Rh3CG297500

Belongs to the histone deacetylase family. HD Type 1 subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009070
Physical Location & Seq
Forward (+)
30483030 .. 30483909
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG297500.1

Sequence Viewer

Length: 477 bp
ATGGAGATGTATCAACCGGAGGCTGTTGTTCTTCAGTTTGGGGCAGATTCGCTAACCGGGGACAGGTTAGGGTGCTTCAACTTGTCTATCAAAGGCCATGCGGATTGTCTTCGTTTCCTGCTTAGATCGTTTAATGTCCCTTTGATGGTCTTCGGCGGGGGAGGTTATACGATTCGGAATGTTGTTCGTTGCTGGTGTTATGAGACGGCAGTAGCAATCGGAGCGGAACTTGATGGTCAGTTGCCTGACAACGACTACTATGATTATTTTGGTCCAAATTACACTCTTCATATTGACACATGTGACATGAAGAACCTGAACAAACCTGAAAAGTTGGTGGAGATGAGGAATAAGCTGCTAGACCAGATTTGCAGATTACCTCATGCACCCAGCGTTCCATTTCTGACAACACCATCAATTACACAAGTTCCGGAGGAGGCGGAAGACAATATGGATGAAAGATCAAAGTGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009553 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009892 GO:0009941 GO:0009987 GO:0010033 GO:0010154 GO:0010228 GO:0010431 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016043 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032504 GO:0033558 GO:0033993 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048519 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0090351 GO:0097305 GO:0098732 GO:0140096 GO:1901564 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

158

Amino Acids

17.98

Weight (kDa)

4.77

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 2 - 70 1.6e-14 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 4 cut(s) 101, 156, 224, 440
AcuI CTGAAG 1 cut(s) 17
AfiI CCNNNNNNNGG 2 cut(s) 63, 145
AflIII ACRYGT 1 cut(s) 299
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 58
AvaII GGWCC 1 cut(s) 272
BbsI GAAGAC 3 cut(s) 101, 142, 450
BbvI GCAGC 1 cut(s) 342
BccI CCATC 3 cut(s) 139, 227, 421
BceAI ACGGC 1 cut(s) 222
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 359
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 58
BpiI GAAGAC 3 cut(s) 101, 142, 450
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 2 cut(s) 16, 430
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 145
BseAI TCCGGA 1 cut(s) 430
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 63, 145
BseRI GAGGAG 1 cut(s) 449
BseXI GCAGC 1 cut(s) 342
BseYI CCCAGC 1 cut(s) 389
BshFI GGCC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 17, 57, 431
BslFI GGGAC 2 cut(s) 74, 122
BslI CCNNNNNNNGG 2 cut(s) 63, 145
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 74, 122
BsnI GGCC 1 cut(s) 96
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 125, 461
BspACI CCGC 4 cut(s) 101, 156, 224, 440
BspANI GGCC 1 cut(s) 96
BspEI TCCGGA 1 cut(s) 430
BsrBI CCGCTC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 125, 461
Bst6I CTCTTC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 460
BstKTI GATC 2 cut(s) 128, 464
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 125, 461
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 3 cut(s) 101, 142, 450
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 272
CviAII CATG 4 cut(s) 98, 300, 307, 383
CviJI RGCY 3 cut(s) 23, 96, 355
CviKI_1 RGCY 3 cut(s) 23, 96, 355
DdeI CTNAG 1 cut(s) 122
DpnI GATC 2 cut(s) 127, 463
DpnII GATC 2 cut(s) 125, 461
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
EciI GGCGGA 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 4 cut(s) 101, 303, 310, 386
FaiI YATR 9 cut(s) 99, 168, 201, 261, 291, 301, 308, 384, 452
FaqI GGGAC 2 cut(s) 74, 122
FatI CATG 4 cut(s) 97, 299, 306, 382
FauI CCCGC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 1 cut(s) 356
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 356
GsaI CCCAGC 1 cut(s) 393
HaeIII GGCC 1 cut(s) 96
HapII CCGG 3 cut(s) 17, 57, 431
Hin1II CATG 4 cut(s) 101, 303, 310, 386
HinfI GANTC 2 cut(s) 47, 172
HpaII CCGG 3 cut(s) 17, 57, 431
Hpy188I TCNGA 3 cut(s) 177, 221, 405
Hpy188III TCNNGA 1 cut(s) 431
HpyCH4V TGCA 2 cut(s) 372, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 4 cut(s) 101, 303, 310, 386
Kpn2I TCCGGA 1 cut(s) 430
Kzo9I GATC 2 cut(s) 125, 461
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 1 cut(s) 342
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 127, 463
MbiI CCGCTC 1 cut(s) 224
MboI GATC 2 cut(s) 125, 461
MboII GAAGA 6 cut(s) 23, 101, 142, 278, 322, 455
MluCI AATT 2 cut(s) 277, 417
MnlI CCTC 6 cut(s) 13, 155, 339, 390, 427, 430
MroI TCCGGA 1 cut(s) 430
MseI TTAA 1 cut(s) 132
MspI CCGG 3 cut(s) 17, 57, 431
MspR9I CCNGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 1 cut(s) 58
NdeII GATC 2 cut(s) 125, 461
NlaIII CATG 4 cut(s) 101, 303, 310, 386
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 303
PciI ACATGT 1 cut(s) 299
PfeI GAWTC 2 cut(s) 47, 172
PkrI GCNGC 1 cut(s) 357
PscI ACATGT 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 389
PspPI GGNCC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 2 cut(s) 125, 461
Sau96I GGNCC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 58
SetI ASST 6 cut(s) 68, 166, 318, 328, 357, 382
SinI GGWCC 1 cut(s) 272
Sse9I AATT 2 cut(s) 277, 417
SsiI CCGC 4 cut(s) 101, 156, 224, 440
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 56
TasI AATT 2 cut(s) 277, 417
TfiI GAWTC 2 cut(s) 47, 172
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 278, 323, 471
VpaK11BI GGWCC 1 cut(s) 272
XceI RCATGY 1 cut(s) 303
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.