Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010306

Physical Location & Seq

Genomic Coordinates Forward (+)

16665313 .. 16665771

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAGGACAAGGGCAAAGGAAGCGAAAGATGGAACGGAGCCATAGGCAATCTGACAGAAATGGCTTTCAATTTGGAGTCACTTCAGAAGCTGCTCCTTAAAAAGGCCGTCTTTGTTGAAGAGGAGACCTTCGCTAAAGCTTCACTTTGTTCCGAGCAAGCTCGAACCATCAAGGTTCTTGAACAAAGGGTAGAAACTTTGGAAAGAGAACTTGATGCTGCCATTACAGCTGCTGCTCGTGCTCGTGCAGAAAAACGACAGGCCGAGGCAGCAGAAAAGGCAGCTGAATTGCATGCGCAGGAAGTTACAAAAGAGCTCGAGAACACCTCAAAGGTCTTTGAGCTGCACATGGAAGAGTTGCGTGCCAAGCAAGAAGAAATCGCCAAGCGCGACAAGGAAATCAAACTTTTGGAAGCTATAATTCAGACGCTTGGGGGAAAAGAATCGTCCTCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.06

Weight (kDa)

5.43

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64180 AT5G64180
fragaria_vesca	FvH4_1g26050
malus_domestica	MD00G1096800.v1.1 MD05G1163000.v1.1 MD05G1163200.v1.1 MD10G1152800.v1.1
prunus_persica	Prupe.8G061800_v2.0.a1 Prupe.8G061800_v2.0.a1
pyrus_communis	pycom05g15270 pycom10g13190
rosa_chinensis	RchiOBHm_Chr3g0485521
rosa_laevigata	RLG00000023146
rosa_multiflora	Rmu_sc0001272.1_g000017
rosa_roxburghii	Rroxscaffold_6G00396680 Rroxscaffold_6G00396960
rosa_rugosa	Rorug03G0219500 Rorug03G0219600 Rorug03G0219700
rosa_samantha	Rh3BG303900
rosa_wichuraiana	Rw3G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AccII	CGCG	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	70, 119, 182
AluBI	AGCT	8 cut(s)	91, 140, 161, 230, 284, 316, 343, 416
AluI	AGCT	8 cut(s)	91, 140, 161, 230, 284, 316, 343, 416
Alw21I	GWGCWC	2 cut(s)	244, 318
Alw26I	GTCTC	1 cut(s)	119
AlwNI	CAGNNNCTG	2 cut(s)	91, 233
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	2 cut(s)	105, 261
ApeKI	GCWGC	7 cut(s)	91, 218, 230, 233, 269, 281, 343
AspLEI	GCGC	2 cut(s)	298, 390
AvaI	CYCGRG	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	2 cut(s)	237, 243
Bbv12I	GWGCWC	2 cut(s)	244, 318
BbvI	GCAGC	7 cut(s)	78, 205, 217, 220, 281, 293, 330
BccI	CCATC	2 cut(s)	24, 176
BceAI	ACGGC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	119
BisI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
BlsI	GCNGC	7 cut(s)	93, 220, 232, 235, 271, 283, 345
BmeT110I	CYCGRG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	7 cut(s)	78, 205, 217, 220, 281, 293, 330
BsgI	GTGCAG	2 cut(s)	267, 329
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	107, 263
BsiHKAI	GWGCWC	2 cut(s)	244, 318
BsiHKCI	CYCGRG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	107, 263
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	244, 318
BspANI	GGCC	2 cut(s)	107, 263
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	264
BssSI	CACGAG	2 cut(s)	237, 243
Bst2BI	CACGAG	2 cut(s)	237, 243
Bst6I	CTCTTC	2 cut(s)	114, 348
BstC8I	GCNNGC	3 cut(s)	159, 294, 363
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	2 cut(s)	298, 390
BstMAI	GTCTC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
BstNSI	RCATGY	1 cut(s)	296
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	7 cut(s)	78, 205, 217, 220, 281, 293, 330
BsuRI	GGCC	2 cut(s)	107, 263
Cac8I	GCNNGC	3 cut(s)	159, 294, 363
CaiI	CAGNNNCTG	2 cut(s)	91, 233
CfoI	GCGC	2 cut(s)	298, 390
CseI	GACGC	1 cut(s)	436
CviAII	CATG	2 cut(s)	293, 349
Eam1104I	CTCTTC	2 cut(s)	114, 348
EarI	CTCTTC	2 cut(s)	114, 348
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	316
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	2 cut(s)	296, 352
FaiI	YATR	4 cut(s)	44, 294, 350, 419
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 129, 161
FatI	CATG	2 cut(s)	292, 348
Fnu4HI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	2 cut(s)	297, 389
GluI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
HaeIII	GGCC	2 cut(s)	107, 263
HgaI	GACGC	1 cut(s)	436
HhaI	GCGC	2 cut(s)	298, 390
Hin1II	CATG	2 cut(s)	296, 352
Hin6I	GCGC	2 cut(s)	296, 388
HinP1I	GCGC	2 cut(s)	296, 388
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	2 cut(s)	77, 443
Hpy188I	TCNGA	4 cut(s)	54, 87, 154, 426
Hpy188III	TCNNGA	2 cut(s)	179, 319
HpyAV	CCTTC	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	248, 292, 346
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
Hsp92II	CATG	2 cut(s)	296, 352
HspAI	GCGC	2 cut(s)	296, 388
LmnI	GCTCC	2 cut(s)	38, 99
LpnPI	CCDG	2 cut(s)	245, 284
Lsp1109I	GCAGC	7 cut(s)	78, 205, 217, 220, 281, 293, 330
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	78, 304
MboII	GAAGA	3 cut(s)	131, 365, 386
MhlI	GDGCHC	2 cut(s)	244, 318
MluCI	AATT	3 cut(s)	70, 287, 420
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	115, 259, 337
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	230, 284
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
NlaIII	CATG	2 cut(s)	296, 352
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	78
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	7 cut(s)	93, 220, 232, 235, 271, 283, 345
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	40
PstNI	CAGNNNCTG	2 cut(s)	91, 233
PvuII	CAGCTG	2 cut(s)	230, 284
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	244, 318
SfaNI	GCATC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	3 cut(s)	70, 287, 420
SstI	GAGCTC	1 cut(s)	318
TaqI	TCGA	2 cut(s)	163, 318
TasI	AATT	3 cut(s)	70, 287, 420
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	7 cut(s)	91, 218, 230, 233, 269, 281, 343
Tsp45I	GTSAC	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	101
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.