Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006289

Physical Location & Seq

Genomic Coordinates Reverse (-)

17562050 .. 17564854

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G190000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCCGAAGAGAACAACACACACGTATTCGAGCGAGGACGCAGCTCCAGATGGACCTGACTCTGATATCTTCGTCTACTACTGCAAGCACTGTGGATCTCACCTACTCATAACTGATACCCAGTTGCAGAAAATGCCCAAAAGGAAGACTGACAAAGCTTATGTGTTGGACAAGAGCAAACATCTTGCAAGGCTTAACATTGCTGAGGCTGGAAAAGTTGTATTGAAAAGGGGTGAGGGGAAAATGGAGAAGCAATTTCGCATGAACTGTGTGGGTTGTGGACTCTTTGTTTTCTATCGCTCAGAAGAAGATTTGGAAGGTGCTTCTTTCATATATGTTGTTGATGGTGCTCTAAGCACGGTTGCTGCTGAAACCAACCCACAGGATGCTCCTGTGCCACCCTGCATTTCAAACCTAGATGGGGGACTCGTTCAAGTGGCTATAGAAGTGGAAGACCGTGCACAACGGTCAGCAATCACAAGAGTGAATGCTGATGATGTTAGAGTTACTGTGGCTGCACCTGCAGCTCGGGGAGAAGCAAACAATGAACTCTTGGAGTTCATGGGCAAAGTGTTGGGTCTGAGACTAAACCAGATGACTCTTCAGAGAGGGTGGAATAATAAATCGAAACTCCTTGTGGTGGAGGATTTGTCTGCTAGGCAAGTATATGAGAAACTTCTGGAGGCTGTTCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167

Protein Analysis

233

Amino Acids

25.66

Weight (kDa)

6.45

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63440 AT5G63440 AT5G63440
fragaria_vesca	FvH4_7g00630
malus_domestica	MD02G1316100.v1.1 MD07G1005800.v1.1
prunus_persica	Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.4G287600_v2.0.a1 Prupe.4G287600_v2.0.a1
pyrus_communis	pycom02g26480 pycom07g00480
rosa_chinensis	RchiOBHm_Chr1g0314831 RchiOBHm_Chr7g0215371
rosa_laevigata	RLG00000030761
rosa_multiflora	Rmu_sc0002833.1_g000041 Rmu_sc0010489.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331850
rosa_rugosa	Rorug01G0002200 Rorug01G0002300
rosa_samantha	Rh1AG013100 Rh1BG004700 Rh1CG011600 Rh1DG006400 Rh7BG281400
rosa_wichuraiana	Rw1G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	421, 640
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	4 cut(s)	226, 411, 434, 692
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	44, 158, 527
AluI	AGCT	3 cut(s)	44, 158, 527
Alw21I	GWGCWC	2 cut(s)	352, 463
Alw26I	GTCTC	1 cut(s)	577
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	528
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	41, 365, 515, 524
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	92, 245
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	152, 459
Bbv12I	GWGCWC	2 cut(s)	352, 463
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	53, 352, 502, 536
BccI	CCATC	3 cut(s)	44, 338, 413
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	416, 657
BfmI	CTRYAG	2 cut(s)	441, 522
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	4 cut(s)	42, 366, 516, 525
BlsI	GCNGC	4 cut(s)	43, 367, 517, 526
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	152, 459
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 640
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	421, 640
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	195, 315, 572
BseNI	ACTGG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	4 cut(s)	53, 352, 502, 536
BsgI	GTGCAG	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	352, 463
BsiHKCI	CYCGRG	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	421, 640
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	528
Bsp1286I	GDGCHC	2 cut(s)	352, 463
Bsp143I	GATC	1 cut(s)	95
BspCNI	CTCAG	3 cut(s)	196, 314, 573
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	95
Bst4CI	ACNGT	6 cut(s)	92, 269, 361, 458, 468, 511
Bst6I	CTCTTC	2 cut(s)	2, 606
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	4 cut(s)	204, 301, 353, 581
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
BstSFI	CTRYAG	2 cut(s)	441, 522
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	4 cut(s)	53, 352, 502, 536
BstV2I	GAAGAC	2 cut(s)	152, 459
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	47
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	2 cut(s)	262, 562
CviJI	RGCY	8 cut(s)	44, 158, 193, 209, 440, 515, 527, 686
CviKI_1	RGCY	8 cut(s)	44, 158, 193, 209, 440, 515, 527, 686
DdeI	CTNAG	4 cut(s)	204, 301, 353, 581
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
Eam1104I	CTCTTC	2 cut(s)	2, 606
EarI	CTCTTC	2 cut(s)	2, 606
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	528
EcoRV	GATATC	1 cut(s)	67
FaeI	CATG	2 cut(s)	265, 565
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	2 cut(s)	261, 561
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	42, 366, 516, 525
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	4 cut(s)	42, 366, 516, 525
FspBI	CTAG	2 cut(s)	416, 657
GluI	GCNGC	4 cut(s)	42, 366, 516, 525
GsuI	CTGGAG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	265, 565
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	4 cut(s)	59, 282, 426, 598
HphI	GGTGA	2 cut(s)	92, 245
Hpy166II	GTNNAC	3 cut(s)	76, 281, 461
Hpy188I	TCNGA	4 cut(s)	64, 304, 582, 606
Hpy188III	TCNNGA	2 cut(s)	47, 680
Hpy8I	GTNNAC	3 cut(s)	76, 281, 461
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	6 cut(s)	92, 269, 361, 458, 468, 511
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	7 cut(s)	84, 127, 188, 405, 461, 518, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
HpyF3I	CTNAG	4 cut(s)	204, 301, 353, 581
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	265, 565
Kzo9I	GATC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	49, 394
Lsp1109I	GCAGC	4 cut(s)	53, 352, 502, 536
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	416, 657
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	7 cut(s)	19, 61, 157, 317, 320, 464, 593
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	352, 463
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	4 cut(s)	53, 276, 420, 592
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	28, 199, 229, 602, 637, 676
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	493
MwoI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	2 cut(s)	265, 565
OliI	CACNNNNGTG	1 cut(s)	482
PaqCI	CACCTGC	1 cut(s)	529
PctI	GAATGC	1 cut(s)	493
PkrI	GCNGC	4 cut(s)	43, 367, 517, 526
PleI	GAGTC	4 cut(s)	53, 276, 420, 592
PpsI	GAGTC	4 cut(s)	53, 276, 420, 592
Ppu21I	YACGTR	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	4 cut(s)	42, 366, 516, 525
Sau3AI	GATC	1 cut(s)	95
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	4 cut(s)	53, 276, 420, 592
SduI	GDGCHC	2 cut(s)	352, 463
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	2 cut(s)	441, 522
SinI	GGWCC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	1 cut(s)	254
SspMI	CTAG	2 cut(s)	416, 657
TaaI	ACNGT	6 cut(s)	92, 269, 361, 458, 468, 511
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	29, 626
TasI	AATT	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	4 cut(s)	41, 365, 515, 524
TspDTI	ATGAA	4 cut(s)	278, 319, 550, 561
TspRI	CASTG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	2 cut(s)	416, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.