Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010306

Physical Location & Seq

Genomic Coordinates Forward (+)

25677072 .. 25678702

Gene Structure 1631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGAGCAATTCGGCGGGAGCGATGAGAGATGGAAAGGATCATTGGAGAATATAACGGAGATGGCATCGAATCTCGATTCGCTTCAGAAACTTCTCCTCAAGAAAGCAGTCTTCGTTGAAGAAGACACTTTCTCTAGAGCTTCTCTCGTCTCCGAGCAAGCCCGAACAATCAAGGTTCTTGAGCAAAGAGTACAAACACTAGAAAGAGAACTAGATGCTGCCATTACAGCTGCTGCTCATGCTCGGTCTGAGAAACGCCAAGCTGAGTCCTCTCAAAAGGCTGCTGAATCACGTGCCCAAGATGTCACAAAAGAGCTTGAAAACACCACAAAGGTTTTCAAGCTGCATATGGAAGAGCTTCGAGGAATGCAAGAACAGATATCCAAACGCGATAACGAGATCAAACTCTTAGAAGCTATAATCCAAACGCTCGGCGGCAAAGAGCGGTTGGGAAAAAGCGACGTGAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

5.42

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64180 AT5G64180
fragaria_vesca	FvH4_1g26050
malus_domestica	MD00G1096800.v1.1 MD05G1163000.v1.1 MD05G1163200.v1.1 MD10G1152800.v1.1
prunus_persica	Prupe.8G061800_v2.0.a1 Prupe.8G061800_v2.0.a1
pyrus_communis	pycom05g15270 pycom10g13190
rosa_chinensis	RchiOBHm_Chr3g0485521
rosa_laevigata	RLG00000023146
rosa_multiflora	Rmu_sc0001272.1_g000017
rosa_roxburghii	Rroxscaffold_6G00396680 Rroxscaffold_6G00396960
rosa_rugosa	Rorug03G0219500 Rorug03G0219600 Rorug03G0219700
rosa_samantha	Rh3BG303900
rosa_wichuraiana	Rw3G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	448
AccII	CGCG	1 cut(s)	393
AciI	CCGC	3 cut(s)	18, 438, 448
AclWI	GGATC	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	71
AcvI	CACGTG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	195
AgsI	TTSAA	3 cut(s)	122, 323, 343
AjiI	CACGTC	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	7 cut(s)	143, 233, 266, 319, 346, 361, 419
AluI	AGCT	7 cut(s)	143, 233, 266, 319, 346, 361, 419
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	49
AlwNI	CAGNNNCTG	1 cut(s)	236
ApeKI	GCWGC	5 cut(s)	221, 233, 236, 284, 346
Asp700I	GAANNNNTTC	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	301
BbrPI	CACGTG	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	106, 132
BbvI	GCAGC	5 cut(s)	208, 220, 223, 271, 333
BccI	CCATC	2 cut(s)	27, 58
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	3 cut(s)	138, 203, 215
BisI	GCNGC	6 cut(s)	222, 234, 237, 285, 347, 439
BlsI	GCNGC	6 cut(s)	223, 235, 238, 286, 348, 440
BmgBI	CACGTC	1 cut(s)	466
BmsI	GCATC	2 cut(s)	77, 208
BpiI	GAAGAC	2 cut(s)	106, 132
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpuEI	CTTGAG	2 cut(s)	86, 203
BsaAI	YACGTR	1 cut(s)	296
BseMII	CTCAG	2 cut(s)	243, 258
BseRI	GAGGAG	2 cut(s)	20, 89
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	5 cut(s)	208, 220, 223, 271, 333
Bsh1236I	CGCG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	41, 402
BspACI	CCGC	3 cut(s)	18, 438, 448
BspCNI	CTCAG	2 cut(s)	244, 259
BspFNI	CGCG	1 cut(s)	393
BspPI	GGATC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	351
BsrBI	CCGCTC	1 cut(s)	448
BssMI	GATC	2 cut(s)	41, 402
Bst6I	CTCTTC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	252, 267, 412
BstFNI	CGCG	1 cut(s)	393
BstKTI	GATC	2 cut(s)	44, 405
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	41, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 242
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	5 cut(s)	208, 220, 223, 271, 333
BstV2I	GAAGAC	2 cut(s)	106, 132
BtgZI	GCGATG	1 cut(s)	39
BtrI	CACGTC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	9 cut(s)	143, 164, 233, 266, 284, 319, 346, 361, 419
CviKI_1	RGCY	9 cut(s)	143, 164, 233, 266, 284, 319, 346, 361, 419
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	252, 267, 412
DpnI	GATC	2 cut(s)	43, 404
DpnII	GATC	2 cut(s)	41, 402
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	71
Eco72I	CACGTG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	1 cut(s)	245
FaiI	YATR	5 cut(s)	56, 243, 351, 353, 422
FatI	CATG	1 cut(s)	241
FauI	CCCGC	1 cut(s)	11
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	6 cut(s)	222, 234, 237, 285, 347, 439
Fsp4HI	GCNGC	6 cut(s)	222, 234, 237, 285, 347, 439
FspBI	CTAG	3 cut(s)	138, 203, 215
GluI	GCNGC	6 cut(s)	222, 234, 237, 285, 347, 439
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	4 cut(s)	73, 80, 269, 290
Hpy188I	TCNGA	3 cut(s)	90, 157, 253
Hpy188III	TCNNGA	4 cut(s)	77, 103, 138, 182
Hpy99I	CGWCG	1 cut(s)	467
HpyCH4IV	ACGT	2 cut(s)	295, 465
HpyCH4V	TGCA	2 cut(s)	349, 373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 242
HpyF3I	CTNAG	3 cut(s)	252, 267, 412
HpySE526I	ACGT	2 cut(s)	295, 465
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	41, 402
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	7, 21
Lsp1109I	GCAGC	5 cut(s)	208, 220, 223, 271, 333
LweI	GCATC	2 cut(s)	77, 208
MaeI	CTAG	3 cut(s)	138, 203, 215
MaeII	ACGT	2 cut(s)	295, 465
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	2 cut(s)	43, 404
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	2 cut(s)	41, 402
MboII	GAAGA	4 cut(s)	106, 134, 137, 368
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	110, 283, 359
MroXI	GAANNNNTTC	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	375
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	230, 242
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	2 cut(s)	41, 402
NlaIII	CATG	1 cut(s)	245
NmeAIII	GCCGAG	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	73, 80, 290
PkrI	GCNGC	6 cut(s)	223, 235, 238, 286, 348, 440
PleI	GAGTC	1 cut(s)	277
PmaCI	CACGTG	1 cut(s)	296
PmlI	CACGTG	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	296
PspCI	CACGTG	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	351
SatI	GCNGC	6 cut(s)	222, 234, 237, 285, 347, 439
Sau3AI	GATC	2 cut(s)	41, 402
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	77, 208
SmlI	CTYRAG	2 cut(s)	101, 182
SmoI	CTYRAG	2 cut(s)	101, 182
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	3 cut(s)	18, 438, 448
SspMI	CTAG	3 cut(s)	138, 203, 215
TaiI	ACGT	2 cut(s)	298, 468
TaqI	TCGA	3 cut(s)	71, 78, 364
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	11
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	3 cut(s)	73, 80, 290
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	5 cut(s)	221, 233, 236, 284, 346
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	3 cut(s)	138, 203, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.