Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006289

Physical Location & Seq

Genomic Coordinates Forward (+)

25406252 .. 25408456

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCGAAGAGAACGACACACACGTACTCGAGCGAGGACGCCGCGCCGGATGGACCCGACTCTGATCTCTTCGTATACTACTGCAAACACTGTGGTTCTCATGTCCTTATCACTGATACCCAGTTGCAGAAGATGCCAAAAAGGAAGACCGACAGGTCGAATGTACTTGACAAGAAGACGCACCTTGCTAGGTTGAATGTCAGCGAGGGAGGAAAAGTTTTATTGAAACGTGGCGAAGGAAAAATGGAGAGACAGTTTAGAATGAACTGTATCGGTTGTGAGCTTTTTGTTTGTTATCGTGCTGAAGAGAATCTGGAAACAGCGTCTTTCATTTACATTGTTGATGGAGCACTTAGTGCTGTTGCTGCAGAAACCAACCCACAGGATGCACCAGTACCTCCCTGCATTTCACAACTCGACGGTGGACTTGTTCAGGTTGCAATAGAAGTGGAAGACCGTGCACAACGTTCAGCAATCACAAGGGTAAATGCTGATGATGTTCGTGTGACTGTTGCTGCACCAGCAGCCCGTGGGGAAGCTAACAACGAGCTTCTGGAATTCATGGGAAGGGTACCAAATCAATCCGTTATTAATCACTTTTTAAGATTTATACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167

Protein Analysis

205

Amino Acids

22.72

Weight (kDa)

6.22

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STEEP1	PF25809	9 - 105	2.2e-23	STEEP1 domain
DUF167	PF02594	125 - 196	5.9e-18	Uncharacterised ACR, YggU family COG1872

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63440 AT5G63440 AT5G63440
fragaria_vesca	FvH4_7g00630
malus_domestica	MD02G1316100.v1.1 MD07G1005800.v1.1
prunus_persica	Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.4G287600_v2.0.a1 Prupe.4G287600_v2.0.a1
pyrus_communis	pycom02g26480 pycom07g00480
rosa_chinensis	RchiOBHm_Chr1g0314831 RchiOBHm_Chr7g0215371
rosa_laevigata	RLG00000030761
rosa_multiflora	Rmu_sc0002833.1_g000041 Rmu_sc0010489.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331850
rosa_rugosa	Rorug01G0002200 Rorug01G0002300
rosa_samantha	Rh1AG013100 Rh1BG004700 Rh1CG011600 Rh1DG006400 Rh7BG281400
rosa_wichuraiana	Rw1G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
Acc65I	GGTACC	1 cut(s)	571
AccB1I	GGYRCC	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	44
AciI	CCGC	1 cut(s)	42
AclI	AACGTT	1 cut(s)	466
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	356
AfaI	GTAC	4 cut(s)	26, 165, 396, 573
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	196, 226
AluBI	AGCT	3 cut(s)	283, 539, 550
AluI	AGCT	3 cut(s)	283, 539, 550
Alw21I	GWGCWC	2 cut(s)	352, 463
Alw26I	GTCTC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	459
Ama87I	CYCGRG	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	3 cut(s)	365, 515, 524
ApoI	RAATTY	1 cut(s)	557
AseI	ATTAAT	1 cut(s)	591
Asp718I	GGTACC	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	571
BbsI	GAAGAC	3 cut(s)	152, 182, 459
Bbv12I	GWGCWC	2 cut(s)	352, 463
BbvI	GCAGC	3 cut(s)	352, 502, 536
BccI	CCATC	2 cut(s)	44, 338
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	189, 616
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	4 cut(s)	42, 366, 516, 525
BlsI	GCNGC	4 cut(s)	43, 367, 517, 526
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	55, 573
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	123, 376
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	3 cut(s)	152, 182, 459
BsaAI	YACGTR	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 239, 269
Bse1I	ACTGG	2 cut(s)	121, 392
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	2 cut(s)	55, 391
BseNI	ACTGG	2 cut(s)	121, 392
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	352, 502, 536
BsgI	GTGCAG	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	2 cut(s)	352, 463
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	352, 463
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	55, 573
BspMAI	CTGCAG	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	121, 392
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	1 cut(s)	64
BssNAI	GTATAC	1 cut(s)	76
BssNI	GRCGYC	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	76
Bst4CI	ACNGT	6 cut(s)	92, 255, 269, 422, 458, 511
Bst6I	CTCTTC	3 cut(s)	2, 74, 300
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	2 cut(s)	133, 356
BstBAI	YACGTR	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	2 cut(s)	55, 391
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 356, 365, 521, 524
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	3 cut(s)	352, 502, 536
BstV2I	GAAGAC	3 cut(s)	152, 182, 459
BstZ17I	GTATAC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	55, 391
BtsIMutI	CAGTG	2 cut(s)	88, 111
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	3 cut(s)	47, 187, 312
Csp6I	GTAC	4 cut(s)	25, 164, 395, 572
CspCI	CAANNNNNGTGG	4 cut(s)	73, 108, 429, 464
CviAII	CATG	2 cut(s)	101, 562
CviJI	RGCY	4 cut(s)	283, 527, 539, 550
CviKI_1	RGCY	4 cut(s)	283, 527, 539, 550
CviQI	GTAC	4 cut(s)	25, 164, 395, 572
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraIII	CACNNNGTG	1 cut(s)	356
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	2, 74, 300
EarI	CTCTTC	3 cut(s)	2, 74, 300
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	557
FaeI	CATG	2 cut(s)	104, 565
FaiI	YATR	4 cut(s)	76, 102, 563, 611
FatI	CATG	2 cut(s)	100, 561
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	42, 366, 516, 525
FokI	GGATG	2 cut(s)	62, 398
Fsp4HI	GCNGC	4 cut(s)	42, 366, 516, 525
FspBI	CTAG	2 cut(s)	189, 616
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	4 cut(s)	42, 366, 516, 525
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	3 cut(s)	47, 187, 312
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	104, 565
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	2 cut(s)	59, 310
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	76, 425, 461
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	314, 554
Hpy8I	GTNNAC	3 cut(s)	76, 425, 461
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	2 cut(s)	230, 561
HpyCH4III	ACNGT	6 cut(s)	92, 255, 269, 422, 458, 511
HpyCH4IV	ACGT	3 cut(s)	23, 229, 466
HpyCH4V	TGCA	8 cut(s)	84, 127, 368, 389, 405, 440, 461, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 356, 365, 521, 524
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	3 cut(s)	23, 229, 466
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	104, 565
HspAI	GCGC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	575
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	3 cut(s)	352, 502, 536
LweI	GCATC	2 cut(s)	123, 376
MaeI	CTAG	2 cut(s)	189, 616
MaeII	ACGT	3 cut(s)	23, 229, 466
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	7 cut(s)	19, 61, 142, 157, 187, 317, 464
MhlI	GDGCHC	2 cut(s)	352, 463
MluCI	AATT	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	4 cut(s)	28, 199, 203, 408
MseI	TTAA	2 cut(s)	591, 602
MspI	CCGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	5 cut(s)	133, 356, 365, 521, 524
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	104, 565
NlaIV	GGNNCC	2 cut(s)	55, 573
NmuCI	GTSAC	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	43, 367, 517, 526
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	55, 573
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	4 cut(s)	26, 165, 396, 573
RsaNI	GTAC	4 cut(s)	25, 164, 395, 572
SaqAI	TTAA	2 cut(s)	591, 602
SatI	GCNGC	4 cut(s)	42, 366, 516, 525
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	352, 463
SfaNI	GCATC	2 cut(s)	123, 376
SfcI	CTRYAG	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	557
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	189, 616
TaaI	ACNGT	6 cut(s)	92, 255, 269, 422, 458, 511
TaiI	ACGT	3 cut(s)	26, 232, 469
TaqI	TCGA	3 cut(s)	29, 158, 417
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	557
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	591, 602
Tru9I	TTAA	2 cut(s)	591, 602
TscAI	CASTG	2 cut(s)	95, 118
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	3 cut(s)	365, 515, 524
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	3 cut(s)	278, 319, 550
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	95, 118
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	53
VspI	ATTAAT	1 cut(s)	591
XapI	RAATTY	1 cut(s)	557
XhoI	CTCGAG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	2 cut(s)	189, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.