Rh7BG281400

DUF167

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006289
Physical Location & Seq
Forward (+)
26293956 .. 26294615
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG281400.1

Sequence Viewer

Length: 351 bp
ATGACAGACAAAGCTCATATCTTGGACAAGACCAAACACCTTGCAATGCTAAAAATTAGTGAGGGTGGAAAAAAAAAGATTTGGAATTTACTGCTTTCATTTATGTTATTGACGGTGCTTCGTGCTCCTAGCACAGTTGCTGCTGAAACCAACCCACATGATGCTCCCGTGTCACCCGGCATATCACAAATAGATGGAGGACTTGTTCAAGTAGCTATAGAAGTGGAAGATCGTGCACAACGCTCATTATTCACAAGAGTCAATGCATATGATGTTAAAGTTACTGTTGCAATAACGACAGCTCGAGGAGAAGCAAATAATAAATTTTTGGAATTTATGGGTGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

116

Amino Acids

12.66

Weight (kDa)

9.05

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 85, 323, 332
AgsI TTSAA 1 cut(s) 209
AloI GAACNNNNNNTCC 2 cut(s) 189, 221
AluBI AGCT 3 cut(s) 14, 215, 302
AluI AGCT 3 cut(s) 14, 215, 302
Alw21I GWGCWC 2 cut(s) 127, 238
Alw44I GTGCAC 1 cut(s) 234
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 303
ApaLI GTGCAC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 3 cut(s) 85, 323, 332
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 303
BaeGI GKGCMC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 127, 238
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 177
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bse3DI GCAATG 2 cut(s) 51, 351
BseMI GCAATG 2 cut(s) 51, 351
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 127, 238
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 2 cut(s) 127, 238
Bsp143I GATC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 51, 351
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 115, 136, 286
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 140
CviAII CATG 1 cut(s) 158
CviJI RGCY 3 cut(s) 14, 215, 302
CviKI_1 RGCY 3 cut(s) 14, 215, 302
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 268
FaeI CATG 1 cut(s) 161
FaiI YATR 8 cut(s) 18, 104, 159, 182, 218, 268, 270, 338
FatI CATG 1 cut(s) 157
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 141
HapII CCGG 1 cut(s) 177
Hin1II CATG 1 cut(s) 161
HinfI GANTC 1 cut(s) 258
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 236
HpyCH4III ACNGT 3 cut(s) 115, 136, 286
HpyCH4V TGCA 5 cut(s) 44, 236, 266, 290, 344
Hsp92II CATG 1 cut(s) 161
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 130, 169
LpnPI CCDG 1 cut(s) 190
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 171, 280
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 239
MhlI GDGCHC 2 cut(s) 127, 238
MluCI AATT 4 cut(s) 54, 85, 323, 332
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 3 cut(s) 55, 191, 299
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 1 cut(s) 276
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 177
NciI CCSGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 268
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 171
NsiI ATGCAT 1 cut(s) 268
PaeR7I CTCGAG 1 cut(s) 303
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PspXI VCTCGAGB 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 2 cut(s) 127, 238
SetI ASST 4 cut(s) 16, 42, 217, 304
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 303
SlaI CTCGAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 4 cut(s) 54, 85, 323, 332
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 115, 136, 286
TaqI TCGA 1 cut(s) 304
TasI AATT 4 cut(s) 54, 85, 323, 332
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 171
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 87
VneI GTGCAC 1 cut(s) 234
XapI RAATTY 3 cut(s) 85, 323, 332
XhoI CTCGAG 1 cut(s) 303
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.