Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006289

Physical Location & Seq

Genomic Coordinates Forward (+)

24254078 .. 24256325

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26480.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGACCTGACTCTGATCGATCTTCGTCTATTACTGCAAGCACTGTGGATCCCACCTCCTCATAACTGTAGTTATACCCAATTGCAGAAAATGCCGAAGAGGAAGACGGACAAGGCTTATGTGTTGGACAAGAGCAAGCATCTTGCAAGGCTCAACATTGCTGAGGCTGGAAAGGTTTTGTTGAAAAGGGGGGAAGGGAAATTGGAGAAGCAATTTCGAATGAACTGTGTGGGTTGTGGACTCTTTGTTCTCTATCGCTCTGAAGAAGACTTGGAAGGTGCTTCTTTCATTTATGTTGTTGATGGTGCTCTAAGCACAGTTGCTGCTGAAACCAACCCACAGGATGCTCCTGTGCCACCTTGTATATCAAACCTAGAAGGGGGACTCGTTCAAGTGGCTATAGAAGTGGAAGATCGTGCACAACGCTCAGCAATCACAAGAGTGAATGCTGATGATGTAAGAGTCACTGTAGCTGCACCTGCTGCTCGGGGAGAAGCAAACAACGAGCTCTTGGAATTCATGGCCAAAGTGTTGGGTCTGAGACTAAGCCAGATGACTCTTCAGAGAGGGTGGAATAACAAATCAAAACTCCTTGTGGTAGAGGATTTGTCTGCTAGGCAAGTATATGAGAAACTTCTGGAGGCTGTGCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167

Protein Analysis

219

Amino Acids

24.18

Weight (kDa)

7.63

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63440 AT5G63440 AT5G63440
fragaria_vesca	FvH4_7g00630
malus_domestica	MD02G1316100.v1.1 MD07G1005800.v1.1
prunus_persica	Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.4G287600_v2.0.a1 Prupe.4G287600_v2.0.a1
pyrus_communis	pycom02g26480 pycom07g00480
rosa_chinensis	RchiOBHm_Chr1g0314831 RchiOBHm_Chr7g0215371
rosa_laevigata	RLG00000030761
rosa_multiflora	Rmu_sc0002833.1_g000041 Rmu_sc0010489.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331850
rosa_rugosa	Rorug01G0002200 Rorug01G0002300
rosa_samantha	Rh1AG013100 Rh1BG004700 Rh1CG011600 Rh1DG006400 Rh7BG281400
rosa_wichuraiana	Rw1G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	487
AclWI	GGATC	2 cut(s)	43, 56
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	2 cut(s)	282, 545
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	184, 392
AleI	CACNNNNGTG	1 cut(s)	440
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	2 cut(s)	473, 508
AluI	AGCT	2 cut(s)	473, 508
Alw21I	GWGCWC	3 cut(s)	310, 421, 510
Alw26I	GTCTC	1 cut(s)	535
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	43, 56
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	1 cut(s)	522
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	3 cut(s)	323, 473, 482
ApoI	RAATTY	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	4
AsuII	TTCGAA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	2 cut(s)	110, 273
Bbv12I	GWGCWC	3 cut(s)	310, 421, 510
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	310, 460, 469
BccI	CCATC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	2 cut(s)	374, 615
BfmI	CTRYAG	3 cut(s)	67, 399, 468
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	324, 474, 483
BlpI	GCTNAGC	1 cut(s)	427
BlsI	GCNGC	3 cut(s)	325, 475, 484
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	50
BmsI	GCATC	2 cut(s)	148, 334
BpiI	GAAGAC	2 cut(s)	110, 273
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	427
Bpu14I	TTCGAA	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	18
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	3 cut(s)	153, 441, 530
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	3 cut(s)	310, 460, 469
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	524
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	3 cut(s)	310, 421, 510
BsiHKCI	CYCGRG	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	524
BsoBI	CYCGRG	1 cut(s)	486
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	310, 421, 510
Bsp143I	GATC	4 cut(s)	15, 19, 48, 412
Bsp1720I	GCTNAGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	3 cut(s)	154, 440, 531
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	50
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	2 cut(s)	43, 56
BspT104I	TTCGAA	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	156
BssMI	GATC	4 cut(s)	15, 19, 48, 412
Bst4CI	ACNGT	5 cut(s)	45, 68, 227, 319, 469
Bst6I	CTCTTC	2 cut(s)	92, 564
BstAPI	GCANNNNNTGC	2 cut(s)	91, 482
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	2 cut(s)	39, 137
BstDEI	CTNAG	5 cut(s)	162, 311, 427, 539, 545
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	4 cut(s)	18, 22, 51, 415
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	4 cut(s)	15, 19, 48, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 479, 482
BstSFI	CTRYAG	3 cut(s)	67, 399, 468
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	3 cut(s)	310, 460, 469
BstV2I	GAAGAC	2 cut(s)	110, 273
BstX2I	RGATCY	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	524
BsuTUI	ATCGAT	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	41, 465
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	2 cut(s)	39, 137
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	18
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	1 cut(s)	520
CviJI	RGCY	9 cut(s)	116, 151, 167, 398, 473, 508, 524, 549, 644
CviKI_1	RGCY	9 cut(s)	116, 151, 167, 398, 473, 508, 524, 549, 644
DdeI	CTNAG	5 cut(s)	162, 311, 427, 539, 545
DpnI	GATC	4 cut(s)	17, 21, 50, 414
DpnII	GATC	4 cut(s)	15, 19, 48, 412
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	2 cut(s)	92, 564
EarI	CTCTTC	2 cut(s)	92, 564
Ecl136II	GAGCTC	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	2 cut(s)	282, 545
Eco88I	CYCGRG	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	515
EcoT38I	GRGCYC	1 cut(s)	510
FaeI	CATG	1 cut(s)	523
FaiI	YATR	9 cut(s)	63, 75, 120, 294, 365, 401, 521, 625, 627
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	324, 474, 483
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	3 cut(s)	324, 474, 483
FspBI	CTAG	2 cut(s)	374, 615
GluI	GCNGC	3 cut(s)	324, 474, 483
HaeIII	GGCC	1 cut(s)	524
Hin1II	CATG	1 cut(s)	523
HinfI	GANTC	5 cut(s)	10, 240, 384, 462, 556
Hpy166II	GTNNAC	2 cut(s)	239, 419
Hpy188I	TCNGA	4 cut(s)	15, 262, 540, 564
Hpy188III	TCNNGA	1 cut(s)	638
Hpy8I	GTNNAC	2 cut(s)	239, 419
HpyAV	CCTTC	3 cut(s)	188, 269, 371
HpyCH4III	ACNGT	5 cut(s)	45, 68, 227, 319, 469
HpyCH4V	TGCA	6 cut(s)	37, 85, 146, 419, 476, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 479, 482
HpyF3I	CTNAG	5 cut(s)	162, 311, 427, 539, 545
Hsp92II	CATG	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	15, 19, 48, 412
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	7 cut(s)	20, 153, 326, 363, 492, 563, 623
Lsp1109I	GCAGC	3 cut(s)	310, 460, 469
LweI	GCATC	2 cut(s)	148, 334
MaeI	CTAG	2 cut(s)	374, 615
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	4 cut(s)	17, 21, 50, 414
MboI	GATC	4 cut(s)	15, 19, 48, 412
MboII	GAAGA	7 cut(s)	14, 109, 115, 275, 278, 422, 551
MfeI	CAATTG	1 cut(s)	80
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	3 cut(s)	310, 421, 510
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	4 cut(s)	80, 200, 212, 515
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	5 cut(s)	4, 234, 378, 471, 550
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	7 cut(s)	66, 69, 93, 157, 560, 595, 634
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	524
MunI	CAATTG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	451
MwoI	GCNNNNNNNGC	3 cut(s)	91, 479, 482
NdeII	GATC	4 cut(s)	15, 19, 48, 412
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	463
NspV	TTCGAA	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	440
PaqCI	CACCTGC	1 cut(s)	487
PctI	GAATGC	1 cut(s)	451
PkrI	GCNGC	3 cut(s)	325, 475, 484
PleI	GAGTC	5 cut(s)	4, 234, 378, 470, 550
PpsI	GAGTC	5 cut(s)	4, 234, 378, 470, 550
Psp124BI	GAGCTC	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	510
SatI	GCNGC	3 cut(s)	324, 474, 483
Sau3AI	GATC	4 cut(s)	15, 19, 48, 412
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	5 cut(s)	4, 234, 378, 471, 550
SduI	GDGCHC	3 cut(s)	310, 421, 510
SfaNI	GCATC	2 cut(s)	148, 334
SfcI	CTRYAG	3 cut(s)	67, 399, 468
SfuI	TTCGAA	1 cut(s)	217
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	4 cut(s)	80, 200, 212, 515
SspMI	CTAG	2 cut(s)	374, 615
SstI	GAGCTC	1 cut(s)	510
TaaI	ACNGT	5 cut(s)	45, 68, 227, 319, 469
TaqI	TCGA	2 cut(s)	18, 217
TasI	AATT	4 cut(s)	80, 200, 212, 515
TscAI	CASTG	2 cut(s)	48, 472
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	3 cut(s)	323, 473, 482
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	236, 277, 508
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	48, 472
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	515
XspI	CTAG	2 cut(s)	374, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.