 99
Cac8I	GCNNGC	1 cut(s)	546
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	4 cut(s)	284, 486, 493, 573
CviJI	RGCY	4 cut(s)	209, 282, 541, 548
CviKI_1	RGCY	4 cut(s)	209, 282, 541, 548
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	313, 423
DpnII	GATC	2 cut(s)	311, 421
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
EciI	GGCGGA	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	4 cut(s)	287, 489, 496, 576
FaqI	GGGAC	5 cut(s)	79, 111, 159, 260, 308
FatI	CATG	4 cut(s)	283, 485, 492, 572
FauI	CCCGC	1 cut(s)	335
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	542
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	2 cut(s)	545, 549
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	542
GsaI	CCCAGC	1 cut(s)	583
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	4 cut(s)	62, 203, 243, 621
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	4 cut(s)	287, 489, 496, 576
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	3 cut(s)	89, 233, 358
HpaII	CCGG	4 cut(s)	62, 203, 243, 621
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	3 cut(s)	363, 407, 595
Hpy188III	TCNNGA	1 cut(s)	621
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	562, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	4 cut(s)	287, 489, 496, 576
HspAI	GCGC	1 cut(s)	71
Kpn2I	TCCGGA	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	311, 421
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	1 cut(s)	528
MaeI	CTAG	2 cut(s)	545, 549
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	2 cut(s)	313, 423
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	2 cut(s)	311, 421
MboII	GAAGA	6 cut(s)	92, 209, 287, 464, 508, 645
MluCI	AATT	3 cut(s)	109, 463, 607
MnlI	CCTC	8 cut(s)	9, 145, 199, 341, 525, 580, 617, 620
MroI	TCCGGA	1 cut(s)	620
MseI	TTAA	1 cut(s)	318
MspI	CCGG	4 cut(s)	62, 203, 243, 621
MspR9I	CCNGG	2 cut(s)	63, 244
MwoI	GCNNNNNNNGC	1 cut(s)	407
NciI	CCSGG	2 cut(s)	63, 244
NdeII	GATC	2 cut(s)	311, 421
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	4 cut(s)	287, 489, 496, 576
NmuCI	GTSAC	1 cut(s)	488
NsbI	TGCGCA	1 cut(s)	72
NspI	RCATGY	1 cut(s)	489
PciI	ACATGT	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	89, 233, 358
PkrI	GCNGC	1 cut(s)	543
PscI	ACATGT	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	458
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	2 cut(s)	311, 421
Sau96I	GGNCC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	63, 244
SetI	ASST	7 cut(s)	254, 352, 504, 514, 543, 550, 572
SinI	GGWCC	1 cut(s)	458
Sse9I	AATT	3 cut(s)	109, 463, 607
SsiI	CCGC	4 cut(s)	287, 342, 410, 630
SspMI	CTAG	2 cut(s)	545, 549
StyD4I	CCNGG	2 cut(s)	61, 242
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	3 cut(s)	109, 463, 607
TfiI	GAWTC	3 cut(s)	89, 233, 358
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	36, 99
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	464, 509
TspRI	CASTG	2 cut(s)	36, 99
VpaK11BI	GGWCC	1 cut(s)	458
XceI	RCATGY	1 cut(s)	489
XspI	CTAG	2 cut(s)	545, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.