Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010306

Physical Location & Seq

Genomic Coordinates Forward (+)

32281993 .. 32285020

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGGACAAGGGCAAAGGAAGCGAGAGATTTGGGGGAGCCATAGCCAATCTGACCGAGATGGCTCACAATTTGGAGTCACTCCAGAAGCTGCTCCTCAAGAAAGCTGTCTTTGTCGATGAAGAGACCTTTGCCAAAGCCTCACTTTGTTCTGAACAAGCTCGTACCATTAAGGTTCTTGAACAAAGGGTTGAAACTTTGGAACGAGAACTTGATGCTGCCATTACAGCTGCTGCACGTGCTCGTTCAGAAAAACGCCAGGCTGAGGCAGCAGAAAAGGCCGCTGAGTTTCGTGCACAAGAAGTTACAAAAGAGCTTGAGAACACCTCAAAGGTATTTGAGCTGCACATGGAAGAGTTGCGTGCAAAGCAAGAAGAAATCTCTAAGCGTGATAAGGATATCAAACTTTTGGAAGCTATAATTCAGACACTTGGCGGAAAAGAAGTCCATAAAAGAACTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.31

Weight (kDa)

6.03

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64180 AT5G64180
fragaria_vesca	FvH4_1g26050
malus_domestica	MD00G1096800.v1.1 MD05G1163000.v1.1 MD05G1163200.v1.1 MD10G1152800.v1.1
prunus_persica	Prupe.8G061800_v2.0.a1 Prupe.8G061800_v2.0.a1
pyrus_communis	pycom05g15270 pycom10g13190
rosa_chinensis	RchiOBHm_Chr3g0485521
rosa_laevigata	RLG00000023146
rosa_multiflora	Rmu_sc0001272.1_g000017
rosa_roxburghii	Rroxscaffold_6G00396680 Rroxscaffold_6G00396960
rosa_rugosa	Rorug03G0219500 Rorug03G0219600 Rorug03G0219700
rosa_samantha	Rh3BG303900
rosa_wichuraiana	Rw3G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	282, 435
AcvI	CACGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	182, 194
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	7 cut(s)	91, 107, 161, 230, 316, 343, 416
AluI	AGCT	7 cut(s)	91, 107, 161, 230, 316, 343, 416
Alw21I	GWGCWC	2 cut(s)	244, 298
Alw26I	GTCTC	1 cut(s)	119
Alw44I	GTGCAC	1 cut(s)	294
AlwNI	CAGNNNCTG	2 cut(s)	91, 233
AoxI	GGCC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	6 cut(s)	91, 218, 230, 233, 269, 343
BaeGI	GKGCMC	1 cut(s)	298
BbrPI	CACGTG	1 cut(s)	239
Bbv12I	GWGCWC	2 cut(s)	244, 298
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	6 cut(s)	78, 205, 217, 220, 281, 330
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	119
BisI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
BlsI	GCNGC	7 cut(s)	93, 220, 232, 235, 271, 283, 345
Bme1390I	CCNGG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	83, 338
BsaAI	YACGTR	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	255, 276
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	6 cut(s)	78, 205, 217, 220, 281, 330
BsgI	GTGCAG	2 cut(s)	219, 329
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	244, 298
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	244, 298
BspACI	CCGC	2 cut(s)	282, 435
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	256, 277
BspLI	GGNNCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	260
Bst6I	CTCTTC	2 cut(s)	117, 348
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	264, 285, 384
BstMAI	GTCTC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	6 cut(s)	78, 205, 217, 220, 281, 330
BsuRI	GGCC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	2 cut(s)	91, 233
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	264, 285, 384
Eam1104I	CTCTTC	2 cut(s)	117, 348
EarI	CTCTTC	2 cut(s)	117, 348
EciI	GGCGGA	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	400
Eco72I	CACGTG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	400
FaeI	CATG	1 cut(s)	352
FaiI	YATR	4 cut(s)	44, 350, 419, 450
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
Fsp4HI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
GluI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	352
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	4 cut(s)	54, 154, 250, 426
Hpy188III	TCNNGA	3 cut(s)	85, 100, 179
Hpy8I	GTNNAC	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	4 cut(s)	236, 296, 346, 365
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
HpyF3I	CTNAG	3 cut(s)	264, 285, 384
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	38, 99
LpnPI	CCDG	4 cut(s)	98, 245, 272, 444
Lsp1109I	GCAGC	6 cut(s)	78, 205, 217, 220, 281, 330
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	78, 304
MboII	GAAGA	3 cut(s)	134, 365, 386
MhlI	GDGCHC	2 cut(s)	244, 298
MluCI	AATT	2 cut(s)	70, 420
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	4 cut(s)	107, 151, 259, 337
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	230, 284
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	6 cut(s)	21, 227, 239, 269, 278, 367
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	78
PkrI	GCNGC	7 cut(s)	93, 220, 232, 235, 271, 283, 345
PleI	GAGTC	1 cut(s)	85
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	258
PspCI	CACGTG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	40
PstNI	CAGNNNCTG	2 cut(s)	91, 233
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	7 cut(s)	92, 219, 231, 234, 270, 282, 344
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	244, 298
SfaNI	GCATC	1 cut(s)	205
SmlI	CTYRAG	2 cut(s)	98, 317
SmoI	CTYRAG	2 cut(s)	98, 317
Sse9I	AATT	2 cut(s)	70, 420
SsiI	CCGC	2 cut(s)	282, 435
StyD4I	CCNGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	117
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	70, 420
TauI	GCSGC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	6 cut(s)	91, 218, 230, 233, 269, 343
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	135
VneI	GTGCAC	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.