Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010306

Physical Location & Seq

Genomic Coordinates Forward (+)

17962768 .. 17965177

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGGACAAGGGCAAAGGAAGCGAGAGATTTGGGGGAGCCATAGCCAATCTGACCGAGATGGCTCTCAATTTGGAGTCACTCCAGAAGCTGCTCCTCAAGAAGGCCGTCTTTGTCGATGAAGAGACCTTCACCAAAGCCTCACTTTGTTCTGAACAAGCTCGTACCATTAAGGTTCTTGAACAAAGGGTTGAAACTTTGGAACGAGAACTTGATGCTGCCATTACAGCTGCTGCACGTGCTCGTTCAGAAAAACGCCAGGCTGAGGCAGCAGAGAAGGCTGCTGAGTTACGAGCACAGGAAGTTACAAAAGAGCTCGAGAACACCTCAAAGGTATTTGAGCTGCACATGGAGGAGTTGCGTGCAAAGCAACAAGAAATCTCTAAGCGTGATAAGGATATCAAACTTTTGGAAGCTATAATTCAGACACTTGGTGGAAACGAAGCGCATAAAAGAACTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.28

Weight (kDa)

5.87

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64180 AT5G64180
fragaria_vesca	FvH4_1g26050
malus_domestica	MD00G1096800.v1.1 MD05G1163000.v1.1 MD05G1163200.v1.1 MD10G1152800.v1.1
prunus_persica	Prupe.8G061800_v2.0.a1 Prupe.8G061800_v2.0.a1
pyrus_communis	pycom05g15270 pycom10g13190
rosa_chinensis	RchiOBHm_Chr3g0485521
rosa_laevigata	RLG00000023146
rosa_multiflora	Rmu_sc0001272.1_g000017
rosa_roxburghii	Rroxscaffold_6G00396680 Rroxscaffold_6G00396960
rosa_rugosa	Rorug03G0219500 Rorug03G0219600 Rorug03G0219700
rosa_samantha	Rh3BG303900
rosa_wichuraiana	Rw3G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	103, 265
AgsI	TTSAA	2 cut(s)	182, 194
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	6 cut(s)	91, 161, 230, 316, 343, 416
AluI	AGCT	6 cut(s)	91, 161, 230, 316, 343, 416
Alw21I	GWGCWC	3 cut(s)	244, 298, 318
Alw26I	GTCTC	1 cut(s)	119
AlwNI	CAGNNNCTG	2 cut(s)	91, 233
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	7 cut(s)	91, 218, 230, 233, 269, 281, 343
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	318
BbrPI	CACGTG	1 cut(s)	239
Bbv12I	GWGCWC	3 cut(s)	244, 298, 318
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	7 cut(s)	78, 205, 217, 220, 268, 281, 330
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	119
BisI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
BlsI	GCNGC	7 cut(s)	93, 220, 232, 235, 271, 283, 345
Bme1390I	CCNGG	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 265
BseBI	CCWGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	2 cut(s)	103, 265
BseMII	CTCAG	2 cut(s)	255, 276
BseRI	GAGGAG	2 cut(s)	86, 368
BseXI	GCAGC	7 cut(s)	78, 205, 217, 220, 268, 281, 330
BsgI	GTGCAG	2 cut(s)	219, 329
BshFI	GGCC	1 cut(s)	107
BsiHKAI	GWGCWC	3 cut(s)	244, 298, 318
BsiHKCI	CYCGRG	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	103, 265
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	3 cut(s)	244, 298, 318
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	256, 277
BspLI	GGNNCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	264, 285, 384
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	7 cut(s)	78, 205, 217, 220, 268, 281, 330
BsuRI	GGCC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	2 cut(s)	91, 233
CfoI	GCGC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	264, 285, 384
DraIII	CACNNNGTG	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	316
Eco72I	CACGTG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	1 cut(s)	352
FaiI	YATR	5 cut(s)	44, 350, 419, 450, 463
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 129, 161
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	448
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	4 cut(s)	54, 154, 250, 426
Hpy188III	TCNNGA	4 cut(s)	85, 100, 179, 319
HpyAV	CCTTC	3 cut(s)	97, 139, 271
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	236, 346, 365
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
HpyF3I	CTNAG	3 cut(s)	264, 285, 384
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	446
LmnI	GCTCC	2 cut(s)	38, 99
LpnPI	CCDG	4 cut(s)	98, 245, 272, 284
Lsp1109I	GCAGC	7 cut(s)	78, 205, 217, 220, 268, 281, 330
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	3 cut(s)	78, 288, 304
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	3 cut(s)	244, 298, 318
MluCI	AATT	2 cut(s)	70, 420
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	107, 151, 259, 337, 346
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	317
PkrI	GCNGC	7 cut(s)	93, 220, 232, 235, 271, 283, 345
PleI	GAGTC	1 cut(s)	85
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	258
PspCI	CACGTG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	40
PstNI	CAGNNNCTG	2 cut(s)	91, 233
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	244, 298, 318
SfaNI	GCATC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	98, 317
SmoI	CTYRAG	2 cut(s)	98, 317
Sse9I	AATT	2 cut(s)	70, 420
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	117, 318
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	70, 420
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	7 cut(s)	91, 218, 230, 233, 269, 281, 343
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	135
XagI	CCTNNNNNAGG	1 cut(s)	101
XhoI	CTCGAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.