Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010306

Physical Location & Seq

Genomic Coordinates Forward (+)

18773588 .. 18774058

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGACAAGGGCAAAGGGAGCGAAAGATGGAACGGAGCCATAGGCAATTTGACAGAAATGGCTTTCAATTTGGAGTCTCTCCAGAAGCTACTTCTTAAAAAGGCTCTCTTTGTTGAAGAAGAGACCTTTGCCAAAGCCTCACTTTGTTCTGAACAAGCTCGAACCATCAAGGTTCTTGAACAAAGGGTAGAAAGTTTGGAAAGAGAACTTGATGCTGCCGTTACAGCTGCTGCTCGTGCTCGGGCAGAAAAACGACAGGCTGAGGCAGCAGAAAAGGCTGCTGAGTTGCATGCGCAAGAAGTTACAAAAGAGCTCGAGAACACCTCAAAGGTATTTGAGCTGCACCTGGAAGAGTTGCGTGCCAAACAAGAAGAGATCGCCAAGCGTGATAAGGAAATCAAACTTTTGGAAGCTATAATTCAGACACTTGGGGGAAAAGAATCGTCCTCGCATTCAAAAAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.46

Weight (kDa)

5.79

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64180 AT5G64180
fragaria_vesca	FvH4_1g26050
malus_domestica	MD00G1096800.v1.1 MD05G1163000.v1.1 MD05G1163200.v1.1 MD10G1152800.v1.1
prunus_persica	Prupe.8G061800_v2.0.a1 Prupe.8G061800_v2.0.a1
pyrus_communis	pycom05g15270 pycom10g13190
rosa_chinensis	RchiOBHm_Chr3g0485521
rosa_laevigata	RLG00000023146
rosa_multiflora	Rmu_sc0001272.1_g000017
rosa_roxburghii	Rroxscaffold_6G00396680 Rroxscaffold_6G00396960
rosa_rugosa	Rorug03G0219500 Rorug03G0219600 Rorug03G0219700
rosa_samantha	Rh3BG303900
rosa_wichuraiana	Rw3G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	70, 119, 182, 459
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	6 cut(s)	91, 161, 230, 316, 343, 416
AluI	AGCT	6 cut(s)	91, 161, 230, 316, 343, 416
Alw21I	GWGCWC	2 cut(s)	244, 318
Alw26I	GTCTC	2 cut(s)	84, 119
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	243, 317
ApeKI	GCWGC	6 cut(s)	218, 230, 233, 269, 281, 343
AspLEI	GCGC	1 cut(s)	298
AvaI	CYCGRG	2 cut(s)	243, 317
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	244, 318
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	6 cut(s)	205, 217, 220, 268, 281, 330
BccI	CCATC	2 cut(s)	24, 176
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	84, 119
BfaI	CTAG	1 cut(s)	469
BisI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
BlsI	GCNGC	6 cut(s)	220, 232, 235, 271, 283, 345
Bme1390I	CCNGG	1 cut(s)	350
BmeT110I	CYCGRG	2 cut(s)	243, 317
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	350
BseMII	CTCAG	2 cut(s)	255, 276
BseXI	GCAGC	6 cut(s)	205, 217, 220, 268, 281, 330
BsgI	GTGCAG	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	244, 318
BsiHKCI	CYCGRG	2 cut(s)	243, 317
BsmAI	GTCTC	2 cut(s)	84, 119
BsmI	GAATGC	1 cut(s)	454
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	2 cut(s)	243, 317
Bsp1286I	GDGCHC	2 cut(s)	244, 318
Bsp143I	GATC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	256, 277
BspLI	GGNNCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	119
BssMI	GATC	1 cut(s)	378
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	350
Bst6I	CTCTTC	3 cut(s)	117, 348, 369
BstC8I	GCNNGC	2 cut(s)	294, 363
BstDEI	CTNAG	2 cut(s)	264, 285
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	2 cut(s)	84, 119
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 227, 239, 269, 278
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	6 cut(s)	205, 217, 220, 268, 281, 330
Cac8I	GCNNGC	2 cut(s)	294, 363
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	298
CviAII	CATG	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	264, 285
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eam1104I	CTCTTC	3 cut(s)	117, 348, 369
EarI	CTCTTC	3 cut(s)	117, 348, 369
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	2 cut(s)	243, 317
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	1 cut(s)	296
FaiI	YATR	3 cut(s)	44, 294, 419
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 129, 161
FatI	CATG	1 cut(s)	292
Fnu4HI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
FspBI	CTAG	1 cut(s)	469
FspI	TGCGCA	1 cut(s)	297
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
GsuI	CTGGAG	1 cut(s)	68
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HinfI	GANTC	2 cut(s)	77, 443
Hpy188I	TCNGA	2 cut(s)	154, 426
Hpy188III	TCNNGA	3 cut(s)	85, 179, 319
HpyCH4V	TGCA	2 cut(s)	292, 346
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 227, 239, 269, 278
HpyF3I	CTNAG	2 cut(s)	264, 285
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	2 cut(s)	21, 38
LpnPI	CCDG	4 cut(s)	98, 245, 335, 362
Lsp1109I	GCAGC	6 cut(s)	205, 217, 220, 268, 281, 330
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	469
MaeIII	GTNAC	2 cut(s)	223, 304
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	4 cut(s)	131, 134, 365, 386
MhlI	GDGCHC	2 cut(s)	244, 318
MluCI	AATT	3 cut(s)	49, 70, 420
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	5 cut(s)	151, 259, 337, 458, 460
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	5 cut(s)	21, 227, 239, 269, 278
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	40
NsbI	TGCGCA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	317
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	6 cut(s)	220, 232, 235, 271, 283, 345
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	6 cut(s)	219, 231, 234, 270, 282, 344
Sau3AI	GATC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	244, 318
SfaNI	GCATC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	3 cut(s)	49, 70, 420
SspMI	CTAG	1 cut(s)	469
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	348
TaqI	TCGA	2 cut(s)	163, 318
TasI	AATT	3 cut(s)	49, 70, 420
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	6 cut(s)	218, 230, 233, 269, 281, 343
TspGWI	ACGGA	1 cut(s)	51
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.