RchiOBHm_Chr7g0215371

DUF167

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006289
Physical Location & Seq
Forward (+)
32994838 .. 32995208
371 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19270

Sequence Viewer

Length: 303 bp
ATGGACCTGACTCTGATCTCTTCGTCTATCACAACAAACACTATGGATCTCGATCACCTCCTCATAACTAATACCCAGTTCCAGAAAATGCCCAAAAAGACGACAGACAAAGCTTATATCTTGGACAAGACCAAACACCTTGCAATTCTAAAAATTAGTGAGGGTGGAAAAGTTATTTTGAAAAGGGGTGAAGGAAAAAAGATTTGGAAGGTACTGCTTTCATTTATGTTGTTGGCAATGCTTCTTGTTCCTAGCACAGTTGCTGCTGAAACCAACCCACATGATGCTCCTGTGTCACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

100

Amino Acids

11.06

Weight (kDa)

9.48

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STEEP1 PF25809 19 - 65 5.1e-07 STEEP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 54
AfaI GTAC 1 cut(s) 213
AgsI TTSAA 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AlwI GGATC 1 cut(s) 54
AlwNI CAGNNNCTG 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 47, 200, 288
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 250
BfaI CTAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 51
BseMI GCAATG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 15, 46, 52
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 76
BssMI GATC 3 cut(s) 15, 46, 52
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 25
BstKTI GATC 3 cut(s) 18, 49, 55
BstMBI GATC 3 cut(s) 15, 46, 52
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 281
CviJI RGCY 1 cut(s) 113
CviKI_1 RGCY 1 cut(s) 113
CviQI GTAC 1 cut(s) 212
DpnI GATC 3 cut(s) 17, 48, 54
DpnII GATC 3 cut(s) 15, 46, 52
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 1 cut(s) 284
FaiI YATR 5 cut(s) 44, 65, 117, 227, 282
FatI CATG 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 252
GluI GCNGC 1 cut(s) 264
Hin1II CATG 1 cut(s) 284
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 1 cut(s) 10
HphI GGTGA 3 cut(s) 47, 200, 288
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 50, 82
HpyAV CCTTC 2 cut(s) 185, 202
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 143
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 3 cut(s) 15, 46, 52
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 3 cut(s) 20, 89, 95
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 294
MalI GATC 3 cut(s) 17, 48, 54
MboI GATC 3 cut(s) 15, 46, 52
MboII GAAGA 1 cut(s) 12
MflI RGATCY 1 cut(s) 46
MluCI AATT 2 cut(s) 144, 153
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 3 cut(s) 68, 71, 154
NdeII GATC 3 cut(s) 15, 46, 52
NlaIII CATG 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 294
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 15, 46, 52
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 4
SetI ASST 5 cut(s) 9, 60, 115, 141, 213
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 4
Sse9I AATT 2 cut(s) 144, 153
SspMI CTAG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 51
TasI AATT 2 cut(s) 144, 153
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 4
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.