Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010489.1

Orthogroup ID

OG0006289

Physical Location & Seq

Genomic Coordinates Forward (+)

64616 .. 66450

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010489.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgggccgggttgacagttggcccaatatgactagacttgacccgtgtttgttctggttatttggaccatacgacgagtcgtccatcagatccttgggtgggttggtcgagaaaggaggagcagagcagggtgagtcgtcggaggaggaaggaatgccgaagagaacaacgcacacgtactcgagcgaggacgcagctccggatggacctgactctgatctcttcgtctattactgcaagcactgtggatctcacctcctcataactgatacccagttgcagaaaatgcccaaaaggaagacggacaaagcttatgtgttggacaagaccaaacaccttgcaaggctcaacattagtgagggtggaaaagttatactcaaaaggggagaagggaaattagagaagcagtttcggatgaactgtgttggttgcgaactctttgtcttctatcgctcagaagaagatttggaaggtgcttctttgatttatgttgttgatggtgctcttagcacagttgctgctgaaaccaatccacaggatgctcctgtgccgccttgcatatcacaaatagatggaggacttgttcaagtggctattgaagtagaagatcgtgcacaacgctcagcaatcacaagagtaaatgcggatgatgttagagttactgtagctgcacctgcagctcgaggagaagcaaataatgaacttttggaatttatgggaaaagtgttgggtcttagactaagccagatgactcttcagagaggttggaataacaaatcgaaacttcttgtggttgaagatttatctgctagacaagtatatgagaaactgctggaggctgtgcaaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167

Protein Analysis

283

Amino Acids

31.3

Weight (kDa)

5.22

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63440 AT5G63440 AT5G63440
fragaria_vesca	FvH4_7g00630
malus_domestica	MD02G1316100.v1.1 MD07G1005800.v1.1
prunus_persica	Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.4G287600_v2.0.a1 Prupe.4G287600_v2.0.a1
pyrus_communis	pycom02g26480 pycom07g00480
rosa_chinensis	RchiOBHm_Chr1g0314831 RchiOBHm_Chr7g0215371
rosa_laevigata	RLG00000030761
rosa_multiflora	Rmu_sc0002833.1_g000041 Rmu_sc0010489.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331850
rosa_rugosa	Rorug01G0002200 Rorug01G0002300
rosa_samantha	Rh1AG013100 Rh1BG004700 Rh1CG011600 Rh1DG006400 Rh7BG281400
rosa_wichuraiana	Rw1G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	682
Acc36I	ACCTGC	1 cut(s)	682
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	551, 644
AclWI	GGATC	2 cut(s)	84, 256
AcsI	RAATTY	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	740
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	99
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	3 cut(s)	587, 599, 797
AhdI	GACNNNNNGTC	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
AluBI	AGCT	4 cut(s)	197, 311, 668, 680
AluI	AGCT	4 cut(s)	197, 311, 668, 680
Alw21I	GWGCWC	2 cut(s)	505, 616
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	84, 256
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	2 cut(s)	181, 681
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	2 cut(s)	4, 20
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	4 cut(s)	194, 518, 668, 677
ApoI	RAATTY	1 cut(s)	710
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AspS9I	GGNCC	4 cut(s)	4, 21, 65, 206
AsuC2I	CCSGG	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	143, 245
AvaI	CYCGRG	2 cut(s)	181, 681
AvaII	GGWCC	2 cut(s)	65, 206
BaeGI	GKGCMC	1 cut(s)	616
BbsI	GAAGAC	2 cut(s)	305, 436
Bbv12I	GWGCWC	2 cut(s)	505, 616
BbvI	GCAGC	4 cut(s)	206, 505, 655, 689
BccI	CCATC	4 cut(s)	92, 197, 491, 566
BcnI	CCSGG	1 cut(s)	8
BfaI	CTAG	2 cut(s)	33, 810
BfmI	CTRYAG	2 cut(s)	663, 675
BfuAI	ACCTGC	1 cut(s)	682
BisI	GCNGC	5 cut(s)	195, 519, 551, 669, 678
BlpI	GCTNAGC	1 cut(s)	622
BlsI	GCNGC	5 cut(s)	196, 520, 552, 670, 679
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	2 cut(s)	65, 206
BmeRI	GACNNNNNGTC	1 cut(s)	79
BmeT110I	CYCGRG	2 cut(s)	181, 681
BmgT120I	GGNCC	4 cut(s)	4, 21, 65, 206
BmrFI	CCNGG	1 cut(s)	8
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	268
BpiI	GAAGAC	2 cut(s)	305, 436
Bpu1102I	GCTNAGC	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	274
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	4 cut(s)	208, 420, 544, 652
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	468, 636
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	4 cut(s)	132, 158, 248, 699
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	4 cut(s)	206, 505, 655, 689
BsgI	GTGCAG	1 cut(s)	654
BshFI	GGCC	2 cut(s)	6, 22
BsiHKAI	GWGCWC	2 cut(s)	505, 616
BsiHKCI	CYCGRG	2 cut(s)	181, 681
BsiSI	CCGG	2 cut(s)	7, 200
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	6, 22
BsoBI	CYCGRG	2 cut(s)	181, 681
Bsp1286I	GDGCHC	2 cut(s)	505, 616
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	89, 217, 248, 607
Bsp1720I	GCTNAGC	1 cut(s)	622
BspACI	CCGC	2 cut(s)	551, 644
BspANI	GGCC	2 cut(s)	6, 22
BspCNI	CTCAG	2 cut(s)	467, 635
BspEI	TCCGGA	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	679
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	2 cut(s)	84, 256
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	4 cut(s)	89, 217, 248, 607
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	5 cut(s)	17, 245, 422, 514, 664
Bst6I	CTCTTC	3 cut(s)	155, 227, 759
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	5 cut(s)	454, 506, 622, 734, 740
BstF5I	GGATG	4 cut(s)	208, 420, 544, 652
BstKTI	GATC	4 cut(s)	92, 220, 251, 610
BstMBI	GATC	4 cut(s)	89, 217, 248, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 674, 677
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	2 cut(s)	663, 675
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	4 cut(s)	206, 505, 655, 689
BstV2I	GAAGAC	2 cut(s)	305, 436
BstX2I	RGATCY	2 cut(s)	89, 248
BstYI	RGATCY	2 cut(s)	89, 248
BsuRI	GGCC	2 cut(s)	6, 22
BtsCI	GGATG	4 cut(s)	208, 420, 544, 652
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr13I	GGNCC	4 cut(s)	4, 21, 65, 206
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	178
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	5 cut(s)	454, 506, 622, 734, 740
DpnI	GATC	4 cut(s)	91, 219, 250, 609
DpnII	GATC	4 cut(s)	89, 217, 248, 607
DriI	GACNNNNNGTC	1 cut(s)	79
Eam1104I	CTCTTC	3 cut(s)	155, 227, 759
Eam1105I	GACNNNNNGTC	1 cut(s)	79
EarI	CTCTTC	3 cut(s)	155, 227, 759
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	2 cut(s)	65, 206
Eco57I	CTGAAG	1 cut(s)	740
Eco88I	CYCGRG	2 cut(s)	181, 681
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
Fnu4HI	GCNGC	5 cut(s)	195, 519, 551, 669, 678
FokI	GGATG	4 cut(s)	215, 427, 551, 659
Fsp4HI	GCNGC	5 cut(s)	195, 519, 551, 669, 678
FspBI	CTAG	2 cut(s)	33, 810
GluI	GCNGC	5 cut(s)	195, 519, 551, 669, 678
HaeIII	GGCC	2 cut(s)	6, 22
HapII	CCGG	2 cut(s)	7, 200
HgaI	GACGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	4 cut(s)	77, 134, 212, 751
HpaII	CCGG	2 cut(s)	7, 200
HphI	GGTGA	2 cut(s)	143, 245
Hpy166II	GTNNAC	2 cut(s)	13, 614
Hpy188I	TCNGA	6 cut(s)	89, 142, 217, 414, 457, 759
Hpy188III	TCNNGA	2 cut(s)	109, 200
Hpy8I	GTNNAC	2 cut(s)	13, 614
Hpy99I	CGWCG	2 cut(s)	77, 142
HpyAV	CCTTC	3 cut(s)	143, 383, 464
HpyCH4III	ACNGT	5 cut(s)	17, 245, 422, 514, 664
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	8 cut(s)	237, 280, 341, 558, 614, 671, 677, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 674, 677
HpyF3I	CTNAG	5 cut(s)	454, 506, 622, 734, 740
HpySE526I	ACGT	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	89, 217, 248, 607
LmnI	GCTCC	3 cut(s)	119, 202, 547
Lsp1109I	GCAGC	4 cut(s)	206, 505, 655, 689
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	2 cut(s)	33, 810
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	4 cut(s)	91, 219, 250, 609
MboI	GATC	4 cut(s)	89, 217, 248, 607
MboII	GAAGA	9 cut(s)	172, 214, 310, 436, 470, 473, 617, 746, 809
MflI	RGATCY	2 cut(s)	89, 248
MhlI	GDGCHC	2 cut(s)	505, 616
MluCI	AATT	2 cut(s)	395, 710
MlyI	GAGTC	4 cut(s)	86, 143, 206, 745
MmeI	TCCRAC	3 cut(s)	120, 300, 746
MroI	TCCGGA	1 cut(s)	199
MspI	CCGG	2 cut(s)	7, 200
MspR9I	CCNGG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	286, 674, 677
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	4 cut(s)	89, 217, 248, 607
PaeR7I	CTCGAG	2 cut(s)	181, 681
PaqCI	CACCTGC	1 cut(s)	682
PctI	GAATGC	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	196, 520, 552, 670, 679
PleI	GAGTC	4 cut(s)	85, 142, 206, 745
PpsI	GAGTC	4 cut(s)	85, 142, 206, 745
Ppu21I	YACGTR	1 cut(s)	177
PspPI	GGNCC	4 cut(s)	4, 21, 65, 206
PspXI	VCTCGAGB	2 cut(s)	181, 681
PstI	CTGCAG	1 cut(s)	679
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	2 cut(s)	89, 248
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SatI	GCNGC	5 cut(s)	195, 519, 551, 669, 678
Sau3AI	GATC	4 cut(s)	89, 217, 248, 607
Sau96I	GGNCC	4 cut(s)	4, 21, 65, 206
SchI	GAGTC	4 cut(s)	86, 143, 206, 745
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	2 cut(s)	505, 616
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	2 cut(s)	663, 675
Sfr274I	CTCGAG	2 cut(s)	181, 681
SinI	GGWCC	2 cut(s)	65, 206
SlaI	CTCGAG	2 cut(s)	181, 681
SmlI	CTYRAG	2 cut(s)	181, 681
SmoI	CTYRAG	2 cut(s)	181, 681
Sse9I	AATT	2 cut(s)	395, 710
SsiI	CCGC	2 cut(s)	551, 644
SspMI	CTAG	2 cut(s)	33, 810
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	5 cut(s)	17, 245, 422, 514, 664
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	108, 182, 682, 779
TasI	AATT	2 cut(s)	395, 710
TauI	GCSGC	1 cut(s)	553
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	4 cut(s)	194, 518, 668, 677
TspDTI	ATGAA	2 cut(s)	431, 714
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	65, 206
XapI	RAATTY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XhoI	CTCGAG	2 cut(s)	181, 681
XspI	CTAG	2 cut(s)	33, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.