Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006289

Physical Location & Seq

Genomic Coordinates Reverse (-)

1782866 .. 1784522

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG011600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCGAAGAGAACAACGCACACGTACTCGAGCGAGGACGCAGCTCCAGATGGACCTGACTCTGATCTCTTCGTCTATTACTGCAAGCACTGTGGATCTCACCTCCTCATAACTGATACCCAGTTGCAGAAAATGCCCAAAAGGAAGACGGACAAAGCTTATGTGTTGGACAAGACCAAACACCTTGCAAGGCTCAACATTAGTGAGGGTGGAAAAGTTATACTCAAAAGGAGTGAAGGGAAATTAGAGAAGCAGTTTCGTATGAACTGTGTTGGTTGCGAACTCTTTGTCTTCTATCGCTCAGAAGAAGATTTGGAAGGTGCTTCTTTGATTTATGTTGTTGACGGTGCTCTTAGCACAGTTGCTGCTGAAACCAATCCACAGGATGCTCCTGTGCCACCCTGCATATCACAAATAGATGGAGGACTTGTTCAAGTGGCTATTGAAGTGGAAGATCGTGCACAACGCTCAGCAATCACAAGAGTAAATGCCGATGATGTTAGAGTTACTGTAGCTGCACCTGCAGCTCGAGGAGAAGCAAATAATGAACTCTTGGAATTTATGGGAAAAGTGTTGGGTCTCAGACTAAGCCAGATGACTCTTCAGAGAGGATGGAATAACAAATCGAAACTTCTTGTGGTAAGTCAAACACTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167

Protein Analysis

219

Amino Acids

24.21

Weight (kDa)

7.62

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STEEP1	PF25809	20 - 125	2.4e-34	STEEP1 domain
DUF167	PF02594	144 - 214	8.8e-18	Uncharacterised ACR, YggU family COG1872

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63440 AT5G63440 AT5G63440
fragaria_vesca	FvH4_7g00630
malus_domestica	MD02G1316100.v1.1 MD07G1005800.v1.1
prunus_persica	Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.1G190000_v2.0.a1 Prupe.4G287600_v2.0.a1 Prupe.4G287600_v2.0.a1
pyrus_communis	pycom02g26480 pycom07g00480
rosa_chinensis	RchiOBHm_Chr1g0314831 RchiOBHm_Chr7g0215371
rosa_laevigata	RLG00000030761
rosa_multiflora	Rmu_sc0002833.1_g000041 Rmu_sc0010489.1_g000014
rosa_roxburghii	Rroxscaffold_4G00331850
rosa_rugosa	Rorug01G0002200 Rorug01G0002300
rosa_samantha	Rh1AG013100 Rh1BG004700 Rh1CG011600 Rh1DG006400 Rh7BG281400
rosa_wichuraiana	Rw1G000570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	529
AclWI	GGATC	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	434, 446
AloI	GAACNNNNNNTCC	2 cut(s)	414, 446
AluBI	AGCT	4 cut(s)	44, 158, 515, 527
AluI	AGCT	4 cut(s)	44, 158, 515, 527
Alw21I	GWGCWC	2 cut(s)	352, 463
Alw26I	GTCTC	1 cut(s)	584
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	103
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	2 cut(s)	28, 528
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	41, 365, 515, 524
ApoI	RAATTY	1 cut(s)	557
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	2 cut(s)	28, 528
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	463
BbsI	GAAGAC	2 cut(s)	152, 283
Bbv12I	GWGCWC	2 cut(s)	352, 463
BbvI	GCAGC	4 cut(s)	53, 352, 502, 536
BccI	CCATC	3 cut(s)	44, 413, 606
BcoDI	GTCTC	1 cut(s)	584
BfmI	CTRYAG	2 cut(s)	510, 522
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	4 cut(s)	42, 366, 516, 525
BlpI	GCTNAGC	1 cut(s)	469
BlsI	GCNGC	4 cut(s)	43, 367, 517, 526
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	2 cut(s)	28, 528
BmgT120I	GGNCC	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	152, 283
BpmI	CTGGAG	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	469
BsaAI	YACGTR	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bse1I	ACTGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	391, 617
BseMII	CTCAG	3 cut(s)	315, 483, 595
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	95, 546
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	4 cut(s)	53, 352, 502, 536
BsgI	GTGCAG	1 cut(s)	501
BsiHKAI	GWGCWC	2 cut(s)	352, 463
BsiHKCI	CYCGRG	2 cut(s)	28, 528
BsmAI	GTCTC	1 cut(s)	584
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	2 cut(s)	28, 528
Bsp1286I	GDGCHC	2 cut(s)	352, 463
Bsp143I	GATC	3 cut(s)	64, 95, 454
Bsp1720I	GCTNAGC	1 cut(s)	469
BspCNI	CTCAG	3 cut(s)	314, 482, 594
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	64, 95, 454
Bst4CI	ACNGT	5 cut(s)	92, 269, 347, 361, 511
Bst6I	CTCTTC	3 cut(s)	2, 74, 606
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	5 cut(s)	301, 353, 469, 581, 587
BstF5I	GGATG	2 cut(s)	391, 617
BstKTI	GATC	3 cut(s)	67, 98, 457
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	3 cut(s)	64, 95, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
BstSFI	CTRYAG	2 cut(s)	510, 522
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	4 cut(s)	53, 352, 502, 536
BstV2I	GAAGAC	2 cut(s)	152, 283
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	391, 617
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	53
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviJI	RGCY	7 cut(s)	44, 158, 193, 440, 515, 527, 591
CviKI_1	RGCY	7 cut(s)	44, 158, 193, 440, 515, 527, 591
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	5 cut(s)	301, 353, 469, 581, 587
DpnI	GATC	3 cut(s)	66, 97, 456
DpnII	GATC	3 cut(s)	64, 95, 454
Eam1104I	CTCTTC	3 cut(s)	2, 74, 606
EarI	CTCTTC	3 cut(s)	2, 74, 606
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	2 cut(s)	28, 528
FaiI	YATR	7 cut(s)	110, 162, 221, 263, 336, 407, 563
Fnu4HI	GCNGC	4 cut(s)	42, 366, 516, 525
FokI	GGATG	2 cut(s)	398, 624
Fsp4HI	GCNGC	4 cut(s)	42, 366, 516, 525
GluI	GCNGC	4 cut(s)	42, 366, 516, 525
GsuI	CTGGAG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	2 cut(s)	59, 598
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	343, 461
Hpy188I	TCNGA	4 cut(s)	64, 304, 584, 606
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	2 cut(s)	343, 461
HpyAV	CCTTC	2 cut(s)	230, 311
HpyCH4III	ACNGT	5 cut(s)	92, 269, 347, 361, 511
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	7 cut(s)	84, 127, 188, 405, 461, 518, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
HpyF3I	CTNAG	5 cut(s)	301, 353, 469, 581, 587
HpySE526I	ACGT	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	64, 95, 454
LmnI	GCTCC	2 cut(s)	49, 394
LpnPI	CCDG	8 cut(s)	60, 69, 134, 368, 405, 415, 534, 605
Lsp1109I	GCAGC	4 cut(s)	53, 352, 502, 536
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	3 cut(s)	66, 97, 456
MboI	GATC	3 cut(s)	64, 95, 454
MboII	GAAGA	8 cut(s)	19, 61, 157, 283, 317, 320, 464, 593
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	352, 463
MluCI	AATT	2 cut(s)	242, 557
MlyI	GAGTC	2 cut(s)	53, 592
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	7 cut(s)	28, 113, 116, 199, 416, 524, 602
MwoI	GCNNNNNNNGC	3 cut(s)	133, 521, 524
NdeII	GATC	3 cut(s)	64, 95, 454
PaeR7I	CTCGAG	2 cut(s)	28, 528
PaqCI	CACCTGC	1 cut(s)	529
PkrI	GCNGC	4 cut(s)	43, 367, 517, 526
PleI	GAGTC	2 cut(s)	53, 592
PpsI	GAGTC	2 cut(s)	53, 592
Ppu21I	YACGTR	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	53
PspXI	VCTCGAGB	2 cut(s)	28, 528
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SatI	GCNGC	4 cut(s)	42, 366, 516, 525
Sau3AI	GATC	3 cut(s)	64, 95, 454
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	53, 592
SduI	GDGCHC	2 cut(s)	352, 463
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	2 cut(s)	510, 522
Sfr274I	CTCGAG	2 cut(s)	28, 528
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	2 cut(s)	28, 528
SmlI	CTYRAG	2 cut(s)	28, 528
SmoI	CTYRAG	2 cut(s)	28, 528
Sse9I	AATT	2 cut(s)	242, 557
TaaI	ACNGT	5 cut(s)	92, 269, 347, 361, 511
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	29, 529, 626
TasI	AATT	2 cut(s)	242, 557
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	4 cut(s)	41, 365, 515, 524
TspDTI	ATGAA	2 cut(s)	278, 561
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	557
XhoI	CTCGAG	2 cut(s)	28, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.