Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006289

Physical Location & Seq

Genomic Coordinates Reverse (-)

460509 .. 462751

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCCGAAGAGAACAACACACACGTACTCGAGCGAGGACGCAGCTCCGGATGGACCCGACTCTGACCTCTTCGTTTATTACTGCAAGCACTGTGGATCCCACCTCCTCATAACTGATACCCAGTTGCAGAAAATGCCGAAAAGGAAGACGGACAAGGCTTATGTGTTGGACAAGAGCAAACACCTTGCAAGGCTCAACATTGCTGAGGCTGGAAAGGTTTTATTGAAAAGGGGGGAAGGGAAATTGGAGAAGCAGTTTCGAATGAACTGTGTGGGTTGTGGGCTCTTTGTTTTCTACCGCTCGGAAGAAGACTTGGAAGGTGCTTCTTTCATTTATGTTGTTGATGGTTCTCTAAGCACAGTTGCTGCTGAAACCAACCCACAGGATGCTCCTGTGCCGCCCTGTATATCAAACCTAGAAGGGGGACTTGTTCAAGTTGCTATAGAAGTGGAAGATCGTGCACAACGGTCAGCAATCACAAGAGTGAATGCTGACGATGTTAGAGTCACTGTAGCTGCACCTGCTGCTCGGGGAGAAGCAAACAATGAGCTCTTGGAATTCATGGCCAAAGTGTTGGGTCTGAGACTAAGCCAGATGACTCTTCAGAGAGGGTGGAATAACAAATCAAAACTCCTTGTGGTAGAGGATTTGTCTGCTAGGCAAGTATATGAGAAACTTCTGGAGGCTGTGCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167

Protein Analysis

233

Amino Acids

25.67

Weight (kDa)

6.45

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63440 AT5G63440 AT5G63440
fragaria_vesca	FvH4_7g00630
malus_domestica	MD02G1316100.v1.1 MD07G1005800.v1.1
prunus_persica	Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.4G287600_v2.0.a1 Prupe.4G287600_v2.0.a1
pyrus_communis	pycom02g26480 pycom07g00480
rosa_chinensis	RchiOBHm_Chr1g0314831 RchiOBHm_Chr7g0215371
rosa_laevigata	RLG00000030761
rosa_multiflora	Rmu_sc0002833.1_g000041 Rmu_sc0010489.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331850
rosa_rugosa	Rorug01G0002200 Rorug01G0002300
rosa_samantha	Rh1AG013100 Rh1BG004700 Rh1CG011600 Rh1DG006400 Rh7BG281400
rosa_wichuraiana	Rw1G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	529
AccBSI	CCGCTC	1 cut(s)	300
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	2 cut(s)	298, 398
AclWI	GGATC	2 cut(s)	90, 103
AcoI	YGGCCR	1 cut(s)	564
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	226, 434
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	44, 515, 550
AluI	AGCT	3 cut(s)	44, 515, 550
Alw21I	GWGCWC	2 cut(s)	463, 552
Alw26I	GTCTC	1 cut(s)	577
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	90, 103
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	2 cut(s)	28, 528
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	1 cut(s)	564
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	41, 365, 515, 524
ApoI	RAATTY	1 cut(s)	557
AspS9I	GGNCC	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	259
AvaI	CYCGRG	2 cut(s)	28, 528
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	95
BanII	GRGCYC	2 cut(s)	285, 552
BbsI	GAAGAC	2 cut(s)	152, 315
Bbv12I	GWGCWC	2 cut(s)	463, 552
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	53, 352, 502, 511
BccI	CCATC	2 cut(s)	44, 338
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	416, 657
BfmI	CTRYAG	2 cut(s)	441, 510
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	5 cut(s)	42, 366, 398, 516, 525
BlsI	GCNGC	5 cut(s)	43, 367, 399, 517, 526
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	2 cut(s)	28, 528
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	55, 97
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	152, 315
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	46
BseGI	GGATG	2 cut(s)	55, 391
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	195, 572
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	95
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	4 cut(s)	53, 352, 502, 511
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	566
BsiHKAI	GWGCWC	2 cut(s)	463, 552
BsiHKCI	CYCGRG	2 cut(s)	28, 528
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	566
BsoBI	CYCGRG	2 cut(s)	28, 528
Bsp119I	TTCGAA	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	285, 463, 552
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	95, 454
BspACI	CCGC	2 cut(s)	298, 398
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	196, 573
BspEI	TCCGGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	55, 97
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	90, 103
BspT104I	TTCGAA	1 cut(s)	259
BsrBI	CCGCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	95, 454
Bst4CI	ACNGT	5 cut(s)	92, 269, 361, 468, 511
Bst6I	CTCTTC	3 cut(s)	2, 74, 606
BstAPI	GCANNNNNTGC	2 cut(s)	133, 524
BstBAI	YACGTR	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	4 cut(s)	204, 353, 581, 587
BstF5I	GGATG	2 cut(s)	55, 391
BstKTI	GATC	2 cut(s)	98, 457
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	2 cut(s)	95, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
BstSFI	CTRYAG	2 cut(s)	441, 510
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	4 cut(s)	53, 352, 502, 511
BstV2I	GAAGAC	2 cut(s)	152, 315
BstX2I	RGATCY	1 cut(s)	95
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	55, 391
BtsIMutI	CAGTG	2 cut(s)	88, 507
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	1 cut(s)	562
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	4 cut(s)	204, 353, 581, 587
DpnI	GATC	2 cut(s)	97, 456
DpnII	GATC	2 cut(s)	95, 454
EaeI	YGGCCR	1 cut(s)	564
Eam1104I	CTCTTC	3 cut(s)	2, 74, 606
EarI	CTCTTC	3 cut(s)	2, 74, 606
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	2 cut(s)	285, 552
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	28, 528
EcoICRI	GAGCTC	1 cut(s)	550
EcoRI	GAATTC	1 cut(s)	557
EcoT38I	GRGCYC	2 cut(s)	285, 552
FaeI	CATG	1 cut(s)	565
FaiI	YATR	8 cut(s)	110, 162, 336, 407, 443, 563, 667, 669
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	42, 366, 398, 516, 525
FokI	GGATG	2 cut(s)	62, 398
FriOI	GRGCYC	2 cut(s)	285, 552
Fsp4HI	GCNGC	5 cut(s)	42, 366, 398, 516, 525
FspBI	CTAG	2 cut(s)	416, 657
GluI	GCNGC	5 cut(s)	42, 366, 398, 516, 525
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	565
HinfI	GANTC	3 cut(s)	59, 504, 598
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	4 cut(s)	64, 304, 582, 606
Hpy188III	TCNNGA	2 cut(s)	47, 680
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	230, 311, 413
HpyCH4III	ACNGT	5 cut(s)	92, 269, 361, 468, 511
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	6 cut(s)	84, 127, 188, 461, 518, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
HpyF3I	CTNAG	4 cut(s)	204, 353, 581, 587
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	565
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	95, 454
LmnI	GCTCC	2 cut(s)	49, 394
LpnPI	CCDG	9 cut(s)	60, 134, 195, 368, 405, 415, 534, 605, 665
Lsp1109I	GCAGC	4 cut(s)	53, 352, 502, 511
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	416, 657
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	97, 456
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	2 cut(s)	95, 454
MboII	GAAGA	7 cut(s)	19, 61, 157, 317, 320, 464, 593
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	3 cut(s)	285, 463, 552
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	2 cut(s)	242, 557
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	3 cut(s)	53, 513, 592
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	28, 77, 113, 116, 199, 602, 637, 676
Mox20I	TGGCCA	1 cut(s)	566
MroI	TCCGGA	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	493
MwoI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
NdeII	GATC	2 cut(s)	95, 454
NlaIII	CATG	1 cut(s)	565
NlaIV	GGNNCC	2 cut(s)	55, 97
NmuCI	GTSAC	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	28
PaqCI	CACCTGC	1 cut(s)	529
PctI	GAATGC	1 cut(s)	493
PkrI	GCNGC	5 cut(s)	43, 367, 399, 517, 526
PleI	GAGTC	3 cut(s)	53, 512, 592
PpsI	GAGTC	3 cut(s)	53, 512, 592
Ppu21I	YACGTR	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	55, 97
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	552
SatI	GCNGC	5 cut(s)	42, 366, 398, 516, 525
Sau3AI	GATC	2 cut(s)	95, 454
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	3 cut(s)	53, 513, 592
SduI	GDGCHC	3 cut(s)	285, 463, 552
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	2 cut(s)	441, 510
Sfr274I	CTCGAG	1 cut(s)	28
SfuI	TTCGAA	1 cut(s)	259
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	242, 557
SsiI	CCGC	2 cut(s)	298, 398
SspMI	CTAG	2 cut(s)	416, 657
SstI	GAGCTC	1 cut(s)	552
TaaI	ACNGT	5 cut(s)	92, 269, 361, 468, 511
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	29, 259
TasI	AATT	2 cut(s)	242, 557
TauI	GCSGC	1 cut(s)	400
TscAI	CASTG	2 cut(s)	95, 514
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	4 cut(s)	41, 365, 515, 524
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	3 cut(s)	278, 319, 550
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	95, 514
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	557
XhoI	CTCGAG	1 cut(s)	28
XspI	CTAG	2 cut(s)	416, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.